data_7MJV # _model_server_result.job_id kvu1XEHvnsTYKkuzAJVT2Q _model_server_result.datetime_utc '2024-12-02 10:29:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7MJV # _exptl.entry_id 7MJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJV _cell.length_a 54.155 _cell.length_b 81.442 _cell.length_c 109.751 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' A 10 E A 36 1_555 B P ZJS 11 E ZJS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 B O3' ZJS 11 E ZJS 37 1_555 B P A 12 E A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? metalc ? metalc1 A SG CYS 27 A CYS 27 1_555 C FE3 F3S . A F3S 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A SG CYS 63 A CYS 63 1_555 C FE4 F3S . A F3S 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C FE1 F3S . A F3S 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 A SG CYS 171 A CYS 171 1_555 D FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 A SG CYS 175 A CYS 175 1_555 D FE1 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 A SG CYS 178 A CYS 178 1_555 D FE3 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc7 A O ILE 266 A ILE 266 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 A O MET 269 A MET 269 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc9 A O VAL 272 A VAL 272 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc10 D FE2 SF4 . A SF4 502 1_555 E OXT SAM . A SAM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc11 F MG MG . A MG 504 1_555 H O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc12 G MG MG . A MG 505 1_555 H O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? hydrog 'G-C PAIR' hydrog1 B N2 G 3 E G 29 1_555 B N3 C 15 E C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog2 B O6 G 4 E G 30 1_555 B N4 C 14 E C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 A 5 E A 31 1_555 B N3 U 13 E U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 A 5 E A 31 1_555 B O4 U 13 E U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog5 B N3 C 6 E C 32 1_555 B N6 A 12 E A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 465 n n FE1 S3 SF4 sing 466 n n FE1 S4 SF4 sing 467 n n FE2 S1 SF4 sing 468 n n FE2 S3 SF4 sing 469 n n FE2 S4 SF4 sing 470 n n FE3 S1 SF4 sing 471 n n FE3 S2 SF4 sing 472 n n FE3 S4 SF4 sing 473 n n FE4 S1 SF4 sing 474 n n FE4 S2 SF4 sing 475 n n FE4 S3 SF4 sing 476 n n # _atom_sites.entry_id 7MJV _atom_sites.fract_transf_matrix[1][1] 0.018466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 F3S A 1 501 501 F3S F3S . D 4 SF4 A 1 502 2 SF4 SF4 . E 5 SAM A 1 503 1 SAM SAM . F 6 MG A 1 504 1 MG MG . G 6 MG A 1 505 3 MG MG . H 7 HOH A 1 601 15 HOH HOH . H 7 HOH A 2 602 14 HOH HOH . H 7 HOH A 3 603 19 HOH HOH . H 7 HOH A 4 604 10 HOH HOH . H 7 HOH A 5 605 37 HOH HOH . H 7 HOH A 6 606 1 HOH HOH . H 7 HOH A 7 607 11 HOH HOH . H 7 HOH A 8 608 46 HOH HOH . H 7 HOH A 9 609 23 HOH HOH . H 7 HOH A 10 610 40 HOH HOH . H 7 HOH A 11 611 8 HOH HOH . H 7 HOH A 12 612 5 HOH HOH . H 7 HOH A 13 613 42 HOH HOH . H 7 HOH A 14 614 13 HOH HOH . H 7 HOH A 15 615 41 HOH HOH . H 7 HOH A 16 616 6 HOH HOH . H 7 HOH A 17 617 43 HOH HOH . H 7 HOH A 18 618 2 HOH HOH . H 7 HOH A 19 619 21 HOH HOH . H 7 HOH A 20 620 36 HOH HOH . H 7 HOH A 21 621 4 HOH HOH . H 7 HOH A 22 622 9 HOH HOH . H 7 HOH A 23 623 27 HOH HOH . H 7 HOH A 24 624 20 HOH HOH . H 7 HOH A 25 625 18 HOH HOH . H 7 HOH A 26 626 3 HOH HOH . H 7 HOH A 27 627 31 HOH HOH . H 7 HOH A 28 628 17 HOH HOH . H 7 HOH A 29 629 30 HOH HOH . H 7 HOH A 30 630 38 HOH HOH . H 7 HOH A 31 631 16 HOH HOH . H 7 HOH A 32 632 7 HOH HOH . H 7 HOH A 33 633 12 HOH HOH . H 7 HOH A 34 634 28 HOH HOH . H 7 HOH A 35 635 32 HOH HOH . H 7 HOH A 36 636 24 HOH HOH . I 7 HOH E 1 101 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 4 19.021 -8.883 125.253 1 35.11 ? FE1 SF4 502 A 1 HETATM 2 FE FE2 SF4 . . . D 4 20.528 -6.71 124.526 1 40.21 ? FE2 SF4 502 A 1 HETATM 3 FE FE3 SF4 . . . D 4 19.414 -8.351 122.635 1 38.05 ? FE3 SF4 502 A 1 HETATM 4 FE FE4 SF4 . . . D 4 21.497 -9.245 124.178 1 35.84 ? FE4 SF4 502 A 1 HETATM 5 S S1 SF4 . . . D 4 21.536 -7.528 122.667 1 35.88 ? S1 SF4 502 A 1 HETATM 6 S S2 SF4 . . . D 4 19.584 -10.387 123.642 1 36.96 ? S2 SF4 502 A 1 HETATM 7 S S3 SF4 . . . D 4 21.035 -8.247 126.143 1 34.27 ? S3 SF4 502 A 1 HETATM 8 S S4 SF4 . . . D 4 18.302 -7.038 124.13 1 36.92 ? S4 SF4 502 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #