data_7MJO # _model_server_result.job_id aSB8FHkQzMLVpeRHDBiAEA _model_server_result.datetime_utc '2024-12-21 15:11:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":503}' # _entry.id 7MJO # _exptl.entry_id 7MJO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 R N N ? 7 V N N ? 7 W N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 N 1 NAG N 601 NAG 3 n G NAG 2 N 2 NAG N 602 NAG 3 n H NAG 1 F 1 NAG N 607 NAG 3 n H NAG 2 F 2 NAG N 608 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 120 B CYS 120 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? disulf ? disulf3 C SG CYS 120 C CYS 120 1_555 C SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 120 D CYS 120 1_555 D SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 24 E CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 E SG CYS 1407 E CYS 1407 1_555 E SG CYS 1409 E CYS 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 F SG CYS 6 G CYS 6 1_555 F SG CYS 24 G CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 E ND2 ASN 9 E ASN 9 1_555 G C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 F ND2 ASN 9 G ASN 9 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 G O4 NAG . N NAG 1 1_555 G C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A O THR 140 A THR 140 1_555 I K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc2 A OG1 THR 140 A THR 140 1_555 I K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 I K K . A K 501 1_555 B O THR 140 B THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc4 I K K . A K 501 1_555 B OG1 THR 140 B THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.204 ? metalc ? metalc5 I K K . A K 501 1_555 C O THR 140 C THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc6 I K K . A K 501 1_555 C OG1 THR 140 C THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc7 I K K . A K 501 1_555 D O THR 140 D THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 I K K . A K 501 1_555 D OG1 THR 140 D THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 400 n n N C13 POV sing 401 n n N C14 POV sing 402 n n N C15 POV sing 403 n n P O11 POV sing 404 n n P O12 POV sing 405 n n P O13 POV sing 406 n n P O14 POV doub 407 n n C1 C2 POV sing 408 n n C1 O11 POV sing 409 n n C1 H1 POV sing 410 n n C1 H1A POV sing 411 n n C2 C3 POV sing 412 n n C2 O21 POV sing 413 n n C2 H2 POV sing 414 n n C3 O31 POV sing 415 n n C3 H3 POV sing 416 n n C3 H3A POV sing 417 n n C210 C211 POV sing 418 n n C210 C29 POV doub 419 z n C210 H210 POV sing 420 n n C310 C311 POV sing 421 n n C310 C39 POV sing 422 n n C310 H310 POV sing 423 n n C310 H31A POV sing 424 n n C11 C12 POV sing 425 n n C11 O12 POV sing 426 n n C11 H11 POV sing 427 n n C11 H11A POV sing 428 n n C211 C212 POV sing 429 n n C211 H211 POV sing 430 n n C211 H21A POV sing 431 n n C311 C312 POV sing 432 n n C311 H311 POV sing 433 n n C311 H31B POV sing 434 n n C12 H12 POV sing 435 n n C12 H12A POV sing 436 n n C212 C213 POV sing 437 n n C212 H212 POV sing 438 n n C212 H21B POV sing 439 n n C312 C313 POV sing 440 n n C312 H312 POV sing 441 n n C312 H31C POV sing 442 n n C13 H13 POV sing 443 n n C13 H13A POV sing 444 n n C13 H13B POV sing 445 n n C213 C214 POV sing 446 n n C213 H213 POV sing 447 n n C213 H21C POV sing 448 n n C313 C314 POV sing 449 n n C313 H313 POV sing 450 n n C313 H31D POV sing 451 n n C14 H14 POV sing 452 n n C14 H14A POV sing 453 n n C14 H14B POV sing 454 n n C214 C215 POV sing 455 n n C214 H214 POV sing 456 n n C214 H21D POV sing 457 n n C314 C315 POV sing 458 n n C314 H314 POV sing 459 n n C314 H31E POV sing 460 n n C15 H15 POV sing 461 n n C15 H15A POV sing 462 n n C15 H15B POV sing 463 n n C215 C216 POV sing 464 n n C215 H215 POV sing 465 n n C215 H21E POV sing 466 n n C315 C316 POV sing 467 n n C315 H315 POV sing 468 n n C315 H31F POV sing 469 n n C216 C217 POV sing 470 n n C216 H216 POV sing 471 n n C216 H21F POV sing 472 n n C316 H316 POV sing 473 n n C316 H31G POV sing 474 n n C316 H31H POV sing 475 n n C217 C218 POV sing 476 n n C217 H217 POV sing 477 n n C217 H21G POV sing 478 n n C218 H218 POV sing 479 n n C218 H21H POV sing 480 n n C218 H21J POV sing 481 n n C21 O21 POV sing 482 n n C21 C22 POV sing 483 n n C21 O22 POV doub 484 n n C22 C23 POV sing 485 n n C22 H22 POV sing 486 n n C22 H22A POV sing 487 n n C23 C24 POV sing 488 n n C23 H23 POV sing 489 n n C23 H23A POV sing 490 n n C24 C25 POV sing 491 n n C24 H24 POV sing 492 n n C24 H24A POV sing 493 n n C25 C26 POV sing 494 n n C25 H25 POV sing 495 n n C25 H25A POV sing 496 n n C26 C27 POV sing 497 n n C26 H26 POV sing 498 n n C26 H26A POV sing 499 n n C27 C28 POV sing 500 n n C27 H27 POV sing 501 n n C27 H27A POV sing 502 n n C28 C29 POV sing 503 n n C28 H28 POV sing 504 n n C28 H28A POV sing 505 n n C29 H29 POV sing 506 n n C31 O31 POV sing 507 n n C31 C32 POV sing 508 n n C31 O32 POV doub 509 n n C32 C33 POV sing 510 n n C32 H32 POV sing 511 n n C32 H32A POV sing 512 n n C33 C34 POV sing 513 n n C33 H33 POV sing 514 n n C33 H33A POV sing 515 n n C34 C35 POV sing 516 n n C34 H34 POV sing 517 n n C34 H34A POV sing 518 n n C35 C36 POV sing 519 n n C35 H35 POV sing 520 n n C35 H35A POV sing 521 n n C36 C37 POV sing 522 n n C36 H36 POV sing 523 n n C36 H36A POV sing 524 n n C37 C38 POV sing 525 n n C37 H37 POV sing 526 n n C37 H37A POV sing 527 n n C38 C39 POV sing 528 n n C38 H38 POV sing 529 n n C38 H38A POV sing 530 n n C39 H39 POV sing 531 n n C39 H39A POV sing 532 n n # _atom_sites.entry_id 7MJO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 K A 1 501 1 K K . J 4 K A 1 502 3001 K K . K 5 ATP A 1 503 401 ATP ATP . L 6 PTY A 1 504 101 PTY PTY . M 6 PTY A 1 505 201 PTY PTY . N 6 PTY A 1 506 410 PTY PTY . O 6 PTY A 1 507 501 PTY PTY . P 5 ATP B 1 501 402 ATP ATP . Q 5 ATP B 1 502 403 ATP ATP . R 7 POV B 1 503 601 POV POV . S 5 ATP C 1 501 404 ATP ATP . T 6 PTY C 1 502 301 PTY PTY . U 6 PTY C 1 503 420 PTY PTY . V 7 POV C 1 504 701 POV POV . W 7 POV D 1 801 801 POV POV . X 6 PTY D 1 802 901 PTY PTY . Y 5 ATP E 1 1601 405 ATP ATP . Z 8 GBM E 1 1602 2101 GBM GBM . AA 6 PTY E 1 1603 710 PTY PTY . BA 6 PTY E 1 1604 1611 PTY PTY . CA 6 PTY E 1 1605 2701 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . R 7 176.872 195.054 260.136 1 121.05 0 N POV 503 B 1 HETATM 2 P P POV . . . R 7 176 193.402 255.783 1 121.05 0 P POV 503 B 1 HETATM 3 C C1 POV . . . R 7 174.269 193.35 253.832 1 121.05 0 C1 POV 503 B 1 HETATM 4 C C2 POV . . . R 7 173.929 194.019 252.5 1 121.05 0 C2 POV 503 B 1 HETATM 5 C C3 POV . . . R 7 174.529 193.195 251.357 1 121.05 0 C3 POV 503 B 1 HETATM 6 C C210 POV . . . R 7 170.259 199.424 243.991 1 121.05 0 C210 POV 503 B 1 HETATM 7 C C11 POV . . . R 7 175.642 193.856 258.336 1 121.05 0 C11 POV 503 B 1 HETATM 8 O O11 POV . . . R 7 175.214 194.142 254.523 1 121.05 0 O11 POV 503 B 1 HETATM 9 C C12 POV . . . R 7 176.871 193.825 259.288 1 121.05 0 C12 POV 503 B 1 HETATM 10 O O12 POV . . . R 7 176.052 194.41 257.097 1 121.05 0 O12 POV 503 B 1 HETATM 11 C C13 POV . . . R 7 178.081 194.984 260.979 1 121.05 0 C13 POV 503 B 1 HETATM 12 O O13 POV . . . R 7 175.247 192.154 256.166 1 121.05 -1 O13 POV 503 B 1 HETATM 13 C C14 POV . . . R 7 176.872 196.383 259.486 1 121.05 0 C14 POV 503 B 1 HETATM 14 O O14 POV . . . R 7 177.401 193.043 255.359 1 121.05 0 O14 POV 503 B 1 HETATM 15 C C15 POV . . . R 7 175.655 194.997 260.967 1 121.05 0 C15 POV 503 B 1 HETATM 16 C C21 POV . . . R 7 173.574 196.286 251.993 1 121.05 0 C21 POV 503 B 1 HETATM 17 O O21 POV . . . R 7 174.473 195.303 252.477 1 121.05 0 O21 POV 503 B 1 HETATM 18 C C22 POV . . . R 7 173.282 196.398 250.471 1 121.05 0 C22 POV 503 B 1 HETATM 19 O O22 POV . . . R 7 173.051 197.028 252.754 1 121.05 0 O22 POV 503 B 1 HETATM 20 C C23 POV . . . R 7 173.137 197.87 249.994 1 121.05 0 C23 POV 503 B 1 HETATM 21 C C24 POV . . . R 7 173.566 198.057 248.511 1 121.05 0 C24 POV 503 B 1 HETATM 22 C C25 POV . . . R 7 173.142 196.865 247.612 1 121.05 0 C25 POV 503 B 1 HETATM 23 C C26 POV . . . R 7 173.976 196.794 246.307 1 121.05 0 C26 POV 503 B 1 HETATM 24 C C27 POV . . . R 7 173.091 196.931 245.038 1 121.05 0 C27 POV 503 B 1 HETATM 25 C C28 POV . . . R 7 172.334 198.284 244.994 1 121.05 0 C28 POV 503 B 1 HETATM 26 C C29 POV . . . R 7 171.394 198.401 243.768 1 121.05 0 C29 POV 503 B 1 HETATM 27 C C31 POV . . . R 7 173.873 192.181 249.323 1 121.05 0 C31 POV 503 B 1 HETATM 28 O O31 POV . . . R 7 173.565 193.141 250.323 1 121.05 0 O31 POV 503 B 1 HETATM 29 C C32 POV . . . R 7 173.236 192.294 247.916 1 121.05 0 C32 POV 503 B 1 HETATM 30 O O32 POV . . . R 7 174.625 191.294 249.564 1 121.05 0 O32 POV 503 B 1 HETATM 31 C C33 POV . . . R 7 173.891 191.317 246.902 1 121.05 0 C33 POV 503 B 1 HETATM 32 C C34 POV . . . R 7 173.634 191.749 245.432 1 121.05 0 C34 POV 503 B 1 HETATM 33 C C35 POV . . . R 7 174.935 191.75 244.585 1 121.05 0 C35 POV 503 B 1 HETATM 34 C C36 POV . . . R 7 174.642 191.957 243.076 1 121.05 0 C36 POV 503 B 1 HETATM 35 C C37 POV . . . R 7 173.565 193.045 242.84 1 121.05 0 C37 POV 503 B 1 HETATM 36 C C38 POV . . . R 7 173.43 193.413 241.346 1 121.05 0 C38 POV 503 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #