data_7MJ0 # _model_server_result.job_id WbBE6bK7xKGd4j6NmPpD6g _model_server_result.datetime_utc '2025-02-26 06:57:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7MJ0 # _exptl.entry_id 7MJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJ0 _cell.length_a 121.284 _cell.length_b 121.284 _cell.length_c 213.406 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA octameric 8 author_and_software_defined_assembly 2 PISA octameric 8 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I 1 1,2,4,6 C,D,J 2 1,3,5,7 E,F 3 1,2,4,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 121.284 0 0 3 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -121.284 0 4 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 60.642 -60.642 0 5 'crystal symmetry operation' 3_445 -y-1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 -60.642 -60.642 0 6 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 60.642 60.642 0 7 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 60.642 -60.642 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 151 A ASP 151 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc2 A O GLY 188 A GLY 188 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc3 A O VAL 191 A VAL 191 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc4 A O SER 223 A SER 223 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc5 G O2P AMP . A AMP 301 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 7MJ0 _atom_sites.fract_transf_matrix[1][1] 0.008245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 AMP A 1 301 301 AMP AMP . H 3 MG A 1 302 1 MG MG . I 3 MG A 1 303 2 MG MG . J 2 AMP C 1 301 302 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . G 2 38.065 8.108 7.496 0.79 88.57 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . G 2 38.466 9.023 6.368 0.79 48.12 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . G 2 36.607 7.737 7.492 0.79 76.77 -1 O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . G 2 38.961 6.911 7.653 0.79 60.04 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . G 2 38.26 9.004 8.8 0.79 79.64 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . G 2 38.558 10.4 8.618 0.79 66.16 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . G 2 38.895 11.026 9.947 0.79 76.25 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . G 2 40.302 11.38 9.946 0.79 73.55 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . G 2 38.16 12.336 10.256 0.79 88.38 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . G 2 37.985 12.534 11.651 0.79 82.93 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . G 2 39.118 13.38 9.684 0.79 79.35 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . G 2 38.92 14.644 10.272 0.79 67.99 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . G 2 40.45 12.773 10.099 0.79 78.25 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . G 2 41.583 13.212 9.298 0.79 83.29 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . G 2 41.551 13.683 8.013 0.79 76.05 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . G 2 42.729 13.999 7.548 0.79 77.31 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . G 2 43.591 13.725 8.595 0.79 83.58 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . G 2 44.981 13.851 8.73 0.79 86.46 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . G 2 45.772 14.304 7.767 0.79 85.31 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . G 2 45.533 13.492 9.908 0.79 79.45 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . G 2 44.733 13.039 10.873 0.79 78.95 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . G 2 43.418 12.877 10.859 0.79 81.59 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . G 2 42.899 13.241 9.679 0.79 86.05 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 23 #