data_7MJD # _model_server_result.job_id Bo80cWwElZzVT5tz4t07lg _model_server_result.datetime_utc '2025-02-05 14:56:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":607}' # _entry.id 7MJD # _exptl.entry_id 7MJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MJD _cell.length_a 102.04 _cell.length_b 102.04 _cell.length_c 186.037 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N ? 5 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 37 A THR 39 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc2 A O VAL 38 A VAL 40 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 A O ASP 107 A ASP 109 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 A OD1 ASP 107 A ASP 109 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A O GLN 194 A GLN 196 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc6 C NA NA . A NA 601 1_555 CA O HOH . A HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc7 B OG1 THR 37 B THR 39 1_555 Q NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc8 B O VAL 38 B VAL 40 1_555 Q NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc9 B O ASP 107 B ASP 109 1_555 Q NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc10 B OD1 ASP 107 B ASP 109 1_555 Q NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc11 B O GLN 194 B GLN 196 1_555 Q NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc12 Q NA NA . B NA 601 1_555 DA O HOH . B HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 7MJD _atom_sites.fract_transf_matrix[1][1] 0.0098 _atom_sites.fract_transf_matrix[1][2] 0.005658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 601 1 NA NA . D 3 NAD A 1 602 4 NAD ZRF . E 4 ZGG A 1 603 1 ZGG JDZ . F 5 1PE A 1 604 2 1PE 1PE . G 5 1PE A 1 605 3 1PE 1PE . H 5 1PE A 1 606 4 1PE 1PE . I 5 1PE A 1 607 6 1PE 1PE . J 5 1PE A 1 608 8 1PE 1PE . K 5 1PE A 1 609 10 1PE 1PE . L 5 1PE A 1 610 11 1PE 1PE . M 5 1PE A 1 611 12 1PE 1PE . N 5 1PE A 1 612 15 1PE 1PE . O 5 1PE A 1 613 17 1PE 1PE . P 5 1PE A 1 614 21 1PE 1PE . Q 2 NA B 1 601 2 NA NA . R 3 NAD B 1 602 3 NAD ZRF . S 4 ZGG B 1 603 2 ZGG JDZ . T 6 GOL B 1 604 1 GOL GOL . U 6 GOL B 1 605 2 GOL GOL . V 5 1PE B 1 606 1 1PE 1PE . W 5 1PE B 1 607 5 1PE 1PE . X 5 1PE B 1 608 7 1PE 1PE . Y 5 1PE B 1 609 13 1PE 1PE . Z 5 1PE B 1 610 14 1PE 1PE . AA 5 1PE B 1 611 18 1PE 1PE . BA 5 1PE B 1 612 20 1PE 1PE . CA 7 HOH A 1 701 58 HOH HOH . CA 7 HOH A 2 702 169 HOH HOH . CA 7 HOH A 3 703 41 HOH HOH . CA 7 HOH A 4 704 30 HOH HOH . CA 7 HOH A 5 705 21 HOH HOH . CA 7 HOH A 6 706 31 HOH HOH . CA 7 HOH A 7 707 139 HOH HOH . CA 7 HOH A 8 708 55 HOH HOH . CA 7 HOH A 9 709 10 HOH HOH . CA 7 HOH A 10 710 22 HOH HOH . CA 7 HOH A 11 711 26 HOH HOH . CA 7 HOH A 12 712 105 HOH HOH . CA 7 HOH A 13 713 171 HOH HOH . CA 7 HOH A 14 714 24 HOH HOH . CA 7 HOH A 15 715 9 HOH HOH . CA 7 HOH A 16 716 40 HOH HOH . CA 7 HOH A 17 717 156 HOH HOH . CA 7 HOH A 18 718 122 HOH HOH . CA 7 HOH A 19 719 113 HOH HOH . CA 7 HOH A 20 720 129 HOH HOH . CA 7 HOH A 21 721 178 HOH HOH . CA 7 HOH A 22 722 20 HOH HOH . CA 7 HOH A 23 723 110 HOH HOH . CA 7 HOH A 24 724 97 HOH HOH . CA 7 HOH A 25 725 42 HOH HOH . CA 7 HOH A 26 726 50 HOH HOH . CA 7 HOH A 27 727 154 HOH HOH . CA 7 HOH A 28 728 1 HOH HOH . CA 7 HOH A 29 729 135 HOH HOH . CA 7 HOH A 30 730 79 HOH HOH . CA 7 HOH A 31 731 16 HOH HOH . CA 7 HOH A 32 732 53 HOH HOH . CA 7 HOH A 33 733 142 HOH HOH . CA 7 HOH A 34 734 101 HOH HOH . CA 7 HOH A 35 735 107 HOH HOH . CA 7 HOH A 36 736 13 HOH HOH . CA 7 HOH A 37 737 5 HOH HOH . CA 7 HOH A 38 738 15 HOH HOH . CA 7 HOH A 39 739 143 HOH HOH . CA 7 HOH A 40 740 106 HOH HOH . CA 7 HOH A 41 741 67 HOH HOH . CA 7 HOH A 42 742 8 HOH HOH . CA 7 HOH A 43 743 63 HOH HOH . CA 7 HOH A 44 744 157 HOH HOH . CA 7 HOH A 45 745 51 HOH HOH . CA 7 HOH A 46 746 96 HOH HOH . CA 7 HOH A 47 747 162 HOH HOH . CA 7 HOH A 48 748 37 HOH HOH . CA 7 HOH A 49 749 81 HOH HOH . CA 7 HOH A 50 750 23 HOH HOH . CA 7 HOH A 51 751 166 HOH HOH . CA 7 HOH A 52 752 109 HOH HOH . CA 7 HOH A 53 753 27 HOH HOH . CA 7 HOH A 54 754 121 HOH HOH . CA 7 HOH A 55 755 112 HOH HOH . CA 7 HOH A 56 756 56 HOH HOH . CA 7 HOH A 57 757 155 HOH HOH . CA 7 HOH A 58 758 11 HOH HOH . CA 7 HOH A 59 759 89 HOH HOH . CA 7 HOH A 60 760 2 HOH HOH . CA 7 HOH A 61 761 85 HOH HOH . CA 7 HOH A 62 762 165 HOH HOH . CA 7 HOH A 63 763 102 HOH HOH . CA 7 HOH A 64 764 145 HOH HOH . CA 7 HOH A 65 765 94 HOH HOH . CA 7 HOH A 66 766 6 HOH HOH . CA 7 HOH A 67 767 128 HOH HOH . CA 7 HOH A 68 768 57 HOH HOH . CA 7 HOH A 69 769 151 HOH HOH . CA 7 HOH A 70 770 175 HOH HOH . CA 7 HOH A 71 771 118 HOH HOH . CA 7 HOH A 72 772 62 HOH HOH . CA 7 HOH A 73 773 68 HOH HOH . CA 7 HOH A 74 774 174 HOH HOH . CA 7 HOH A 75 775 95 HOH HOH . CA 7 HOH A 76 776 179 HOH HOH . CA 7 HOH A 77 777 103 HOH HOH . CA 7 HOH A 78 778 163 HOH HOH . CA 7 HOH A 79 779 78 HOH HOH . CA 7 HOH A 80 780 60 HOH HOH . CA 7 HOH A 81 781 73 HOH HOH . CA 7 HOH A 82 782 104 HOH HOH . CA 7 HOH A 83 783 25 HOH HOH . CA 7 HOH A 84 784 181 HOH HOH . CA 7 HOH A 85 785 116 HOH HOH . CA 7 HOH A 86 786 152 HOH HOH . CA 7 HOH A 87 787 173 HOH HOH . CA 7 HOH A 88 788 182 HOH HOH . CA 7 HOH A 89 789 93 HOH HOH . CA 7 HOH A 90 790 71 HOH HOH . CA 7 HOH A 91 791 133 HOH HOH . CA 7 HOH A 92 792 91 HOH HOH . CA 7 HOH A 93 793 185 HOH HOH . CA 7 HOH A 94 794 190 HOH HOH . CA 7 HOH A 95 795 138 HOH HOH . CA 7 HOH A 96 796 72 HOH HOH . CA 7 HOH A 97 797 119 HOH HOH . CA 7 HOH A 98 798 74 HOH HOH . CA 7 HOH A 99 799 134 HOH HOH . CA 7 HOH A 100 800 77 HOH HOH . CA 7 HOH A 101 801 69 HOH HOH . CA 7 HOH A 102 802 146 HOH HOH . CA 7 HOH A 103 803 160 HOH HOH . CA 7 HOH A 104 804 75 HOH HOH . CA 7 HOH A 105 805 64 HOH HOH . CA 7 HOH A 106 806 149 HOH HOH . CA 7 HOH A 107 807 80 HOH HOH . CA 7 HOH A 108 808 114 HOH HOH . CA 7 HOH A 109 809 117 HOH HOH . CA 7 HOH A 110 810 137 HOH HOH . CA 7 HOH A 111 811 170 HOH HOH . DA 7 HOH B 1 701 186 HOH HOH . DA 7 HOH B 2 702 161 HOH HOH . DA 7 HOH B 3 703 148 HOH HOH . DA 7 HOH B 4 704 176 HOH HOH . DA 7 HOH B 5 705 3 HOH HOH . DA 7 HOH B 6 706 48 HOH HOH . DA 7 HOH B 7 707 39 HOH HOH . DA 7 HOH B 8 708 180 HOH HOH . DA 7 HOH B 9 709 18 HOH HOH . DA 7 HOH B 10 710 108 HOH HOH . DA 7 HOH B 11 711 65 HOH HOH . DA 7 HOH B 12 712 150 HOH HOH . DA 7 HOH B 13 713 82 HOH HOH . DA 7 HOH B 14 714 34 HOH HOH . DA 7 HOH B 15 715 44 HOH HOH . DA 7 HOH B 16 716 187 HOH HOH . DA 7 HOH B 17 717 52 HOH HOH . DA 7 HOH B 18 718 7 HOH HOH . DA 7 HOH B 19 719 19 HOH HOH . DA 7 HOH B 20 720 35 HOH HOH . DA 7 HOH B 21 721 14 HOH HOH . DA 7 HOH B 22 722 45 HOH HOH . DA 7 HOH B 23 723 47 HOH HOH . DA 7 HOH B 24 724 99 HOH HOH . DA 7 HOH B 25 725 127 HOH HOH . DA 7 HOH B 26 726 54 HOH HOH . DA 7 HOH B 27 727 177 HOH HOH . DA 7 HOH B 28 728 38 HOH HOH . DA 7 HOH B 29 729 159 HOH HOH . DA 7 HOH B 30 730 76 HOH HOH . DA 7 HOH B 31 731 136 HOH HOH . DA 7 HOH B 32 732 59 HOH HOH . DA 7 HOH B 33 733 12 HOH HOH . DA 7 HOH B 34 734 36 HOH HOH . DA 7 HOH B 35 735 124 HOH HOH . DA 7 HOH B 36 736 115 HOH HOH . DA 7 HOH B 37 737 46 HOH HOH . DA 7 HOH B 38 738 4 HOH HOH . DA 7 HOH B 39 739 29 HOH HOH . DA 7 HOH B 40 740 49 HOH HOH . DA 7 HOH B 41 741 66 HOH HOH . DA 7 HOH B 42 742 125 HOH HOH . DA 7 HOH B 43 743 100 HOH HOH . DA 7 HOH B 44 744 43 HOH HOH . DA 7 HOH B 45 745 33 HOH HOH . DA 7 HOH B 46 746 158 HOH HOH . DA 7 HOH B 47 747 140 HOH HOH . DA 7 HOH B 48 748 98 HOH HOH . DA 7 HOH B 49 749 32 HOH HOH . DA 7 HOH B 50 750 147 HOH HOH . DA 7 HOH B 51 751 167 HOH HOH . DA 7 HOH B 52 752 90 HOH HOH . DA 7 HOH B 53 753 184 HOH HOH . DA 7 HOH B 54 754 172 HOH HOH . DA 7 HOH B 55 755 87 HOH HOH . DA 7 HOH B 56 756 188 HOH HOH . DA 7 HOH B 57 757 83 HOH HOH . DA 7 HOH B 58 758 168 HOH HOH . DA 7 HOH B 59 759 153 HOH HOH . DA 7 HOH B 60 760 120 HOH HOH . DA 7 HOH B 61 761 189 HOH HOH . DA 7 HOH B 62 762 132 HOH HOH . DA 7 HOH B 63 763 92 HOH HOH . DA 7 HOH B 64 764 88 HOH HOH . DA 7 HOH B 65 765 86 HOH HOH . DA 7 HOH B 66 766 70 HOH HOH . DA 7 HOH B 67 767 111 HOH HOH . DA 7 HOH B 68 768 130 HOH HOH . DA 7 HOH B 69 769 123 HOH HOH . DA 7 HOH B 70 770 84 HOH HOH . DA 7 HOH B 71 771 183 HOH HOH . DA 7 HOH B 72 772 164 HOH HOH . DA 7 HOH B 73 773 61 HOH HOH . DA 7 HOH B 74 774 141 HOH HOH . DA 7 HOH B 75 775 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH6 1PE . . . I 5 -33.219 -35.811 -35.062 0.5 41.51 ? OH6 1PE 607 A 1 HETATM 2 C C16 1PE . . . I 5 -31.547 -34.208 -34.307 0.5 40.83 ? C16 1PE 607 A 1 HETATM 3 C C26 1PE . . . I 5 -32.433 -34.67 -35.441 0.5 41.36 ? C26 1PE 607 A 1 HETATM 4 O OH7 1PE . . . I 5 -32.218 -33.149 -33.583 0.5 39.79 ? OH7 1PE 607 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #