data_7MK8 # _model_server_result.job_id oS4IfnzpIzyn-uuf4a6b6Q _model_server_result.datetime_utc '2024-11-18 17:38:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":603}' # _entry.id 7MK8 # _exptl.entry_id 7MK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MK8 _cell.length_a 72.29 _cell.length_b 205.12 _cell.length_c 156.55 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,G,H,I,K 1 1 A,C,D,E,F,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_747 -x+5/2,y-1/2,-z+5/2 -1 0 0 0 1 0 0 0 -1 180.725 -102.56 391.375 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 J O HOH . A HOH 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 G FE HEM . B HEM 601 1_555 K O HOH . B HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTV _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTV sing 83 n n S1 H1 DTV sing 84 n n C1 C2 DTV sing 85 n n C1 H1C1 DTV sing 86 n n C1 H1C2 DTV sing 87 n n C2 O2 DTV sing 88 n n C2 C3 DTV sing 89 n n C2 H2 DTV sing 90 n n O2 HA DTV sing 91 n n C3 O3 DTV sing 92 n n C3 C4 DTV sing 93 n n C3 H3 DTV sing 94 n n O3 HB DTV sing 95 n n C4 S4 DTV sing 96 n n C4 H4C1 DTV sing 97 n n C4 H4C2 DTV sing 98 n n S4 H4 DTV sing 99 n n # _atom_sites.entry_id 7MK8 _atom_sites.fract_transf_matrix[1][1] 0.013833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 SO4 A 1 602 602 SO4 SO4 . E 4 DTV A 1 603 700 DTV DTT . F 3 SO4 A 1 604 600 SO4 SO4 . G 2 HEM B 1 601 500 HEM HEM . H 3 SO4 B 1 602 601 SO4 SO4 . I 4 DTV B 1 603 700 DTV DTT . J 5 HOH A 1 701 226 HOH HOH . J 5 HOH A 2 702 127 HOH HOH . J 5 HOH A 3 703 156 HOH HOH . J 5 HOH A 4 704 170 HOH HOH . J 5 HOH A 5 705 73 HOH HOH . J 5 HOH A 6 706 91 HOH HOH . J 5 HOH A 7 707 161 HOH HOH . J 5 HOH A 8 708 172 HOH HOH . J 5 HOH A 9 709 92 HOH HOH . J 5 HOH A 10 710 133 HOH HOH . J 5 HOH A 11 711 6 HOH HOH . J 5 HOH A 12 712 17 HOH HOH . J 5 HOH A 13 713 75 HOH HOH . J 5 HOH A 14 714 224 HOH HOH . J 5 HOH A 15 715 121 HOH HOH . J 5 HOH A 16 716 168 HOH HOH . J 5 HOH A 17 717 111 HOH HOH . J 5 HOH A 18 718 116 HOH HOH . J 5 HOH A 19 719 132 HOH HOH . J 5 HOH A 20 720 38 HOH HOH . J 5 HOH A 21 721 115 HOH HOH . J 5 HOH A 22 722 60 HOH HOH . J 5 HOH A 23 723 185 HOH HOH . J 5 HOH A 24 724 190 HOH HOH . J 5 HOH A 25 725 162 HOH HOH . J 5 HOH A 26 726 112 HOH HOH . J 5 HOH A 27 727 68 HOH HOH . J 5 HOH A 28 728 87 HOH HOH . J 5 HOH A 29 729 205 HOH HOH . J 5 HOH A 30 730 34 HOH HOH . J 5 HOH A 31 731 96 HOH HOH . J 5 HOH A 32 732 180 HOH HOH . J 5 HOH A 33 733 157 HOH HOH . J 5 HOH A 34 734 52 HOH HOH . J 5 HOH A 35 735 134 HOH HOH . J 5 HOH A 36 736 66 HOH HOH . J 5 HOH A 37 737 76 HOH HOH . J 5 HOH A 38 738 139 HOH HOH . J 5 HOH A 39 739 77 HOH HOH . J 5 HOH A 40 740 74 HOH HOH . J 5 HOH A 41 741 118 HOH HOH . J 5 HOH A 42 742 88 HOH HOH . J 5 HOH A 43 743 187 HOH HOH . J 5 HOH A 44 744 44 HOH HOH . J 5 HOH A 45 745 64 HOH HOH . J 5 HOH A 46 746 56 HOH HOH . J 5 HOH A 47 747 42 HOH HOH . J 5 HOH A 48 748 93 HOH HOH . J 5 HOH A 49 749 4 HOH HOH . J 5 HOH A 50 750 219 HOH HOH . J 5 HOH A 51 751 23 HOH HOH . J 5 HOH A 52 752 159 HOH HOH . J 5 HOH A 53 753 138 HOH HOH . J 5 HOH A 54 754 67 HOH HOH . J 5 HOH A 55 755 79 HOH HOH . J 5 HOH A 56 756 166 HOH HOH . J 5 HOH A 57 757 142 HOH HOH . J 5 HOH A 58 758 113 HOH HOH . J 5 HOH A 59 759 11 HOH HOH . J 5 HOH A 60 760 70 HOH HOH . J 5 HOH A 61 761 124 HOH HOH . J 5 HOH A 62 762 39 HOH HOH . J 5 HOH A 63 763 151 HOH HOH . J 5 HOH A 64 764 194 HOH HOH . J 5 HOH A 65 765 97 HOH HOH . J 5 HOH A 66 766 25 HOH HOH . J 5 HOH A 67 767 69 HOH HOH . J 5 HOH A 68 768 22 HOH HOH . J 5 HOH A 69 769 41 HOH HOH . J 5 HOH A 70 770 229 HOH HOH . J 5 HOH A 71 771 141 HOH HOH . J 5 HOH A 72 772 35 HOH HOH . J 5 HOH A 73 773 191 HOH HOH . J 5 HOH A 74 774 155 HOH HOH . J 5 HOH A 75 775 36 HOH HOH . J 5 HOH A 76 776 228 HOH HOH . J 5 HOH A 77 777 137 HOH HOH . J 5 HOH A 78 778 192 HOH HOH . J 5 HOH A 79 779 225 HOH HOH . J 5 HOH A 80 780 94 HOH HOH . J 5 HOH A 81 781 80 HOH HOH . J 5 HOH A 82 782 61 HOH HOH . J 5 HOH A 83 783 223 HOH HOH . J 5 HOH A 84 784 7 HOH HOH . J 5 HOH A 85 785 114 HOH HOH . J 5 HOH A 86 786 153 HOH HOH . J 5 HOH A 87 787 128 HOH HOH . J 5 HOH A 88 788 51 HOH HOH . J 5 HOH A 89 789 149 HOH HOH . J 5 HOH A 90 790 183 HOH HOH . J 5 HOH A 91 791 54 HOH HOH . J 5 HOH A 92 792 227 HOH HOH . J 5 HOH A 93 793 163 HOH HOH . J 5 HOH A 94 794 184 HOH HOH . J 5 HOH A 95 795 81 HOH HOH . J 5 HOH A 96 796 188 HOH HOH . J 5 HOH A 97 797 160 HOH HOH . J 5 HOH A 98 798 169 HOH HOH . J 5 HOH A 99 799 59 HOH HOH . J 5 HOH A 100 800 174 HOH HOH . J 5 HOH A 101 801 147 HOH HOH . J 5 HOH A 102 802 204 HOH HOH . J 5 HOH A 103 803 158 HOH HOH . J 5 HOH A 104 804 82 HOH HOH . J 5 HOH A 105 805 98 HOH HOH . J 5 HOH A 106 806 218 HOH HOH . J 5 HOH A 107 807 57 HOH HOH . J 5 HOH A 108 808 14 HOH HOH . J 5 HOH A 109 809 178 HOH HOH . J 5 HOH A 110 810 196 HOH HOH . J 5 HOH A 111 811 222 HOH HOH . J 5 HOH A 112 812 220 HOH HOH . J 5 HOH A 113 813 221 HOH HOH . J 5 HOH A 114 814 181 HOH HOH . J 5 HOH A 115 815 125 HOH HOH . J 5 HOH A 116 816 230 HOH HOH . J 5 HOH A 117 817 117 HOH HOH . J 5 HOH A 118 818 84 HOH HOH . J 5 HOH A 119 819 154 HOH HOH . K 5 HOH B 1 701 144 HOH HOH . K 5 HOH B 2 702 201 HOH HOH . K 5 HOH B 3 703 175 HOH HOH . K 5 HOH B 4 704 197 HOH HOH . K 5 HOH B 5 705 43 HOH HOH . K 5 HOH B 6 706 103 HOH HOH . K 5 HOH B 7 707 208 HOH HOH . K 5 HOH B 8 708 182 HOH HOH . K 5 HOH B 9 709 212 HOH HOH . K 5 HOH B 10 710 1 HOH HOH . K 5 HOH B 11 711 203 HOH HOH . K 5 HOH B 12 712 199 HOH HOH . K 5 HOH B 13 713 65 HOH HOH . K 5 HOH B 14 714 27 HOH HOH . K 5 HOH B 15 715 110 HOH HOH . K 5 HOH B 16 716 150 HOH HOH . K 5 HOH B 17 717 15 HOH HOH . K 5 HOH B 18 718 176 HOH HOH . K 5 HOH B 19 719 200 HOH HOH . K 5 HOH B 20 720 99 HOH HOH . K 5 HOH B 21 721 198 HOH HOH . K 5 HOH B 22 722 46 HOH HOH . K 5 HOH B 23 723 3 HOH HOH . K 5 HOH B 24 724 207 HOH HOH . K 5 HOH B 25 725 119 HOH HOH . K 5 HOH B 26 726 129 HOH HOH . K 5 HOH B 27 727 9 HOH HOH . K 5 HOH B 28 728 32 HOH HOH . K 5 HOH B 29 729 55 HOH HOH . K 5 HOH B 30 730 95 HOH HOH . K 5 HOH B 31 731 90 HOH HOH . K 5 HOH B 32 732 47 HOH HOH . K 5 HOH B 33 733 33 HOH HOH . K 5 HOH B 34 734 106 HOH HOH . K 5 HOH B 35 735 202 HOH HOH . K 5 HOH B 36 736 209 HOH HOH . K 5 HOH B 37 737 19 HOH HOH . K 5 HOH B 38 738 16 HOH HOH . K 5 HOH B 39 739 85 HOH HOH . K 5 HOH B 40 740 152 HOH HOH . K 5 HOH B 41 741 120 HOH HOH . K 5 HOH B 42 742 5 HOH HOH . K 5 HOH B 43 743 12 HOH HOH . K 5 HOH B 44 744 20 HOH HOH . K 5 HOH B 45 745 10 HOH HOH . K 5 HOH B 46 746 13 HOH HOH . K 5 HOH B 47 747 24 HOH HOH . K 5 HOH B 48 748 101 HOH HOH . K 5 HOH B 49 749 215 HOH HOH . K 5 HOH B 50 750 189 HOH HOH . K 5 HOH B 51 751 135 HOH HOH . K 5 HOH B 52 752 164 HOH HOH . K 5 HOH B 53 753 100 HOH HOH . K 5 HOH B 54 754 2 HOH HOH . K 5 HOH B 55 755 146 HOH HOH . K 5 HOH B 56 756 78 HOH HOH . K 5 HOH B 57 757 206 HOH HOH . K 5 HOH B 58 758 28 HOH HOH . K 5 HOH B 59 759 71 HOH HOH . K 5 HOH B 60 760 186 HOH HOH . K 5 HOH B 61 761 126 HOH HOH . K 5 HOH B 62 762 48 HOH HOH . K 5 HOH B 63 763 145 HOH HOH . K 5 HOH B 64 764 29 HOH HOH . K 5 HOH B 65 765 211 HOH HOH . K 5 HOH B 66 766 26 HOH HOH . K 5 HOH B 67 767 50 HOH HOH . K 5 HOH B 68 768 104 HOH HOH . K 5 HOH B 69 769 193 HOH HOH . K 5 HOH B 70 770 130 HOH HOH . K 5 HOH B 71 771 53 HOH HOH . K 5 HOH B 72 772 165 HOH HOH . K 5 HOH B 73 773 63 HOH HOH . K 5 HOH B 74 774 18 HOH HOH . K 5 HOH B 75 775 21 HOH HOH . K 5 HOH B 76 776 122 HOH HOH . K 5 HOH B 77 777 37 HOH HOH . K 5 HOH B 78 778 102 HOH HOH . K 5 HOH B 79 779 8 HOH HOH . K 5 HOH B 80 780 49 HOH HOH . K 5 HOH B 81 781 31 HOH HOH . K 5 HOH B 82 782 171 HOH HOH . K 5 HOH B 83 783 177 HOH HOH . K 5 HOH B 84 784 213 HOH HOH . K 5 HOH B 85 785 131 HOH HOH . K 5 HOH B 86 786 214 HOH HOH . K 5 HOH B 87 787 30 HOH HOH . K 5 HOH B 88 788 89 HOH HOH . K 5 HOH B 89 789 72 HOH HOH . K 5 HOH B 90 790 58 HOH HOH . K 5 HOH B 91 791 140 HOH HOH . K 5 HOH B 92 792 108 HOH HOH . K 5 HOH B 93 793 136 HOH HOH . K 5 HOH B 94 794 148 HOH HOH . K 5 HOH B 95 795 195 HOH HOH . K 5 HOH B 96 796 109 HOH HOH . K 5 HOH B 97 797 179 HOH HOH . K 5 HOH B 98 798 83 HOH HOH . K 5 HOH B 99 799 210 HOH HOH . K 5 HOH B 100 800 105 HOH HOH . K 5 HOH B 101 801 45 HOH HOH . K 5 HOH B 102 802 216 HOH HOH . K 5 HOH B 103 803 123 HOH HOH . K 5 HOH B 104 804 62 HOH HOH . K 5 HOH B 105 805 217 HOH HOH . K 5 HOH B 106 806 143 HOH HOH . K 5 HOH B 107 807 86 HOH HOH . K 5 HOH B 108 808 107 HOH HOH . K 5 HOH B 109 809 40 HOH HOH . K 5 HOH B 110 810 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTV . . . I 4 89.144 223.741 177.573 1 98.91 ? S1 DTV 603 B 1 HETATM 2 C C1 DTV . . . I 4 88.705 222.201 178.395 1 100.91 ? C1 DTV 603 B 1 HETATM 3 C C2 DTV . . . I 4 87.997 221.316 177.381 1 103.39 ? C2 DTV 603 B 1 HETATM 4 O O2 DTV . . . I 4 88.604 220.082 177.293 1 106.63 ? O2 DTV 603 B 1 HETATM 5 C C3 DTV . . . I 4 86.539 221.042 177.842 1 99.71 ? C3 DTV 603 B 1 HETATM 6 O O3 DTV . . . I 4 85.967 220.507 176.69 1 89.27 ? O3 DTV 603 B 1 HETATM 7 C C4 DTV . . . I 4 85.835 222.36 178.235 1 102.4 ? C4 DTV 603 B 1 HETATM 8 S S4 DTV . . . I 4 84.803 222.906 176.836 1 100.25 ? S4 DTV 603 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #