data_7MJP # _model_server_result.job_id 4TDHNrSYUq3EEwxcUumjyw _model_server_result.datetime_utc '2024-12-22 05:56:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 7MJP # _exptl.entry_id 7MJP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 N 1 NAG N 601 NAG 3 n F NAG 2 N 2 NAG N 602 NAG # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id F _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id NAG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id N _struct_conn.ptnr1_auth_comp_id NAG _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id N _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.443 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7MJP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 501 401 ATP ATP . H 4 ATP B 1 501 402 ATP ATP . I 4 ATP B 1 502 403 ATP ATP . J 4 ATP D 1 501 404 ATP ATP . K 4 ATP E 1 1601 405 ATP ATP . L 5 GBM E 1 1602 2101 GBM GBM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 4 211.918 231.511 189.495 1 0 0 PG ATP 502 B 1 HETATM 2 O O1G ATP . . . I 4 212.417 231.783 190.892 1 0 0 O1G ATP 502 B 1 HETATM 3 O O2G ATP . . . I 4 211.813 232.743 188.629 1 0 -1 O2G ATP 502 B 1 HETATM 4 O O3G ATP . . . I 4 212.59 230.339 188.827 1 0 0 O3G ATP 502 B 1 HETATM 5 P PB ATP . . . I 4 209.458 231.67 190.82 1 0 0 PB ATP 502 B 1 HETATM 6 O O1B ATP . . . I 4 209.187 233.102 190.436 1 0 -1 O1B ATP 502 B 1 HETATM 7 O O2B ATP . . . I 4 210.057 231.348 192.166 1 0 0 O2B ATP 502 B 1 HETATM 8 O O3B ATP . . . I 4 210.397 231.012 189.691 1 0 0 O3B ATP 502 B 1 HETATM 9 P PA ATP . . . I 4 206.938 231.02 191.8 1 0 0 PA ATP 502 B 1 HETATM 10 O O1A ATP . . . I 4 205.994 232.132 191.425 1 0 -1 O1A ATP 502 B 1 HETATM 11 O O2A ATP . . . I 4 207.595 230.996 193.151 1 0 0 O2A ATP 502 B 1 HETATM 12 O O3A ATP . . . I 4 208.079 230.86 190.682 1 0 0 O3A ATP 502 B 1 HETATM 13 O O5' ATP . . . I 4 206.2 229.615 191.626 1 0 0 O5' ATP 502 B 1 HETATM 14 C C5' ATP . . . I 4 207.007 228.45 191.629 1 0 0 C5' ATP 502 B 1 HETATM 15 C C4' ATP . . . I 4 206.214 227.325 192.253 1 0 0 C4' ATP 502 B 1 HETATM 16 O O4' ATP . . . I 4 206.957 226.131 192.093 1 0 0 O4' ATP 502 B 1 HETATM 17 C C3' ATP . . . I 4 206.054 227.571 193.732 1 0 0 C3' ATP 502 B 1 HETATM 18 O O3' ATP . . . I 4 204.725 227.239 194.125 1 0 0 O3' ATP 502 B 1 HETATM 19 C C2' ATP . . . I 4 206.989 226.612 194.411 1 0 0 C2' ATP 502 B 1 HETATM 20 O O2' ATP . . . I 4 206.253 225.883 195.388 1 0 0 O2' ATP 502 B 1 HETATM 21 C C1' ATP . . . I 4 207.435 225.653 193.339 1 0 0 C1' ATP 502 B 1 HETATM 22 N N9 ATP . . . I 4 208.896 225.723 193.246 1 0 0 N9 ATP 502 B 1 HETATM 23 C C8 ATP . . . I 4 209.554 226.201 192.183 1 0 0 C8 ATP 502 B 1 HETATM 24 N N7 ATP . . . I 4 210.891 226.137 192.363 1 0 0 N7 ATP 502 B 1 HETATM 25 C C5 ATP . . . I 4 211.087 225.602 193.57 1 0 0 C5 ATP 502 B 1 HETATM 26 C C6 ATP . . . I 4 212.267 225.269 194.37 1 0 0 C6 ATP 502 B 1 HETATM 27 N N6 ATP . . . I 4 213.496 225.508 193.867 1 0 0 N6 ATP 502 B 1 HETATM 28 N N1 ATP . . . I 4 212.069 224.725 195.587 1 0 0 N1 ATP 502 B 1 HETATM 29 C C2 ATP . . . I 4 210.831 224.494 196.064 1 0 0 C2 ATP 502 B 1 HETATM 30 N N3 ATP . . . I 4 209.707 224.776 195.385 1 0 0 N3 ATP 502 B 1 HETATM 31 C C4 ATP . . . I 4 209.775 225.324 194.154 1 0 0 C4 ATP 502 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #