data_7MJC # _model_server_result.job_id KY9Lz79Jddlz31FGWkTFrQ _model_server_result.datetime_utc '2025-01-02 18:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7MJC # _exptl.entry_id 7MJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MJC _cell.length_a 101.35 _cell.length_b 101.35 _cell.length_c 186.692 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 37 A THR 39 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc2 A O VAL 38 A VAL 40 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc3 A O ASP 107 A ASP 109 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc4 A OD1 ASP 107 A ASP 109 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc5 A O GLN 194 A GLN 196 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 D NA NA . A NA 602 1_555 G O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc7 B OG1 THR 37 B THR 39 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc8 B O VAL 38 B VAL 40 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc9 B O ASP 107 B ASP 109 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc10 B OD1 ASP 107 B ASP 109 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 7MJC _atom_sites.fract_transf_matrix[1][1] 0.009867 _atom_sites.fract_transf_matrix[1][2] 0.005697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 4 NAD ZRF . D 3 NA A 1 602 1 NA NA . E 2 NAD B 1 601 3 NAD ZRF . F 3 NA B 1 602 2 NA NA . G 4 HOH A 1 701 3 HOH HOH . G 4 HOH A 2 702 38 HOH HOH . G 4 HOH A 3 703 19 HOH HOH . G 4 HOH A 4 704 16 HOH HOH . G 4 HOH A 5 705 34 HOH HOH . G 4 HOH A 6 706 49 HOH HOH . G 4 HOH A 7 707 59 HOH HOH . G 4 HOH A 8 708 47 HOH HOH . G 4 HOH A 9 709 13 HOH HOH . G 4 HOH A 10 710 27 HOH HOH . G 4 HOH A 11 711 39 HOH HOH . G 4 HOH A 12 712 18 HOH HOH . G 4 HOH A 13 713 31 HOH HOH . G 4 HOH A 14 714 7 HOH HOH . G 4 HOH A 15 715 45 HOH HOH . G 4 HOH A 16 716 20 HOH HOH . G 4 HOH A 17 717 1 HOH HOH . G 4 HOH A 18 718 28 HOH HOH . G 4 HOH A 19 719 5 HOH HOH . G 4 HOH A 20 720 48 HOH HOH . G 4 HOH A 21 721 2 HOH HOH . G 4 HOH A 22 722 12 HOH HOH . G 4 HOH A 23 723 6 HOH HOH . G 4 HOH A 24 724 40 HOH HOH . G 4 HOH A 25 725 11 HOH HOH . G 4 HOH A 26 726 36 HOH HOH . G 4 HOH A 27 727 30 HOH HOH . G 4 HOH A 28 728 4 HOH HOH . G 4 HOH A 29 729 8 HOH HOH . H 4 HOH B 1 701 62 HOH HOH . H 4 HOH B 2 702 23 HOH HOH . H 4 HOH B 3 703 9 HOH HOH . H 4 HOH B 4 704 68 HOH HOH . H 4 HOH B 5 705 67 HOH HOH . H 4 HOH B 6 706 33 HOH HOH . H 4 HOH B 7 707 60 HOH HOH . H 4 HOH B 8 708 58 HOH HOH . H 4 HOH B 9 709 24 HOH HOH . H 4 HOH B 10 710 22 HOH HOH . H 4 HOH B 11 711 51 HOH HOH . H 4 HOH B 12 712 44 HOH HOH . H 4 HOH B 13 713 72 HOH HOH . H 4 HOH B 14 714 10 HOH HOH . H 4 HOH B 15 715 53 HOH HOH . H 4 HOH B 16 716 46 HOH HOH . H 4 HOH B 17 717 70 HOH HOH . H 4 HOH B 18 718 73 HOH HOH . H 4 HOH B 19 719 69 HOH HOH . H 4 HOH B 20 720 32 HOH HOH . H 4 HOH B 21 721 66 HOH HOH . H 4 HOH B 22 722 21 HOH HOH . H 4 HOH B 23 723 54 HOH HOH . H 4 HOH B 24 724 26 HOH HOH . H 4 HOH B 25 725 52 HOH HOH . H 4 HOH B 26 726 37 HOH HOH . H 4 HOH B 27 727 50 HOH HOH . H 4 HOH B 28 728 61 HOH HOH . H 4 HOH B 29 729 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 12.713 -27.531 13.803 1 56.33 ? PA NAD 601 B 1 HETATM 2 O O1A NAD . . . E 2 14.172 -27.255 13.522 1 56.74 ? O1A NAD 601 B 1 HETATM 3 O O2A NAD . . . E 2 12.244 -28.796 13.127 1 58.59 ? O2A NAD 601 B 1 HETATM 4 O O5B NAD . . . E 2 11.74 -26.375 13.285 1 54.29 ? O5B NAD 601 B 1 HETATM 5 C C5B NAD . . . E 2 11.691 -25.142 13.982 1 55.86 ? C5B NAD 601 B 1 HETATM 6 C C4B NAD . . . E 2 11.18 -24.055 13.052 1 55.08 ? C4B NAD 601 B 1 HETATM 7 O O4B NAD . . . E 2 12.059 -23.955 11.938 1 53.93 ? O4B NAD 601 B 1 HETATM 8 C C3B NAD . . . E 2 9.8 -24.349 12.492 1 56.14 ? C3B NAD 601 B 1 HETATM 9 O O3B NAD . . . E 2 9.105 -23.097 12.334 1 56.73 ? O3B NAD 601 B 1 HETATM 10 C C2B NAD . . . E 2 10.092 -25.016 11.164 1 55.72 ? C2B NAD 601 B 1 HETATM 11 O O2B NAD . . . E 2 9.043 -24.829 10.219 1 54.61 ? O2B NAD 601 B 1 HETATM 12 C C1B NAD . . . E 2 11.383 -24.314 10.731 1 56.41 ? C1B NAD 601 B 1 HETATM 13 N N9A NAD . . . E 2 12.273 -25.083 9.804 1 56.74 ? N9A NAD 601 B 1 HETATM 14 C C8A NAD . . . E 2 12.43 -26.424 9.699 1 57.08 ? C8A NAD 601 B 1 HETATM 15 N N7A NAD . . . E 2 13.32 -26.731 8.722 1 58.05 ? N7A NAD 601 B 1 HETATM 16 C C5A NAD . . . E 2 13.762 -25.583 8.172 1 57.63 ? C5A NAD 601 B 1 HETATM 17 C C6A NAD . . . E 2 14.657 -25.237 7.167 1 56.14 ? C6A NAD 601 B 1 HETATM 18 N N6A NAD . . . E 2 15.321 -26.189 6.483 1 54.61 ? N6A NAD 601 B 1 HETATM 19 N N1A NAD . . . E 2 14.861 -23.924 6.884 1 59.45 ? N1A NAD 601 B 1 HETATM 20 C C2A NAD . . . E 2 14.225 -22.942 7.556 1 58.56 ? C2A NAD 601 B 1 HETATM 21 N N3A NAD . . . E 2 13.344 -23.207 8.548 1 58.23 ? N3A NAD 601 B 1 HETATM 22 C C4A NAD . . . E 2 13.067 -24.498 8.895 1 57.82 ? C4A NAD 601 B 1 HETATM 23 O O3 NAD . . . E 2 12.607 -27.822 15.348 1 58.97 ? O3 NAD 601 B 1 HETATM 24 P PN NAD . . . E 2 11.387 -28.439 16.167 1 62.35 ? PN NAD 601 B 1 HETATM 25 O O1N NAD . . . E 2 10.032 -28.135 15.383 1 59.06 ? O1N NAD 601 B 1 HETATM 26 O O2N NAD . . . E 2 11.613 -29.912 16.185 1 62.82 ? O2N NAD 601 B 1 HETATM 27 O O5D NAD . . . E 2 11.41 -27.767 17.624 1 57.58 ? O5D NAD 601 B 1 HETATM 28 C C5D NAD . . . E 2 12.092 -28.417 18.7 1 56.45 ? C5D NAD 601 B 1 HETATM 29 C C4D NAD . . . E 2 13.575 -28.083 18.739 1 55.34 ? C4D NAD 601 B 1 HETATM 30 O O4D NAD . . . E 2 13.777 -26.702 19.08 1 58.26 ? O4D NAD 601 B 1 HETATM 31 C C3D NAD . . . E 2 14.276 -28.882 19.818 1 55.3 ? C3D NAD 601 B 1 HETATM 32 O O3D NAD . . . E 2 15.492 -29.403 19.283 1 54.03 ? O3D NAD 601 B 1 HETATM 33 C C2D NAD . . . E 2 14.449 -27.875 20.955 1 55.49 ? C2D NAD 601 B 1 HETATM 34 O O2D NAD . . . E 2 15.528 -28.199 21.838 1 53.32 ? O2D NAD 601 B 1 HETATM 35 C C1D NAD . . . E 2 14.603 -26.538 20.243 1 57.28 ? C1D NAD 601 B 1 HETATM 36 N N1N NAD . . . E 2 14.204 -25.358 21.061 1 60.1 ? N1N NAD 601 B 1 HETATM 37 C C2N NAD . . . E 2 15.118 -24.418 21.427 1 61.13 ? C2N NAD 601 B 1 HETATM 38 C C3N NAD . . . E 2 14.758 -23.302 22.208 1 61.26 ? C3N NAD 601 B 1 HETATM 39 C C7N NAD . . . E 2 15.738 -22.259 22.654 1 60.52 ? C7N NAD 601 B 1 HETATM 40 O O7N NAD . . . E 2 15.38 -21.105 22.886 1 55.69 ? O7N NAD 601 B 1 HETATM 41 N N7N NAD . . . E 2 16.999 -22.644 22.808 1 64.2 ? N7N NAD 601 B 1 HETATM 42 C C4N NAD . . . E 2 13.444 -23.149 22.601 1 62.82 ? C4N NAD 601 B 1 HETATM 43 C C5N NAD . . . E 2 12.53 -24.104 22.215 1 64.63 ? C5N NAD 601 B 1 HETATM 44 C C6N NAD . . . E 2 12.922 -25.205 21.445 1 61.26 ? C6N NAD 601 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 796 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #