data_7MJO # _model_server_result.job_id ExOqcbSBMRu1kfdrRQieZg _model_server_result.datetime_utc '2024-12-21 14:32:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":505}' # _entry.id 7MJO # _exptl.entry_id 7MJO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 T N N ? 6 U N N ? 6 X N N ? 6 AA N N ? 6 BA N N ? 6 CA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 N 1 NAG N 601 NAG 3 n G NAG 2 N 2 NAG N 602 NAG 3 n H NAG 1 F 1 NAG N 607 NAG 3 n H NAG 2 F 2 NAG N 608 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 120 B CYS 120 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? disulf ? disulf3 C SG CYS 120 C CYS 120 1_555 C SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 120 D CYS 120 1_555 D SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 24 E CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 E SG CYS 1407 E CYS 1407 1_555 E SG CYS 1409 E CYS 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 F SG CYS 6 G CYS 6 1_555 F SG CYS 24 G CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 E ND2 ASN 9 E ASN 9 1_555 G C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 F ND2 ASN 9 G ASN 9 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 G O4 NAG . N NAG 1 1_555 G C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A O THR 140 A THR 140 1_555 I K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc2 A OG1 THR 140 A THR 140 1_555 I K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 I K K . A K 501 1_555 B O THR 140 B THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc4 I K K . A K 501 1_555 B OG1 THR 140 B THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.204 ? metalc ? metalc5 I K K . A K 501 1_555 C O THR 140 C THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc6 I K K . A K 501 1_555 C OG1 THR 140 C THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc7 I K K . A K 501 1_555 D O THR 140 D THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 I K K . A K 501 1_555 D OG1 THR 140 D THR 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 550 n n C1 C6 PTY sing 551 n n C1 HC11 PTY sing 552 n n C1 HC12 PTY sing 553 n n C2 C3 PTY sing 554 n n C2 N1 PTY sing 555 n n C2 HC21 PTY sing 556 n n C2 HC22 PTY sing 557 n n C3 O11 PTY sing 558 n n C3 HC31 PTY sing 559 n n C3 HC32 PTY sing 560 n n O4 C30 PTY sing 561 n n C5 C6 PTY sing 562 n n C5 O14 PTY sing 563 n n C5 HC51 PTY sing 564 n n C5 HC52 PTY sing 565 n n C6 O7 PTY sing 566 n n C6 HC6 PTY sing 567 n n O7 C8 PTY sing 568 n n C8 O10 PTY doub 569 n n C8 C11 PTY sing 570 n n C11 C12 PTY sing 571 n n C11 H111 PTY sing 572 n n C11 H112 PTY sing 573 n n C12 C13 PTY sing 574 n n C12 H121 PTY sing 575 n n C12 H122 PTY sing 576 n n C13 C14 PTY sing 577 n n C13 H131 PTY sing 578 n n C13 H132 PTY sing 579 n n C14 C15 PTY sing 580 n n C14 H141 PTY sing 581 n n C14 H142 PTY sing 582 n n C15 C16 PTY sing 583 n n C15 H151 PTY sing 584 n n C15 H152 PTY sing 585 n n C16 C17 PTY sing 586 n n C16 H161 PTY sing 587 n n C16 H162 PTY sing 588 n n C17 C18 PTY sing 589 n n C17 H171 PTY sing 590 n n C17 H172 PTY sing 591 n n C18 C19 PTY sing 592 n n C18 H181 PTY sing 593 n n C18 H182 PTY sing 594 n n C19 C20 PTY sing 595 n n C19 H191 PTY sing 596 n n C19 H192 PTY sing 597 n n C20 C21 PTY sing 598 n n C20 H201 PTY sing 599 n n C20 H202 PTY sing 600 n n C21 C22 PTY sing 601 n n C21 H211 PTY sing 602 n n C21 H212 PTY sing 603 n n C22 C23 PTY sing 604 n n C22 H221 PTY sing 605 n n C22 H222 PTY sing 606 n n C23 C24 PTY sing 607 n n C23 H231 PTY sing 608 n n C23 H232 PTY sing 609 n n C24 C25 PTY sing 610 n n C24 H241 PTY sing 611 n n C24 H242 PTY sing 612 n n C25 C26 PTY sing 613 n n C25 H251 PTY sing 614 n n C25 H252 PTY sing 615 n n C26 C27 PTY sing 616 n n C26 H261 PTY sing 617 n n C26 H262 PTY sing 618 n n C27 C28 PTY sing 619 n n C27 H271 PTY sing 620 n n C27 H272 PTY sing 621 n n C28 C29 PTY sing 622 n n C28 H281 PTY sing 623 n n C28 H282 PTY sing 624 n n C29 H291 PTY sing 625 n n C29 H292 PTY sing 626 n n C29 H293 PTY sing 627 n n C30 C31 PTY sing 628 n n C30 O30 PTY doub 629 n n C31 C32 PTY sing 630 n n C31 H311 PTY sing 631 n n C31 H312 PTY sing 632 n n C32 C33 PTY sing 633 n n C32 H321 PTY sing 634 n n C32 H322 PTY sing 635 n n C33 C34 PTY sing 636 n n C33 H331 PTY sing 637 n n C33 H332 PTY sing 638 n n C34 C35 PTY sing 639 n n C34 H341 PTY sing 640 n n C34 H342 PTY sing 641 n n C35 C36 PTY sing 642 n n C35 H351 PTY sing 643 n n C35 H352 PTY sing 644 n n C36 C37 PTY sing 645 n n C36 H361 PTY sing 646 n n C36 H362 PTY sing 647 n n C37 C38 PTY sing 648 n n C37 H371 PTY sing 649 n n C37 H372 PTY sing 650 n n C38 C39 PTY sing 651 n n C38 H381 PTY sing 652 n n C38 H382 PTY sing 653 n n C39 C40 PTY sing 654 n n C39 H391 PTY sing 655 n n C39 H392 PTY sing 656 n n C40 C41 PTY sing 657 n n C40 H401 PTY sing 658 n n C40 H402 PTY sing 659 n n C41 C42 PTY sing 660 n n C41 H411 PTY sing 661 n n C41 H412 PTY sing 662 n n C42 C43 PTY sing 663 n n C42 H421 PTY sing 664 n n C42 H422 PTY sing 665 n n C43 C44 PTY sing 666 n n C43 H431 PTY sing 667 n n C43 H432 PTY sing 668 n n C44 H441 PTY sing 669 n n C44 H442 PTY sing 670 n n C44 H443 PTY sing 671 n n P1 O11 PTY sing 672 n n P1 O12 PTY sing 673 n n P1 O13 PTY doub 674 n n P1 O14 PTY sing 675 n n O12 H12O PTY sing 676 n n N1 HN11 PTY sing 677 n n N1 HN12 PTY sing 678 n n # _atom_sites.entry_id 7MJO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 K A 1 501 1 K K . J 4 K A 1 502 3001 K K . K 5 ATP A 1 503 401 ATP ATP . L 6 PTY A 1 504 101 PTY PTY . M 6 PTY A 1 505 201 PTY PTY . N 6 PTY A 1 506 410 PTY PTY . O 6 PTY A 1 507 501 PTY PTY . P 5 ATP B 1 501 402 ATP ATP . Q 5 ATP B 1 502 403 ATP ATP . R 7 POV B 1 503 601 POV POV . S 5 ATP C 1 501 404 ATP ATP . T 6 PTY C 1 502 301 PTY PTY . U 6 PTY C 1 503 420 PTY PTY . V 7 POV C 1 504 701 POV POV . W 7 POV D 1 801 801 POV POV . X 6 PTY D 1 802 901 PTY PTY . Y 5 ATP E 1 1601 405 ATP ATP . Z 8 GBM E 1 1602 2101 GBM GBM . AA 6 PTY E 1 1603 710 PTY PTY . BA 6 PTY E 1 1604 1611 PTY PTY . CA 6 PTY E 1 1605 2701 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . M 6 171.711 214.994 221.257 1 157.44 0 C1 PTY 505 A 1 HETATM 2 C C2 PTY . . . M 6 174.219 212.489 214.066 1 157.44 0 C2 PTY 505 A 1 HETATM 3 C C3 PTY . . . M 6 175.269 212.87 215.108 1 157.44 0 C3 PTY 505 A 1 HETATM 4 O O4 PTY . . . M 6 172.86 215.785 221.337 1 157.44 0 O4 PTY 505 A 1 HETATM 5 C C5 PTY . . . M 6 172.253 214.54 218.862 1 157.44 0 C5 PTY 505 A 1 HETATM 6 C C6 PTY . . . M 6 171.943 213.905 220.214 1 157.44 0 C6 PTY 505 A 1 HETATM 7 O O7 PTY . . . M 6 170.787 213.13 220.104 1 157.44 0 O7 PTY 505 A 1 HETATM 8 C C8 PTY . . . M 6 170.88 212.107 219.157 1 157.44 0 C8 PTY 505 A 1 HETATM 9 O O10 PTY . . . M 6 171.792 211.353 219.187 1 157.44 0 O10 PTY 505 A 1 HETATM 10 C C11 PTY . . . M 6 169.795 211.96 218.093 1 157.44 0 C11 PTY 505 A 1 HETATM 11 C C12 PTY . . . M 6 168.896 213.192 218.017 1 157.44 0 C12 PTY 505 A 1 HETATM 12 C C13 PTY . . . M 6 167.688 213.098 218.947 1 157.44 0 C13 PTY 505 A 1 HETATM 13 C C14 PTY . . . M 6 166.404 212.757 218.194 1 157.44 0 C14 PTY 505 A 1 HETATM 14 C C15 PTY . . . M 6 166.294 211.274 217.844 1 157.44 0 C15 PTY 505 A 1 HETATM 15 C C16 PTY . . . M 6 166.588 210.374 219.044 1 157.44 0 C16 PTY 505 A 1 HETATM 16 C C17 PTY . . . M 6 166.18 208.923 218.801 1 157.44 0 C17 PTY 505 A 1 HETATM 17 C C18 PTY . . . M 6 166.497 208.027 219.997 1 157.44 0 C18 PTY 505 A 1 HETATM 18 C C19 PTY . . . M 6 167.996 207.926 220.259 1 157.44 0 C19 PTY 505 A 1 HETATM 19 C C20 PTY . . . M 6 168.302 207.229 221.581 1 157.44 0 C20 PTY 505 A 1 HETATM 20 C C30 PTY . . . M 6 173.565 215.652 222.538 1 157.44 0 C30 PTY 505 A 1 HETATM 21 C C31 PTY . . . M 6 174.351 216.835 223.093 1 157.44 0 C31 PTY 505 A 1 HETATM 22 O O30 PTY . . . M 6 173.551 214.623 223.123 1 157.44 0 O30 PTY 505 A 1 HETATM 23 C C32 PTY . . . M 6 174.632 216.695 224.586 1 157.44 0 C32 PTY 505 A 1 HETATM 24 C C33 PTY . . . M 6 173.366 216.828 225.427 1 157.44 0 C33 PTY 505 A 1 HETATM 25 C C34 PTY . . . M 6 173.43 215.976 226.691 1 157.44 0 C34 PTY 505 A 1 HETATM 26 C C35 PTY . . . M 6 173.568 214.489 226.377 1 157.44 0 C35 PTY 505 A 1 HETATM 27 P P1 PTY . . . M 6 173.529 213.166 217.038 1 157.44 0 P1 PTY 505 A 1 HETATM 28 O O11 PTY . . . M 6 174.689 213.75 216.027 1 157.44 0 O11 PTY 505 A 1 HETATM 29 O O12 PTY . . . M 6 172.181 213.234 216.365 1 157.44 -1 O12 PTY 505 A 1 HETATM 30 O O13 PTY . . . M 6 173.853 211.731 217.372 1 157.44 0 O13 PTY 505 A 1 HETATM 31 O O14 PTY . . . M 6 173.489 214.055 218.422 1 157.44 0 O14 PTY 505 A 1 HETATM 32 N N1 PTY . . . M 6 173.623 211.205 214.383 1 157.44 0 N1 PTY 505 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 100 _model_server_stats.query_time_ms 1298 _model_server_stats.encode_time_ms 46 _model_server_stats.element_count 32 #