data_7MJC # _model_server_result.job_id jmM-txpiSb5XhjNwsabtkQ _model_server_result.datetime_utc '2025-01-02 19:27:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7MJC # _exptl.entry_id 7MJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MJC _cell.length_a 101.35 _cell.length_b 101.35 _cell.length_c 186.692 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 37 A THR 39 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc2 A O VAL 38 A VAL 40 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc3 A O ASP 107 A ASP 109 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc4 A OD1 ASP 107 A ASP 109 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc5 A O GLN 194 A GLN 196 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 D NA NA . A NA 602 1_555 G O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc7 B OG1 THR 37 B THR 39 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc8 B O VAL 38 B VAL 40 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc9 B O ASP 107 B ASP 109 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc10 B OD1 ASP 107 B ASP 109 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MJC _atom_sites.fract_transf_matrix[1][1] 0.009867 _atom_sites.fract_transf_matrix[1][2] 0.005697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 4 NAD ZRF . D 3 NA A 1 602 1 NA NA . E 2 NAD B 1 601 3 NAD ZRF . F 3 NA B 1 602 2 NA NA . G 4 HOH A 1 701 3 HOH HOH . G 4 HOH A 2 702 38 HOH HOH . G 4 HOH A 3 703 19 HOH HOH . G 4 HOH A 4 704 16 HOH HOH . G 4 HOH A 5 705 34 HOH HOH . G 4 HOH A 6 706 49 HOH HOH . G 4 HOH A 7 707 59 HOH HOH . G 4 HOH A 8 708 47 HOH HOH . G 4 HOH A 9 709 13 HOH HOH . G 4 HOH A 10 710 27 HOH HOH . G 4 HOH A 11 711 39 HOH HOH . G 4 HOH A 12 712 18 HOH HOH . G 4 HOH A 13 713 31 HOH HOH . G 4 HOH A 14 714 7 HOH HOH . G 4 HOH A 15 715 45 HOH HOH . G 4 HOH A 16 716 20 HOH HOH . G 4 HOH A 17 717 1 HOH HOH . G 4 HOH A 18 718 28 HOH HOH . G 4 HOH A 19 719 5 HOH HOH . G 4 HOH A 20 720 48 HOH HOH . G 4 HOH A 21 721 2 HOH HOH . G 4 HOH A 22 722 12 HOH HOH . G 4 HOH A 23 723 6 HOH HOH . G 4 HOH A 24 724 40 HOH HOH . G 4 HOH A 25 725 11 HOH HOH . G 4 HOH A 26 726 36 HOH HOH . G 4 HOH A 27 727 30 HOH HOH . G 4 HOH A 28 728 4 HOH HOH . G 4 HOH A 29 729 8 HOH HOH . H 4 HOH B 1 701 62 HOH HOH . H 4 HOH B 2 702 23 HOH HOH . H 4 HOH B 3 703 9 HOH HOH . H 4 HOH B 4 704 68 HOH HOH . H 4 HOH B 5 705 67 HOH HOH . H 4 HOH B 6 706 33 HOH HOH . H 4 HOH B 7 707 60 HOH HOH . H 4 HOH B 8 708 58 HOH HOH . H 4 HOH B 9 709 24 HOH HOH . H 4 HOH B 10 710 22 HOH HOH . H 4 HOH B 11 711 51 HOH HOH . H 4 HOH B 12 712 44 HOH HOH . H 4 HOH B 13 713 72 HOH HOH . H 4 HOH B 14 714 10 HOH HOH . H 4 HOH B 15 715 53 HOH HOH . H 4 HOH B 16 716 46 HOH HOH . H 4 HOH B 17 717 70 HOH HOH . H 4 HOH B 18 718 73 HOH HOH . H 4 HOH B 19 719 69 HOH HOH . H 4 HOH B 20 720 32 HOH HOH . H 4 HOH B 21 721 66 HOH HOH . H 4 HOH B 22 722 21 HOH HOH . H 4 HOH B 23 723 54 HOH HOH . H 4 HOH B 24 724 26 HOH HOH . H 4 HOH B 25 725 52 HOH HOH . H 4 HOH B 26 726 37 HOH HOH . H 4 HOH B 27 727 50 HOH HOH . H 4 HOH B 28 728 61 HOH HOH . H 4 HOH B 29 729 63 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 55.851 _atom_site.Cartn_y -9.682 _atom_site.Cartn_z 0.661 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #