data_7MJ1 # _model_server_result.job_id zctNUfcIwDHFe4a6unwYwA _model_server_result.datetime_utc '2024-10-19 05:28:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":302}' # _entry.id 7MJ1 # _exptl.entry_id 7MJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJ1 _cell.length_a 120.445 _cell.length_b 120.445 _cell.length_c 213.589 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA octameric 8 author_and_software_defined_assembly 2 PISA octameric 8 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G 1 1,2,4,6 B,C,H,I,J 2 1,3,5,7 D,E,K,L 3 1,2,4,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 120.445 0 0 3 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -120.445 0 4 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 60.2225 -60.2225 0 5 'crystal symmetry operation' 3_445 -y-1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 -60.2225 -60.2225 0 6 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 60.2225 60.2225 0 7 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 60.2225 -60.2225 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 L C4N NAI . E NAI 302 1_555 E SG CYS 221 F CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc1 A O GLY 188 A GLY 188 1_555 G MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc2 A O SER 223 A SER 223 1_555 G MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc3 B OD1 ASP 151 C ASP 151 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc4 B OD2 ASP 151 C ASP 151 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc5 B O GLY 188 C GLY 188 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc6 B O VAL 191 C VAL 191 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 B O SER 223 C SER 223 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 I O1A NAD . C NAD 302 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc9 I O2N NAD . C NAD 302 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 D OD1 ASP 151 E ASP 151 1_555 K MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc11 D OD2 ASP 151 E ASP 151 1_555 K MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 K MG MG . E MG 301 1_555 L O2A NAI . E NAI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc13 K MG MG . E MG 301 1_555 L O2N NAI . E NAI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 310 n n PA O2A NAI sing 311 n n PA O5B NAI sing 312 n n PA O3 NAI sing 313 n n O2A HOA2 NAI sing 314 n n O5B C5B NAI sing 315 n n C5B C4B NAI sing 316 n n C5B H51A NAI sing 317 n n C5B H52A NAI sing 318 n n C4B O4B NAI sing 319 n n C4B C3B NAI sing 320 n n C4B H4B NAI sing 321 n n O4B C1B NAI sing 322 n n C3B O3B NAI sing 323 n n C3B C2B NAI sing 324 n n C3B H3B NAI sing 325 n n O3B HO3A NAI sing 326 n n C2B O2B NAI sing 327 n n C2B C1B NAI sing 328 n n C2B H2B NAI sing 329 n n O2B HO2A NAI sing 330 n n C1B N9A NAI sing 331 n n C1B H1B NAI sing 332 n n N9A C8A NAI sing 333 n y N9A C4A NAI sing 334 n y C8A N7A NAI doub 335 n y C8A H8A NAI sing 336 n n N7A C5A NAI sing 337 n y C5A C6A NAI sing 338 n y C5A C4A NAI doub 339 n y C6A N6A NAI sing 340 n n C6A N1A NAI doub 341 n y N6A H61A NAI sing 342 n n N6A H62A NAI sing 343 n n N1A C2A NAI sing 344 n y C2A N3A NAI doub 345 n y C2A H2A NAI sing 346 n n N3A C4A NAI sing 347 n y O3 PN NAI sing 348 n n PN O1N NAI sing 349 n n PN O2N NAI doub 350 n n PN O5D NAI sing 351 n n O1N HO1N NAI sing 352 n n O5D C5D NAI sing 353 n n C5D C4D NAI sing 354 n n C5D H51N NAI sing 355 n n C5D H52N NAI sing 356 n n C4D O4D NAI sing 357 n n C4D C3D NAI sing 358 n n C4D H4D NAI sing 359 n n O4D C1D NAI sing 360 n n C3D O3D NAI sing 361 n n C3D C2D NAI sing 362 n n C3D H3D NAI sing 363 n n O3D HO3N NAI sing 364 n n C2D O2D NAI sing 365 n n C2D C1D NAI sing 366 n n C2D H2D NAI sing 367 n n O2D HO2N NAI sing 368 n n C1D N1N NAI sing 369 n n C1D H1D NAI sing 370 n n N1N C2N NAI sing 371 n n N1N C6N NAI sing 372 n n C2N C3N NAI doub 373 n n C2N H2N NAI sing 374 n n C3N C7N NAI sing 375 n n C3N C4N NAI sing 376 n n C7N O7N NAI doub 377 n n C7N N7N NAI sing 378 n n N7N H71N NAI sing 379 n n N7N H72N NAI sing 380 n n C4N C5N NAI sing 381 n n C4N H4N NAI sing 382 n n C4N H42N NAI sing 383 n n C5N C6N NAI doub 384 n n C5N H5N NAI sing 385 n n C6N H6N NAI sing 386 n n # _atom_sites.entry_id 7MJ1 _atom_sites.fract_transf_matrix[1][1] 0.008303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MG A 1 301 2 MG MG . H 2 MG C 1 301 3 MG MG . I 3 NAD C 1 302 5 NAD NAD . J 2 MG C 1 303 6 MG MG . K 2 MG E 1 301 1 MG MG . L 4 NAI E 1 302 4 NAI NAI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . L 4 35.999 -5.637 79.535 1 104.91 ? PA NAI 302 E 1 HETATM 2 O O1A NAI . . . L 4 35.465 -4.593 78.622 1 102.71 -1 O1A NAI 302 E 1 HETATM 3 O O2A NAI . . . L 4 35.169 -6.817 79.9 1 104.72 ? O2A NAI 302 E 1 HETATM 4 O O5B NAI . . . L 4 36.521 -4.945 80.856 1 107.56 ? O5B NAI 302 E 1 HETATM 5 C C5B NAI . . . L 4 36.531 -3.511 80.823 1 107.06 ? C5B NAI 302 E 1 HETATM 6 C C4B NAI . . . L 4 36.151 -2.985 82.18 1 110.19 ? C4B NAI 302 E 1 HETATM 7 O O4B NAI . . . L 4 36.962 -1.82 82.457 1 110.61 ? O4B NAI 302 E 1 HETATM 8 C C3B NAI . . . L 4 34.727 -2.451 82.304 1 110.56 ? C3B NAI 302 E 1 HETATM 9 O O3B NAI . . . L 4 34.465 -2.26 83.685 1 114.82 ? O3B NAI 302 E 1 HETATM 10 C C2B NAI . . . L 4 34.909 -1.099 81.624 1 108.74 ? C2B NAI 302 E 1 HETATM 11 O O2B NAI . . . L 4 33.854 -0.19 81.831 1 110.69 ? O2B NAI 302 E 1 HETATM 12 C C1B NAI . . . L 4 36.174 -0.662 82.341 1 110.45 ? C1B NAI 302 E 1 HETATM 13 N N9A NAI . . . L 4 36.946 0.31 81.598 1 108.73 ? N9A NAI 302 E 1 HETATM 14 C C8A NAI . . . L 4 36.634 0.851 80.383 1 106.82 ? C8A NAI 302 E 1 HETATM 15 N N7A NAI . . . L 4 37.529 1.701 79.954 1 106.39 ? N7A NAI 302 E 1 HETATM 16 C C5A NAI . . . L 4 38.482 1.724 80.956 1 107.7 ? C5A NAI 302 E 1 HETATM 17 C C6A NAI . . . L 4 39.68 2.436 81.097 1 107.8 ? C6A NAI 302 E 1 HETATM 18 N N6A NAI . . . L 4 40.136 3.288 80.189 1 106.6 ? N6A NAI 302 E 1 HETATM 19 N N1A NAI . . . L 4 40.398 2.232 82.221 1 110.41 ? N1A NAI 302 E 1 HETATM 20 C C2A NAI . . . L 4 39.931 1.369 83.128 1 113.22 ? C2A NAI 302 E 1 HETATM 21 N N3A NAI . . . L 4 38.821 0.641 83.1 1 112.98 ? N3A NAI 302 E 1 HETATM 22 C C4A NAI . . . L 4 38.135 0.868 81.975 1 110.1 ? C4A NAI 302 E 1 HETATM 23 O O3 NAI . . . L 4 37.377 -6.143 78.948 1 99.85 ? O3 NAI 302 E 1 HETATM 24 P PN NAI . . . L 4 38.161 -7.425 79.442 1 101.49 ? PN NAI 302 E 1 HETATM 25 O O1N NAI . . . L 4 38.737 -8.166 78.286 1 102.34 -1 O1N NAI 302 E 1 HETATM 26 O O2N NAI . . . L 4 37.278 -8.165 80.38 1 102.64 ? O2N NAI 302 E 1 HETATM 27 O O5D NAI . . . L 4 39.325 -6.697 80.241 1 103.16 ? O5D NAI 302 E 1 HETATM 28 C C5D NAI . . . L 4 38.99 -5.903 81.393 1 104.91 ? C5D NAI 302 E 1 HETATM 29 C C4D NAI . . . L 4 40.114 -6.03 82.386 1 104.29 ? C4D NAI 302 E 1 HETATM 30 O O4D NAI . . . L 4 39.607 -5.85 83.724 1 107.37 ? O4D NAI 302 E 1 HETATM 31 C C3D NAI . . . L 4 40.84 -7.376 82.358 1 103.9 ? C3D NAI 302 E 1 HETATM 32 O O3D NAI . . . L 4 42.237 -7.174 82.231 1 105.2 ? O3D NAI 302 E 1 HETATM 33 C C2D NAI . . . L 4 40.448 -8.014 83.69 1 106.48 ? C2D NAI 302 E 1 HETATM 34 O O2D NAI . . . L 4 41.524 -8.796 84.177 1 108.61 ? O2D NAI 302 E 1 HETATM 35 C C1D NAI . . . L 4 40.095 -6.847 84.605 1 109.86 ? C1D NAI 302 E 1 HETATM 36 N N1N NAI . . . L 4 38.977 -7.194 85.53 1 112.14 ? N1N NAI 302 E 1 HETATM 37 C C2N NAI . . . L 4 39.089 -7.804 86.792 1 114.24 ? C2N NAI 302 E 1 HETATM 38 C C3N NAI . . . L 4 38.135 -7.604 87.735 1 115.11 ? C3N NAI 302 E 1 HETATM 39 C C7N NAI . . . L 4 38.385 -8.168 89.103 1 119.36 ? C7N NAI 302 E 1 HETATM 40 O O7N NAI . . . L 4 38.294 -9.375 89.29 1 122.8 ? O7N NAI 302 E 1 HETATM 41 N N7N NAI . . . L 4 38.72 -7.316 90.057 1 119.34 ? N7N NAI 302 E 1 HETATM 42 C C4N NAI . . . L 4 36.931 -6.664 87.456 1 115.11 ? C4N NAI 302 E 1 HETATM 43 C C5N NAI . . . L 4 36.639 -6.87 86.002 1 113.9 ? C5N NAI 302 E 1 HETATM 44 C C6N NAI . . . L 4 37.584 -7.146 85.116 1 111.67 ? C6N NAI 302 E 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #