data_7MJV # _model_server_result.job_id DJe-Exdd5KiMaD4RgXsMHw _model_server_result.datetime_utc '2024-11-02 03:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 7MJV # _exptl.entry_id 7MJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MJV _cell.length_a 54.155 _cell.length_b 81.442 _cell.length_c 109.751 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' A 10 E A 36 1_555 B P ZJS 11 E ZJS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 B O3' ZJS 11 E ZJS 37 1_555 B P A 12 E A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? metalc ? metalc1 A SG CYS 27 A CYS 27 1_555 C FE3 F3S . A F3S 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A SG CYS 63 A CYS 63 1_555 C FE4 F3S . A F3S 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C FE1 F3S . A F3S 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 A SG CYS 171 A CYS 171 1_555 D FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 A SG CYS 175 A CYS 175 1_555 D FE1 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 A SG CYS 178 A CYS 178 1_555 D FE3 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc7 A O ILE 266 A ILE 266 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 A O MET 269 A MET 269 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc9 A O VAL 272 A VAL 272 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc10 D FE2 SF4 . A SF4 502 1_555 E OXT SAM . A SAM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc11 F MG MG . A MG 504 1_555 H O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc12 G MG MG . A MG 505 1_555 H O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? hydrog 'G-C PAIR' hydrog1 B N2 G 3 E G 29 1_555 B N3 C 15 E C 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog2 B O6 G 4 E G 30 1_555 B N4 C 14 E C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 A 5 E A 31 1_555 B N3 U 13 E U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 A 5 E A 31 1_555 B O4 U 13 E U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog5 B N3 C 6 E C 32 1_555 B N6 A 12 E A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 401 n n N HN1 SAM sing 402 n n N HN2 SAM sing 403 n n CA C SAM sing 404 n n CA CB SAM sing 405 n n CA HA SAM sing 406 n n C O SAM doub 407 n n C OXT SAM sing 408 n n CB CG SAM sing 409 n n CB HB1 SAM sing 410 n n CB HB2 SAM sing 411 n n CG SD SAM sing 412 n n CG HG1 SAM sing 413 n n CG HG2 SAM sing 414 n n SD CE SAM sing 415 n n SD C5' SAM sing 416 n n CE HE1 SAM sing 417 n n CE HE2 SAM sing 418 n n CE HE3 SAM sing 419 n n C5' C4' SAM sing 420 n n C5' "H5'1" SAM sing 421 n n C5' "H5'2" SAM sing 422 n n C4' O4' SAM sing 423 n n C4' C3' SAM sing 424 n n C4' H4' SAM sing 425 n n O4' C1' SAM sing 426 n n C3' O3' SAM sing 427 n n C3' C2' SAM sing 428 n n C3' H3' SAM sing 429 n n O3' HO3' SAM sing 430 n n C2' O2' SAM sing 431 n n C2' C1' SAM sing 432 n n C2' H2' SAM sing 433 n n O2' HO2' SAM sing 434 n n C1' N9 SAM sing 435 n n C1' H1' SAM sing 436 n n N9 C8 SAM sing 437 n y N9 C4 SAM sing 438 n y C8 N7 SAM doub 439 n y C8 H8 SAM sing 440 n n N7 C5 SAM sing 441 n y C5 C6 SAM sing 442 n y C5 C4 SAM doub 443 n y C6 N6 SAM sing 444 n n C6 N1 SAM doub 445 n y N6 HN61 SAM sing 446 n n N6 HN62 SAM sing 447 n n N1 C2 SAM sing 448 n y C2 N3 SAM doub 449 n y C2 H2 SAM sing 450 n n N3 C4 SAM sing 451 n y # _atom_sites.entry_id 7MJV _atom_sites.fract_transf_matrix[1][1] 0.018466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 F3S A 1 501 501 F3S F3S . D 4 SF4 A 1 502 2 SF4 SF4 . E 5 SAM A 1 503 1 SAM SAM . F 6 MG A 1 504 1 MG MG . G 6 MG A 1 505 3 MG MG . H 7 HOH A 1 601 15 HOH HOH . H 7 HOH A 2 602 14 HOH HOH . H 7 HOH A 3 603 19 HOH HOH . H 7 HOH A 4 604 10 HOH HOH . H 7 HOH A 5 605 37 HOH HOH . H 7 HOH A 6 606 1 HOH HOH . H 7 HOH A 7 607 11 HOH HOH . H 7 HOH A 8 608 46 HOH HOH . H 7 HOH A 9 609 23 HOH HOH . H 7 HOH A 10 610 40 HOH HOH . H 7 HOH A 11 611 8 HOH HOH . H 7 HOH A 12 612 5 HOH HOH . H 7 HOH A 13 613 42 HOH HOH . H 7 HOH A 14 614 13 HOH HOH . H 7 HOH A 15 615 41 HOH HOH . H 7 HOH A 16 616 6 HOH HOH . H 7 HOH A 17 617 43 HOH HOH . H 7 HOH A 18 618 2 HOH HOH . H 7 HOH A 19 619 21 HOH HOH . H 7 HOH A 20 620 36 HOH HOH . H 7 HOH A 21 621 4 HOH HOH . H 7 HOH A 22 622 9 HOH HOH . H 7 HOH A 23 623 27 HOH HOH . H 7 HOH A 24 624 20 HOH HOH . H 7 HOH A 25 625 18 HOH HOH . H 7 HOH A 26 626 3 HOH HOH . H 7 HOH A 27 627 31 HOH HOH . H 7 HOH A 28 628 17 HOH HOH . H 7 HOH A 29 629 30 HOH HOH . H 7 HOH A 30 630 38 HOH HOH . H 7 HOH A 31 631 16 HOH HOH . H 7 HOH A 32 632 7 HOH HOH . H 7 HOH A 33 633 12 HOH HOH . H 7 HOH A 34 634 28 HOH HOH . H 7 HOH A 35 635 32 HOH HOH . H 7 HOH A 36 636 24 HOH HOH . I 7 HOH E 1 101 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . E 5 22.061 -4.054 124.697 1 45.91 ? N SAM 503 A 1 HETATM 2 C CA SAM . . . E 5 20.737 -3.5 124.955 1 46.13 ? CA SAM 503 A 1 HETATM 3 C C SAM . . . E 5 20.103 -4.026 126.24 1 47.4 ? C SAM 503 A 1 HETATM 4 O O SAM . . . E 5 19.878 -3.297 127.206 1 47.87 ? O SAM 503 A 1 HETATM 5 O OXT SAM . . . E 5 19.806 -5.213 126.346 1 44.87 ? OXT SAM 503 A 1 HETATM 6 C CB SAM . . . E 5 19.834 -3.807 123.776 1 48.29 ? CB SAM 503 A 1 HETATM 7 C CG SAM . . . E 5 20.49 -3.756 122.406 1 52.95 ? CG SAM 503 A 1 HETATM 8 S SD SAM . . . E 5 19.239 -3.465 121.133 1 44.09 ? SD SAM 503 A 1 HETATM 9 C CE SAM . . . E 5 20.343 -3.105 119.749 1 61.64 ? CE SAM 503 A 1 HETATM 10 C C5' SAM . . . E 5 18.743 -1.799 121.619 1 45.68 ? C5' SAM 503 A 1 HETATM 11 C C4' SAM . . . E 5 17.271 -1.604 121.949 1 37.4 ? C4' SAM 503 A 1 HETATM 12 O O4' SAM . . . E 5 16.444 -1.926 120.85 1 37.68 ? O4' SAM 503 A 1 HETATM 13 C C3' SAM . . . E 5 16.822 -2.524 123.069 1 38.81 ? C3' SAM 503 A 1 HETATM 14 O O3' SAM . . . E 5 17.067 -1.949 124.329 1 38.12 ? O3' SAM 503 A 1 HETATM 15 C C2' SAM . . . E 5 15.351 -2.714 122.808 1 36.23 ? C2' SAM 503 A 1 HETATM 16 O O2' SAM . . . E 5 14.625 -1.744 123.514 1 39.72 ? O2' SAM 503 A 1 HETATM 17 C C1' SAM . . . E 5 15.209 -2.406 121.335 1 42.45 ? C1' SAM 503 A 1 HETATM 18 N N9 SAM . . . E 5 14.875 -3.641 120.63 1 47.22 ? N9 SAM 503 A 1 HETATM 19 C C8 SAM . . . E 5 15.613 -4.791 120.592 1 44.72 ? C8 SAM 503 A 1 HETATM 20 N N7 SAM . . . E 5 14.931 -5.676 119.825 1 42.38 ? N7 SAM 503 A 1 HETATM 21 C C5 SAM . . . E 5 13.779 -5.1 119.385 1 40.47 ? C5 SAM 503 A 1 HETATM 22 C C6 SAM . . . E 5 12.713 -5.519 118.586 1 41.46 ? C6 SAM 503 A 1 HETATM 23 N N6 SAM . . . E 5 12.672 -6.738 118.064 1 41.45 ? N6 SAM 503 A 1 HETATM 24 N N1 SAM . . . E 5 11.665 -4.662 118.32 1 43.57 ? N1 SAM 503 A 1 HETATM 25 C C2 SAM . . . E 5 11.665 -3.389 118.847 1 46.03 ? C2 SAM 503 A 1 HETATM 26 N N3 SAM . . . E 5 12.716 -2.969 119.634 1 41.38 ? N3 SAM 503 A 1 HETATM 27 C C4 SAM . . . E 5 13.741 -3.813 119.894 1 38.99 ? C4 SAM 503 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #