data_7MIY # _model_server_result.job_id YpyQwqB9KIlXJODf5KiSBA _model_server_result.datetime_utc '2024-11-21 14:16:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7miy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":2405}' # _entry.id 7MIY # _exptl.entry_id 7MIY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MIY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 L N N ? 10 M N N ? 10 P N N ? 10 Q N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 6 3 2 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 6 4 3 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG D 2002 NAG 4 n D NAG 2 B 2 NAG D 2003 NAG 4 n D NAG 3 B 3 NAG D 2004 NAG 5 n E NAG 1 E 1 NAG D 2005 NAG 5 n E NAG 2 E 2 NAG D 2006 NAG 6 n F NAG 1 F 1 NAG D 2007 NAG 6 n F NAG 2 F 2 NAG D 2008 NAG 6 n F NAG 3 F 3 NAG D 2009 NAG 6 n F NAG 4 F 4 NAG D 2010 NAG 5 n G NAG 1 G 1 NAG D 2011 NAG 5 n G NAG 2 G 2 NAG D 2012 NAG 5 n H NAG 1 H 1 NAG D 2014 NAG 5 n H NAG 2 H 2 NAG D 2015 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 253 A CYS 253 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 268 A CYS 268 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 1311 A CYS 1311 1_555 A SG CYS 1322 A CYS 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 1670 A CYS 1670 1_555 A SG CYS 1679 A CYS 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 303 D CYS 303 1_555 C SG CYS 1044 D CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 C SG CYS 404 D CYS 404 1_555 C SG CYS 1071 D CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 667 D CYS 667 1_555 C SG CYS 697 D CYS 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 904 D CYS 904 1_555 C SG CYS 974 D CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 996 D CYS 996 1_555 C SG CYS 1026 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 C SG CYS 999 D CYS 999 1_555 C SG CYS 1024 D CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 256 A ASN 256 1_555 I C1 NAG . A NAG 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 C ND2 ASN 92 D ASN 92 1_555 U C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale3 C ND2 ASN 184 D ASN 184 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 C ND2 ASN 348 D ASN 348 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 C ND2 ASN 468 D ASN 468 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 C ND2 ASN 613 D ASN 613 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale7 C ND2 ASN 781 D ASN 781 1_555 V C1 NAG . D NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 C ND2 ASN 895 D ASN 895 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale10 D O4 NAG . B NAG 2 1_555 D C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale13 F O4 NAG . F NAG 2 1_555 F C1 NAG . F NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale14 F O4 NAG . F NAG 3 1_555 F C1 NAG . F NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OD2 ASP 122 A ASP 122 1_555 W CA CA . D CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc2 A OE1 GLU 314 A GLU 314 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc3 A OE2 GLU 314 A GLU 314 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 A OE1 GLU 663 A GLU 663 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc5 A OE1 GLU 1365 A GLU 1365 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc6 A OE2 GLU 1365 A GLU 1365 1_555 J CA CA . A CA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc7 C OG SER 261 D SER 261 1_555 W CA CA . D CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc8 C OG SER 263 D SER 263 1_555 W CA CA . D CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 C OG1 THR 331 D THR 331 1_555 W CA CA . D CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 202 n n C1 C10 CLR sing 203 n n C1 H11 CLR sing 204 n n C1 H12 CLR sing 205 n n C2 C3 CLR sing 206 n n C2 H21 CLR sing 207 n n C2 H22 CLR sing 208 n n C3 C4 CLR sing 209 n n C3 O1 CLR sing 210 n n C3 H3 CLR sing 211 n n C4 C5 CLR sing 212 n n C4 H41 CLR sing 213 n n C4 H42 CLR sing 214 n n C5 C6 CLR doub 215 n n C5 C10 CLR sing 216 n n C6 C7 CLR sing 217 n n C6 H6 CLR sing 218 n n C7 C8 CLR sing 219 n n C7 H71 CLR sing 220 n n C7 H72 CLR sing 221 n n C8 C9 CLR sing 222 n n C8 C14 CLR sing 223 n n C8 H8 CLR sing 224 n n C9 C10 CLR sing 225 n n C9 C11 CLR sing 226 n n C9 H9 CLR sing 227 n n C10 C19 CLR sing 228 n n C11 C12 CLR sing 229 n n C11 H111 CLR sing 230 n n C11 H112 CLR sing 231 n n C12 C13 CLR sing 232 n n C12 H121 CLR sing 233 n n C12 H122 CLR sing 234 n n C13 C14 CLR sing 235 n n C13 C17 CLR sing 236 n n C13 C18 CLR sing 237 n n C14 C15 CLR sing 238 n n C14 H14 CLR sing 239 n n C15 C16 CLR sing 240 n n C15 H151 CLR sing 241 n n C15 H152 CLR sing 242 n n C16 C17 CLR sing 243 n n C16 H161 CLR sing 244 n n C16 H162 CLR sing 245 n n C17 C20 CLR sing 246 n n C17 H17 CLR sing 247 n n C18 H181 CLR sing 248 n n C18 H182 CLR sing 249 n n C18 H183 CLR sing 250 n n C19 H191 CLR sing 251 n n C19 H192 CLR sing 252 n n C19 H193 CLR sing 253 n n C20 C21 CLR sing 254 n n C20 C22 CLR sing 255 n n C20 H20 CLR sing 256 n n C21 H211 CLR sing 257 n n C21 H212 CLR sing 258 n n C21 H213 CLR sing 259 n n C22 C23 CLR sing 260 n n C22 H221 CLR sing 261 n n C22 H222 CLR sing 262 n n C23 C24 CLR sing 263 n n C23 H231 CLR sing 264 n n C23 H232 CLR sing 265 n n C24 C25 CLR sing 266 n n C24 H241 CLR sing 267 n n C24 H242 CLR sing 268 n n C25 C26 CLR sing 269 n n C25 C27 CLR sing 270 n n C25 H25 CLR sing 271 n n C26 H261 CLR sing 272 n n C26 H262 CLR sing 273 n n C26 H263 CLR sing 274 n n C27 H271 CLR sing 275 n n C27 H272 CLR sing 276 n n C27 H273 CLR sing 277 n n O1 H1 CLR sing 278 n n # _atom_sites.entry_id 7MIY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 NAG A 1 2401 1901 NAG NAG . J 8 CA A 1 2402 1 CA CA . K 9 Y01 A 1 2403 3 Y01 Y01 . L 10 CLR A 1 2404 4 CLR CLR . M 10 CLR A 1 2405 5 CLR CLR . N 9 Y01 A 1 2406 6 Y01 Y01 . O 9 Y01 A 1 2407 7 Y01 Y01 . P 10 CLR A 1 2408 8 CLR CLR . Q 10 CLR A 1 2409 9 CLR CLR . R 11 3PE A 1 2410 10 3PE 3PE . S 11 3PE A 1 2411 11 3PE 3PE . T 12 PT5 A 1 2412 12 PT5 PT5 . U 7 NAG D 1 2001 2001 NAG NAG . V 7 NAG D 1 2002 2013 NAG NAG . W 8 CA D 1 2003 2 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . M 10 163.504 125.839 147.645 1 40.1 ? C1 CLR 2405 A 1 HETATM 2 C C2 CLR . . . M 10 164 125.264 148.949 1 40.1 ? C2 CLR 2405 A 1 HETATM 3 C C3 CLR . . . M 10 163.302 125.865 150.134 1 40.1 ? C3 CLR 2405 A 1 HETATM 4 C C4 CLR . . . M 10 161.784 125.657 149.984 1 40.1 ? C4 CLR 2405 A 1 HETATM 5 C C5 CLR . . . M 10 161.227 126.103 148.648 1 40.1 ? C5 CLR 2405 A 1 HETATM 6 C C6 CLR . . . M 10 160.126 126.832 148.649 1 40.1 ? C6 CLR 2405 A 1 HETATM 7 C C7 CLR . . . M 10 159.457 127.348 147.364 1 40.1 ? C7 CLR 2405 A 1 HETATM 8 C C8 CLR . . . M 10 159.989 126.609 146.132 1 40.1 ? C8 CLR 2405 A 1 HETATM 9 C C9 CLR . . . M 10 161.54 126.527 146.212 1 40.1 ? C9 CLR 2405 A 1 HETATM 10 C C10 CLR . . . M 10 162.009 125.656 147.4 1 40.1 ? C10 CLR 2405 A 1 HETATM 11 C C11 CLR . . . M 10 162.178 126.123 144.877 1 40.1 ? C11 CLR 2405 A 1 HETATM 12 C C12 CLR . . . M 10 161.66 126.938 143.68 1 40.1 ? C12 CLR 2405 A 1 HETATM 13 C C13 CLR . . . M 10 160.135 126.778 143.574 1 40.1 ? C13 CLR 2405 A 1 HETATM 14 C C14 CLR . . . M 10 159.592 127.392 144.921 1 40.1 ? C14 CLR 2405 A 1 HETATM 15 C C15 CLR . . . M 10 158.061 127.573 144.674 1 40.1 ? C15 CLR 2405 A 1 HETATM 16 C C16 CLR . . . M 10 157.969 127.842 143.123 1 40.1 ? C16 CLR 2405 A 1 HETATM 17 C C17 CLR . . . M 10 159.442 127.763 142.559 1 40.1 ? C17 CLR 2405 A 1 HETATM 18 C C18 CLR . . . M 10 159.682 125.364 143.354 1 40.1 ? C18 CLR 2405 A 1 HETATM 19 C C19 CLR . . . M 10 161.689 124.178 147.111 1 40.1 ? C19 CLR 2405 A 1 HETATM 20 C C20 CLR . . . M 10 159.412 127.303 141.101 1 40.1 ? C20 CLR 2405 A 1 HETATM 21 C C21 CLR . . . M 10 160.669 127.636 140.292 1 40.1 ? C21 CLR 2405 A 1 HETATM 22 C C22 CLR . . . M 10 158.236 128.123 140.454 1 40.1 ? C22 CLR 2405 A 1 HETATM 23 C C23 CLR . . . M 10 157.827 127.565 139.085 1 40.1 ? C23 CLR 2405 A 1 HETATM 24 C C24 CLR . . . M 10 156.513 126.776 139.385 1 40.1 ? C24 CLR 2405 A 1 HETATM 25 C C25 CLR . . . M 10 155.39 127.786 139.685 1 40.1 ? C25 CLR 2405 A 1 HETATM 26 C C26 CLR . . . M 10 155.147 128.587 138.397 1 40.1 ? C26 CLR 2405 A 1 HETATM 27 C C27 CLR . . . M 10 154.132 127.138 140.265 1 40.1 ? C27 CLR 2405 A 1 HETATM 28 O O1 CLR . . . M 10 163.744 125.361 151.377 1 40.1 ? O1 CLR 2405 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #