data_7MJO # _model_server_result.job_id KTKht1QoqZuvyEu3Hg9vsg _model_server_result.datetime_utc '2024-12-21 15:05:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":501}' # _entry.id 7MJO # _exptl.entry_id 7MJO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 P N N ? 5 Q N N ? 5 S N N ? 5 Y N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 N 1 NAG N 601 NAG 3 n G NAG 2 N 2 NAG N 602 NAG 3 n H NAG 1 F 1 NAG N 607 NAG 3 n H NAG 2 F 2 NAG N 608 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 120 B CYS 120 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? disulf ? disulf3 C SG CYS 120 C CYS 120 1_555 C SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 120 D CYS 120 1_555 D SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 24 E CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 E SG CYS 1407 E CYS 1407 1_555 E SG CYS 1409 E CYS 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 F SG CYS 6 G CYS 6 1_555 F SG CYS 24 G CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 E ND2 ASN 9 E ASN 9 1_555 G C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 F ND2 ASN 9 G ASN 9 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 G O4 NAG . N NAG 1 1_555 G C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A O THR 140 A THR 140 1_555 I K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc2 A OG1 THR 140 A THR 140 1_555 I K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 I K K . A K 501 1_555 B O THR 140 B THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc4 I K K . A K 501 1_555 B OG1 THR 140 B THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.204 ? metalc ? metalc5 I K K . A K 501 1_555 C O THR 140 C THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc6 I K K . A K 501 1_555 C OG1 THR 140 C THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc7 I K K . A K 501 1_555 D O THR 140 D THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 I K K . A K 501 1_555 D OG1 THR 140 D THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7MJO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 K A 1 501 1 K K . J 4 K A 1 502 3001 K K . K 5 ATP A 1 503 401 ATP ATP . L 6 PTY A 1 504 101 PTY PTY . M 6 PTY A 1 505 201 PTY PTY . N 6 PTY A 1 506 410 PTY PTY . O 6 PTY A 1 507 501 PTY PTY . P 5 ATP B 1 501 402 ATP ATP . Q 5 ATP B 1 502 403 ATP ATP . R 7 POV B 1 503 601 POV POV . S 5 ATP C 1 501 404 ATP ATP . T 6 PTY C 1 502 301 PTY PTY . U 6 PTY C 1 503 420 PTY PTY . V 7 POV C 1 504 701 POV POV . W 7 POV D 1 801 801 POV POV . X 6 PTY D 1 802 901 PTY PTY . Y 5 ATP E 1 1601 405 ATP ATP . Z 8 GBM E 1 1602 2101 GBM GBM . AA 6 PTY E 1 1603 710 PTY PTY . BA 6 PTY E 1 1604 1611 PTY PTY . CA 6 PTY E 1 1605 2701 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . S 5 226.173 185.585 192.26 1 0 0 PG ATP 501 C 1 HETATM 2 O O1G ATP . . . S 5 225.777 184.942 193.563 1 0 0 O1G ATP 501 C 1 HETATM 3 O O2G ATP . . . S 5 225.27 186.711 191.831 1 0 -1 O2G ATP 501 C 1 HETATM 4 O O3G ATP . . . S 5 226.545 184.624 191.16 1 0 0 O3G ATP 501 C 1 HETATM 5 P PB ATP . . . S 5 228.684 185.454 193.398 1 0 0 PB ATP 501 C 1 HETATM 6 O O1B ATP . . . S 5 228.469 183.99 193.112 1 0 -1 O1B ATP 501 C 1 HETATM 7 O O2B ATP . . . S 5 230.025 186.091 193.138 1 0 0 O2B ATP 501 C 1 HETATM 8 O O3B ATP . . . S 5 227.556 186.302 192.633 1 0 0 O3B ATP 501 C 1 HETATM 9 P PA ATP . . . S 5 227.879 187.245 195.329 1 0 0 PA ATP 501 C 1 HETATM 10 O O1A ATP . . . S 5 228.534 188.185 194.35 1 0 -1 O1A ATP 501 C 1 HETATM 11 O O2A ATP . . . S 5 228.116 187.442 196.806 1 0 0 O2A ATP 501 C 1 HETATM 12 O O3A ATP . . . S 5 228.253 185.741 194.916 1 0 0 O3A ATP 501 C 1 HETATM 13 O O5' ATP . . . S 5 226.303 187.275 195.031 1 0 0 O5' ATP 501 C 1 HETATM 14 C C5' ATP . . . S 5 225.739 188.406 194.379 1 0 0 C5' ATP 501 C 1 HETATM 15 C C4' ATP . . . S 5 224.234 188.37 194.561 1 0 0 C4' ATP 501 C 1 HETATM 16 O O4' ATP . . . S 5 223.78 187.017 194.579 1 0 0 O4' ATP 501 C 1 HETATM 17 C C3' ATP . . . S 5 223.875 188.989 195.899 1 0 0 C3' ATP 501 C 1 HETATM 18 O O3' ATP . . . S 5 223.021 190.115 195.699 1 0 0 O3' ATP 501 C 1 HETATM 19 C C2' ATP . . . S 5 223.151 187.907 196.662 1 0 0 C2' ATP 501 C 1 HETATM 20 O O2' ATP . . . S 5 221.961 188.43 197.249 1 0 0 O2' ATP 501 C 1 HETATM 21 C C1' ATP . . . S 5 222.805 186.875 195.609 1 0 0 C1' ATP 501 C 1 HETATM 22 N N9 ATP . . . S 5 222.806 185.515 196.19 1 0 0 N9 ATP 501 C 1 HETATM 23 C C8 ATP . . . S 5 223.516 184.461 195.758 1 0 0 C8 ATP 501 C 1 HETATM 24 N N7 ATP . . . S 5 223.267 183.363 196.514 1 0 0 N7 ATP 501 C 1 HETATM 25 C C5 ATP . . . S 5 222.371 183.716 197.448 1 0 0 C5 ATP 501 C 1 HETATM 26 C C6 ATP . . . S 5 221.677 183.044 198.565 1 0 0 C6 ATP 501 C 1 HETATM 27 N N6 ATP . . . S 5 221.894 181.738 198.84 1 0 0 N6 ATP 501 C 1 HETATM 28 N N1 ATP . . . S 5 220.818 183.778 199.301 1 0 0 N1 ATP 501 C 1 HETATM 29 C C2 ATP . . . S 5 220.591 185.076 199.039 1 0 0 C2 ATP 501 C 1 HETATM 30 N N3 ATP . . . S 5 221.186 185.746 198.041 1 0 0 N3 ATP 501 C 1 HETATM 31 C C4 ATP . . . S 5 222.068 185.132 197.226 1 0 0 C4 ATP 501 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #