data_7MJO # _model_server_result.job_id 3-n3nv5Pnv4Q2pwGyHFceQ _model_server_result.datetime_utc '2024-12-21 15:11:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1602}' # _entry.id 7MJO # _exptl.entry_id 7MJO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 494.004 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 N 1 NAG N 601 NAG 3 n G NAG 2 N 2 NAG N 602 NAG 3 n H NAG 1 F 1 NAG N 607 NAG 3 n H NAG 2 F 2 NAG N 608 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 120 B CYS 120 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? disulf ? disulf3 C SG CYS 120 C CYS 120 1_555 C SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 120 D CYS 120 1_555 D SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 24 E CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 E SG CYS 1407 E CYS 1407 1_555 E SG CYS 1409 E CYS 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 F SG CYS 6 G CYS 6 1_555 F SG CYS 24 G CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 E ND2 ASN 9 E ASN 9 1_555 G C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 F ND2 ASN 9 G ASN 9 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 G O4 NAG . N NAG 1 1_555 G C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A O THR 140 A THR 140 1_555 I K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc2 A OG1 THR 140 A THR 140 1_555 I K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 I K K . A K 501 1_555 B O THR 140 B THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc4 I K K . A K 501 1_555 B OG1 THR 140 B THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.204 ? metalc ? metalc5 I K K . A K 501 1_555 C O THR 140 C THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc6 I K K . A K 501 1_555 C OG1 THR 140 C THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc7 I K K . A K 501 1_555 D O THR 140 D THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 I K K . A K 501 1_555 D OG1 THR 140 D THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'C23 H28 Cl N3 O5 S' _chem_comp.formula_weight 494.004 _chem_comp.id GBM _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Glibenclamide;Glyburide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C31 GBM sing 132 n n C31 C29 GBM doub 133 n y C31 C32 GBM sing 134 n y C29 C27 GBM sing 135 n y C32 C30 GBM doub 136 n y O6 C26 GBM doub 137 n n C27 C26 GBM sing 138 n n C27 C28 GBM doub 139 n y C30 C28 GBM sing 140 n y C26 N10 GBM sing 141 n n C28 O7 GBM sing 142 n n O3 C17 GBM doub 143 n n N10 C25 GBM sing 144 n n C23 C21 GBM doub 145 n y C23 C19 GBM sing 146 n y O7 C33 GBM sing 147 n n C21 C18 GBM sing 148 n y C25 C20 GBM sing 149 n n N9 C17 GBM sing 150 n n N9 S2 GBM sing 151 n n C17 N8 GBM sing 152 n n C20 C19 GBM sing 153 n n C19 C24 GBM doub 154 n y O5 S2 GBM doub 155 n n C18 S2 GBM sing 156 n n C18 C22 GBM doub 157 n y C14 C12 GBM sing 158 n n C14 C16 GBM sing 159 n n C13 C11 GBM sing 160 n n C13 C15 GBM sing 161 n n S2 O4 GBM doub 162 n n C12 C11 GBM sing 163 n n N8 C11 GBM sing 164 n n C15 C16 GBM sing 165 n n C24 C22 GBM sing 166 n y N8 H1 GBM sing 167 n n N9 H2 GBM sing 168 n n N10 H3 GBM sing 169 n n C11 H4 GBM sing 170 n n C12 H5 GBM sing 171 n n C12 H6 GBM sing 172 n n C13 H7 GBM sing 173 n n C13 H8 GBM sing 174 n n C14 H9 GBM sing 175 n n C14 H10 GBM sing 176 n n C15 H11 GBM sing 177 n n C15 H12 GBM sing 178 n n C16 H13 GBM sing 179 n n C16 H14 GBM sing 180 n n C20 H15 GBM sing 181 n n C20 H16 GBM sing 182 n n C21 H17 GBM sing 183 n n C22 H18 GBM sing 184 n n C23 H19 GBM sing 185 n n C24 H20 GBM sing 186 n n C25 H21 GBM sing 187 n n C25 H22 GBM sing 188 n n C29 H23 GBM sing 189 n n C30 H24 GBM sing 190 n n C32 H25 GBM sing 191 n n C33 H26 GBM sing 192 n n C33 H27 GBM sing 193 n n C33 H28 GBM sing 194 n n # _atom_sites.entry_id 7MJO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 K A 1 501 1 K K . J 4 K A 1 502 3001 K K . K 5 ATP A 1 503 401 ATP ATP . L 6 PTY A 1 504 101 PTY PTY . M 6 PTY A 1 505 201 PTY PTY . N 6 PTY A 1 506 410 PTY PTY . O 6 PTY A 1 507 501 PTY PTY . P 5 ATP B 1 501 402 ATP ATP . Q 5 ATP B 1 502 403 ATP ATP . R 7 POV B 1 503 601 POV POV . S 5 ATP C 1 501 404 ATP ATP . T 6 PTY C 1 502 301 PTY PTY . U 6 PTY C 1 503 420 PTY PTY . V 7 POV C 1 504 701 POV POV . W 7 POV D 1 801 801 POV POV . X 6 PTY D 1 802 901 PTY PTY . Y 5 ATP E 1 1601 405 ATP ATP . Z 8 GBM E 1 1602 2101 GBM GBM . AA 6 PTY E 1 1603 710 PTY PTY . BA 6 PTY E 1 1604 1611 PTY PTY . CA 6 PTY E 1 1605 2701 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 GBM . . . Z 8 189.852 262.931 210.685 1 44.56 0 O3 GBM 1602 E 1 HETATM 2 O O4 GBM . . . Z 8 189.486 262.147 213.251 1 44.56 0 O4 GBM 1602 E 1 HETATM 3 O O5 GBM . . . Z 8 187.19 260.742 213.467 1 44.56 0 O5 GBM 1602 E 1 HETATM 4 O O6 GBM . . . Z 8 188.777 266.857 215.615 1 44.56 0 O6 GBM 1602 E 1 HETATM 5 CL CL1 GBM . . . Z 8 188.698 268.745 220.583 1 44.56 0 CL1 GBM 1602 E 1 HETATM 6 S S2 GBM . . . Z 8 187.951 261.969 212.669 1 44.56 0 S2 GBM 1602 E 1 HETATM 7 O O7 GBM . . . Z 8 184.872 266.556 216.581 1 44.56 0 O7 GBM 1602 E 1 HETATM 8 N N8 GBM . . . Z 8 189.086 261.93 208.777 1 44.56 0 N8 GBM 1602 E 1 HETATM 9 N N9 GBM . . . Z 8 188.004 261.626 211.002 1 44.56 0 N9 GBM 1602 E 1 HETATM 10 N N10 GBM . . . Z 8 187.041 267.671 214.439 1 44.56 0 N10 GBM 1602 E 1 HETATM 11 C C11 GBM . . . Z 8 188.06 261.05 208.218 1 44.56 0 C11 GBM 1602 E 1 HETATM 12 C C12 GBM . . . Z 8 188.609 260.366 206.958 1 44.56 0 C12 GBM 1602 E 1 HETATM 13 C C13 GBM . . . Z 8 186.794 261.878 207.978 1 44.56 0 C13 GBM 1602 E 1 HETATM 14 C C14 GBM . . . Z 8 188.202 261.057 205.661 1 44.56 0 C14 GBM 1602 E 1 HETATM 15 C C15 GBM . . . Z 8 186.893 262.868 206.817 1 44.56 0 C15 GBM 1602 E 1 HETATM 16 C C16 GBM . . . Z 8 188.044 262.564 205.855 1 44.56 0 C16 GBM 1602 E 1 HETATM 17 C C17 GBM . . . Z 8 189.044 262.222 210.192 1 44.56 0 C17 GBM 1602 E 1 HETATM 18 C C18 GBM . . . Z 8 187.042 263.525 212.89 1 44.56 0 C18 GBM 1602 E 1 HETATM 19 C C19 GBM . . . Z 8 185.655 265.896 213.242 1 44.56 0 C19 GBM 1602 E 1 HETATM 20 C C20 GBM . . . Z 8 184.885 267.203 213.453 1 44.56 0 C20 GBM 1602 E 1 HETATM 21 C C21 GBM . . . Z 8 187.081 264.499 211.908 1 44.56 0 C21 GBM 1602 E 1 HETATM 22 C C22 GBM . . . Z 8 186.312 263.732 214.046 1 44.56 0 C22 GBM 1602 E 1 HETATM 23 C C23 GBM . . . Z 8 186.386 265.687 212.082 1 44.56 0 C23 GBM 1602 E 1 HETATM 24 C C24 GBM . . . Z 8 185.619 264.918 214.217 1 44.56 0 C24 GBM 1602 E 1 HETATM 25 C C25 GBM . . . Z 8 185.707 268.217 214.255 1 44.56 0 C25 GBM 1602 E 1 HETATM 26 C C26 GBM . . . Z 8 187.674 267.281 215.693 1 44.56 0 C26 GBM 1602 E 1 HETATM 27 C C27 GBM . . . Z 8 187.091 267.421 217.107 1 44.56 0 C27 GBM 1602 E 1 HETATM 28 C C28 GBM . . . Z 8 185.795 267.079 217.486 1 44.56 0 C28 GBM 1602 E 1 HETATM 29 C C29 GBM . . . Z 8 187.957 267.922 218.064 1 44.56 0 C29 GBM 1602 E 1 HETATM 30 C C30 GBM . . . Z 8 185.397 267.246 218.803 1 44.56 0 C30 GBM 1602 E 1 HETATM 31 C C31 GBM . . . Z 8 187.556 268.091 219.377 1 44.56 0 C31 GBM 1602 E 1 HETATM 32 C C32 GBM . . . Z 8 186.27 267.751 219.749 1 44.56 0 C32 GBM 1602 E 1 HETATM 33 C C33 GBM . . . Z 8 183.537 266.836 216.882 1 44.56 0 C33 GBM 1602 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #