data_7MIY # _model_server_result.job_id vxbZcLcWCcXLxwM8rfV1OA _model_server_result.datetime_utc '2024-11-21 14:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7miy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2002}' # _entry.id 7MIY # _exptl.entry_id 7MIY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MIY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 U N N ? 7 V N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 6 3 2 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 6 4 3 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG D 2002 NAG 4 n D NAG 2 B 2 NAG D 2003 NAG 4 n D NAG 3 B 3 NAG D 2004 NAG 5 n E NAG 1 E 1 NAG D 2005 NAG 5 n E NAG 2 E 2 NAG D 2006 NAG 6 n F NAG 1 F 1 NAG D 2007 NAG 6 n F NAG 2 F 2 NAG D 2008 NAG 6 n F NAG 3 F 3 NAG D 2009 NAG 6 n F NAG 4 F 4 NAG D 2010 NAG 5 n G NAG 1 G 1 NAG D 2011 NAG 5 n G NAG 2 G 2 NAG D 2012 NAG 5 n H NAG 1 H 1 NAG D 2014 NAG 5 n H NAG 2 H 2 NAG D 2015 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 253 A CYS 253 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 268 A CYS 268 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 1311 A CYS 1311 1_555 A SG CYS 1322 A CYS 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 1670 A CYS 1670 1_555 A SG CYS 1679 A CYS 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 303 D CYS 303 1_555 C SG CYS 1044 D CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 C SG CYS 404 D CYS 404 1_555 C SG CYS 1071 D CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 667 D CYS 667 1_555 C SG CYS 697 D CYS 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 904 D CYS 904 1_555 C SG CYS 974 D CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 996 D CYS 996 1_555 C SG CYS 1026 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 C SG CYS 999 D CYS 999 1_555 C SG CYS 1024 D CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 256 A ASN 256 1_555 I C1 NAG . A NAG 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 C ND2 ASN 92 D ASN 92 1_555 U C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale3 C ND2 ASN 184 D ASN 184 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 C ND2 ASN 348 D ASN 348 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 C ND2 ASN 468 D ASN 468 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 C ND2 ASN 613 D ASN 613 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale7 C ND2 ASN 781 D ASN 781 1_555 V C1 NAG . D NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 C ND2 ASN 895 D ASN 895 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale10 D O4 NAG . B NAG 2 1_555 D C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale13 F O4 NAG . F NAG 2 1_555 F C1 NAG . F NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale14 F O4 NAG . F NAG 3 1_555 F C1 NAG . F NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OD2 ASP 122 A ASP 122 1_555 W CA CA . D CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc2 A OE1 GLU 314 A GLU 314 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc3 A OE2 GLU 314 A GLU 314 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 A OE1 GLU 663 A GLU 663 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc5 A OE1 GLU 1365 A GLU 1365 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc6 A OE2 GLU 1365 A GLU 1365 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc7 C OG SER 261 D SER 261 1_555 W CA CA . D CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc8 C OG SER 263 D SER 263 1_555 W CA CA . D CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 C OG1 THR 331 D THR 331 1_555 W CA CA . D CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 444 n n C1 O1 NAG sing 445 n n C1 O5 NAG sing 446 n n C1 H1 NAG sing 447 n n C2 C3 NAG sing 448 n n C2 N2 NAG sing 449 n n C2 H2 NAG sing 450 n n C3 C4 NAG sing 451 n n C3 O3 NAG sing 452 n n C3 H3 NAG sing 453 n n C4 C5 NAG sing 454 n n C4 O4 NAG sing 455 n n C4 H4 NAG sing 456 n n C5 C6 NAG sing 457 n n C5 O5 NAG sing 458 n n C5 H5 NAG sing 459 n n C6 O6 NAG sing 460 n n C6 H61 NAG sing 461 n n C6 H62 NAG sing 462 n n C7 C8 NAG sing 463 n n C7 N2 NAG sing 464 n n C7 O7 NAG doub 465 n n C8 H81 NAG sing 466 n n C8 H82 NAG sing 467 n n C8 H83 NAG sing 468 n n N2 HN2 NAG sing 469 n n O1 HO1 NAG sing 470 n n O3 HO3 NAG sing 471 n n O4 HO4 NAG sing 472 n n O6 HO6 NAG sing 473 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MIY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 NAG A 1 2401 1901 NAG NAG . J 8 CA A 1 2402 1 CA CA . K 9 Y01 A 1 2403 3 Y01 Y01 . L 10 CLR A 1 2404 4 CLR CLR . M 10 CLR A 1 2405 5 CLR CLR . N 9 Y01 A 1 2406 6 Y01 Y01 . O 9 Y01 A 1 2407 7 Y01 Y01 . P 10 CLR A 1 2408 8 CLR CLR . Q 10 CLR A 1 2409 9 CLR CLR . R 11 3PE A 1 2410 10 3PE 3PE . S 11 3PE A 1 2411 11 3PE 3PE . T 12 PT5 A 1 2412 12 PT5 PT5 . U 7 NAG D 1 2001 2001 NAG NAG . V 7 NAG D 1 2002 2013 NAG NAG . W 8 CA D 1 2003 2 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 7 197.315 115.823 186.689 1 166.08 ? C1 NAG 2002 D 1 HETATM 2 C C2 NAG . . . V 7 198.406 115.498 185.644 1 166.08 ? C2 NAG 2002 D 1 HETATM 3 C C3 NAG . . . V 7 197.804 114.886 184.384 1 166.08 ? C3 NAG 2002 D 1 HETATM 4 C C4 NAG . . . V 7 196.907 113.721 184.767 1 166.08 ? C4 NAG 2002 D 1 HETATM 5 C C5 NAG . . . V 7 195.721 114.228 185.582 1 166.08 ? C5 NAG 2002 D 1 HETATM 6 C C6 NAG . . . V 7 195.364 113.325 186.74 1 166.08 ? C6 NAG 2002 D 1 HETATM 7 C C7 NAG . . . V 7 198.979 117.824 184.798 1 166.08 ? C7 NAG 2002 D 1 HETATM 8 C C8 NAG . . . V 7 197.54 118.085 184.433 1 166.08 ? C8 NAG 2002 D 1 HETATM 9 N N2 NAG . . . V 7 199.287 116.626 185.341 1 166.08 ? N2 NAG 2002 D 1 HETATM 10 O O3 NAG . . . V 7 198.849 114.438 183.529 1 166.08 ? O3 NAG 2002 D 1 HETATM 11 O O4 NAG . . . V 7 196.427 113.071 183.596 1 166.08 ? O4 NAG 2002 D 1 HETATM 12 O O5 NAG . . . V 7 195.974 115.538 186.125 1 166.08 ? O5 NAG 2002 D 1 HETATM 13 O O6 NAG . . . V 7 196.508 112.652 187.246 1 166.08 ? O6 NAG 2002 D 1 HETATM 14 O O7 NAG . . . V 7 199.845 118.673 184.607 1 166.08 ? O7 NAG 2002 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #