data_7MJS
#
_model_server_result.job_id            nw_tNs17ARJgDcsYY7plMw 
_model_server_result.datetime_utc      '2024-11-21 14:05:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mjs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7MJS 
#
_exptl.entry_id    7MJS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              518.644 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 H CYS 25 1_555 A SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 24 L CYS 24 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 C SG CYS 207 X CYS 207 1_555 C SG CYS 460 X CYS 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 C ND2 ASN 218 X ASN 218 1_555 F C1 NAG . X NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale2 C ND2 ASN 227 X ASN 227 1_555 E C1 NAG . X NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C26 H49 N O7 P 1' 
_chem_comp.formula_weight    518.644 
_chem_comp.id                ZGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LysoPC(18:3(9Z,12Z,15Z)) 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 ZGS sing 404 n n 
C03 C02 ZGS sing 405 n n 
C03 C04 ZGS doub 406 z n 
C04 C05 ZGS sing 407 n n 
C05 C06 ZGS sing 408 n n 
C06 C07 ZGS doub 409 z n 
C08 C07 ZGS sing 410 n n 
C08 C09 ZGS sing 411 n n 
C09 C10 ZGS doub 412 z n 
C10 C11 ZGS sing 413 n n 
C11 C12 ZGS sing 414 n n 
C12 C13 ZGS sing 415 n n 
C13 C14 ZGS sing 416 n n 
C14 C15 ZGS sing 417 n n 
O19 C18 ZGS doub 418 n n 
C16 C17 ZGS sing 419 n n 
C16 C15 ZGS sing 420 n n 
C17 C18 ZGS sing 421 n n 
C18 O20 ZGS sing 422 n n 
O20 C21 ZGS sing 423 n n 
O35 C22 ZGS sing 424 n n 
C21 C22 ZGS sing 425 n n 
O26 P25 ZGS doub 426 n n 
C22 C23 ZGS sing 427 n n 
O27 P25 ZGS sing 428 n n 
P25 O24 ZGS sing 429 n n 
P25 O28 ZGS sing 430 n n 
C23 O24 ZGS sing 431 n n 
O28 C29 ZGS sing 432 n n 
C29 C30 ZGS sing 433 n n 
C30 N31 ZGS sing 434 n n 
C32 N31 ZGS sing 435 n n 
N31 C33 ZGS sing 436 n n 
N31 C34 ZGS sing 437 n n 
C01 H1 ZGS sing 438 n n 
C01 H2 ZGS sing 439 n n 
C01 H3 ZGS sing 440 n n 
C02 H4 ZGS sing 441 n n 
C02 H5 ZGS sing 442 n n 
C03 H6 ZGS sing 443 n n 
C04 H7 ZGS sing 444 n n 
C05 H8 ZGS sing 445 n n 
C05 H9 ZGS sing 446 n n 
C06 H10 ZGS sing 447 n n 
C07 H11 ZGS sing 448 n n 
C08 H12 ZGS sing 449 n n 
C08 H13 ZGS sing 450 n n 
C09 H14 ZGS sing 451 n n 
C10 H15 ZGS sing 452 n n 
C11 H16 ZGS sing 453 n n 
C11 H17 ZGS sing 454 n n 
C12 H18 ZGS sing 455 n n 
C12 H19 ZGS sing 456 n n 
C13 H20 ZGS sing 457 n n 
C13 H21 ZGS sing 458 n n 
C14 H22 ZGS sing 459 n n 
C14 H23 ZGS sing 460 n n 
C15 H24 ZGS sing 461 n n 
C15 H25 ZGS sing 462 n n 
C16 H26 ZGS sing 463 n n 
C16 H27 ZGS sing 464 n n 
C17 H28 ZGS sing 465 n n 
C17 H29 ZGS sing 466 n n 
C21 H30 ZGS sing 467 n n 
C21 H31 ZGS sing 468 n n 
C22 H32 ZGS sing 469 n n 
C23 H33 ZGS sing 470 n n 
C23 H34 ZGS sing 471 n n 
C29 H35 ZGS sing 472 n n 
C29 H36 ZGS sing 473 n n 
C30 H37 ZGS sing 474 n n 
C30 H38 ZGS sing 475 n n 
C32 H39 ZGS sing 476 n n 
C32 H40 ZGS sing 477 n n 
C32 H41 ZGS sing 478 n n 
C33 H42 ZGS sing 479 n n 
C33 H43 ZGS sing 480 n n 
C33 H44 ZGS sing 481 n n 
C34 H45 ZGS sing 482 n n 
C34 H46 ZGS sing 483 n n 
C34 H47 ZGS sing 484 n n 
O27 H48 ZGS sing 485 n n 
O35 H49 ZGS sing 486 n n 
#
_atom_sites.entry_id                     7MJS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZGS X 1 601 601 ZGS LPC . 
E 5 NAG X 1 602 603 NAG NAG . 
F 5 NAG X 1 603 604 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 ZGS . . . D 4 137.666 151.068 180.437 1 72.46 ? C01 ZGS 601 X 1 
HETATM 2 C C02 ZGS . . . D 4 138.527 151.423 181.664 1 72.46 ? C02 ZGS 601 X 1 
HETATM 3 C C03 ZGS . . . D 4 139.896 150.804 181.498 1 72.46 ? C03 ZGS 601 X 1 
HETATM 4 C C04 ZGS . . . D 4 140.777 150.752 182.512 1 72.46 ? C04 ZGS 601 X 1 
HETATM 5 C C05 ZGS . . . D 4 140.463 151.323 183.919 1 72.46 ? C05 ZGS 601 X 1 
HETATM 6 C C06 ZGS . . . D 4 140.534 150.161 184.95 1 72.46 ? C06 ZGS 601 X 1 
HETATM 7 C C07 ZGS . . . D 4 141.625 149.985 185.745 1 72.46 ? C07 ZGS 601 X 1 
HETATM 8 C C08 ZGS . . . D 4 142.845 150.928 185.662 1 72.46 ? C08 ZGS 601 X 1 
HETATM 9 C C09 ZGS . . . D 4 142.651 152.134 186.613 1 72.46 ? C09 ZGS 601 X 1 
HETATM 10 C C10 ZGS . . . D 4 143.017 152.054 187.917 1 72.46 ? C10 ZGS 601 X 1 
HETATM 11 C C11 ZGS . . . D 4 143.636 150.754 188.496 1 72.46 ? C11 ZGS 601 X 1 
HETATM 12 C C12 ZGS . . . D 4 144.262 151.063 189.902 1 72.46 ? C12 ZGS 601 X 1 
HETATM 13 C C13 ZGS . . . D 4 143.499 150.343 191.042 1 72.46 ? C13 ZGS 601 X 1 
HETATM 14 C C14 ZGS . . . D 4 144.207 150.487 192.413 1 72.46 ? C14 ZGS 601 X 1 
HETATM 15 C C15 ZGS . . . D 4 143.206 150.799 193.569 1 72.46 ? C15 ZGS 601 X 1 
HETATM 16 C C16 ZGS . . . D 4 142.081 151.772 193.137 1 72.46 ? C16 ZGS 601 X 1 
HETATM 17 C C17 ZGS . . . D 4 142.512 153.251 193.275 1 72.46 ? C17 ZGS 601 X 1 
HETATM 18 C C18 ZGS . . . D 4 141.334 154.199 193.604 1 72.46 ? C18 ZGS 601 X 1 
HETATM 19 C C21 ZGS . . . D 4 140.401 155.684 195.191 1 72.46 ? C21 ZGS 601 X 1 
HETATM 20 C C22 ZGS . . . D 4 141.434 156.481 196.001 1 72.46 ? C22 ZGS 601 X 1 
HETATM 21 C C23 ZGS . . . D 4 140.744 157.649 196.733 1 72.46 ? C23 ZGS 601 X 1 
HETATM 22 C C29 ZGS . . . D 4 140.632 160.652 199.215 1 72.46 ? C29 ZGS 601 X 1 
HETATM 23 C C30 ZGS . . . D 4 140.543 161.797 200.247 1 72.46 ? C30 ZGS 601 X 1 
HETATM 24 C C32 ZGS . . . D 4 138.412 161.02 200.983 1 72.46 ? C32 ZGS 601 X 1 
HETATM 25 C C33 ZGS . . . D 4 140.36 160.261 202.085 1 72.46 ? C33 ZGS 601 X 1 
HETATM 26 C C34 ZGS . . . D 4 139.637 162.503 202.349 1 72.46 ? C34 ZGS 601 X 1 
HETATM 27 N N31 ZGS . . . D 4 139.735 161.392 201.416 1 72.46 ? N31 ZGS 601 X 1 
HETATM 28 O O19 ZGS . . . D 4 140.755 154.762 192.737 1 72.46 ? O19 ZGS 601 X 1 
HETATM 29 O O20 ZGS . . . D 4 140.953 154.401 194.953 1 72.46 ? O20 ZGS 601 X 1 
HETATM 30 O O24 ZGS . . . D 4 141.674 158.723 196.814 1 72.46 ? O24 ZGS 601 X 1 
HETATM 31 O O26 ZGS . . . D 4 141.841 160.967 195.493 1 72.46 ? O26 ZGS 601 X 1 
HETATM 32 O O27 ZGS . . . D 4 139.623 160.235 196.299 1 72.46 ? O27 ZGS 601 X 1 
HETATM 33 O O28 ZGS . . . D 4 141.324 161.121 198.059 1 72.46 ? O28 ZGS 601 X 1 
HETATM 34 O O35 ZGS . . . D 4 142.39 156.989 195.128 1 72.46 ? O35 ZGS 601 X 1 
HETATM 35 P P25 ZGS . . . D 4 141.102 160.282 196.627 1 72.46 ? P25 ZGS 601 X 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#