data_7MKZ # _model_server_result.job_id iFLK9A3AO-kPl-dmyZ84Gw _model_server_result.datetime_utc '2024-11-29 10:25:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7MKZ # _exptl.entry_id 7MKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MKZ _cell.length_a 88.552 _cell.length_b 88.552 _cell.length_c 72.643 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7MKZ _atom_sites.fract_transf_matrix[1][1] 0.011293 _atom_sites.fract_transf_matrix[1][2] 0.00652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 2 GOL GOL . C 2 GOL A 1 402 3 GOL GOL . D 2 GOL A 1 403 4 GOL GOL . E 3 CL A 1 404 1 CL CL . F 3 CL A 1 405 2 CL CL . G 3 CL A 1 406 7 CL CL . H 3 CL A 1 407 8 CL CL . I 4 HOH A 1 501 347 HOH HOH . I 4 HOH A 2 502 315 HOH HOH . I 4 HOH A 3 503 336 HOH HOH . I 4 HOH A 4 504 221 HOH HOH . I 4 HOH A 5 505 95 HOH HOH . I 4 HOH A 6 506 317 HOH HOH . I 4 HOH A 7 507 290 HOH HOH . I 4 HOH A 8 508 328 HOH HOH . I 4 HOH A 9 509 108 HOH HOH . I 4 HOH A 10 510 348 HOH HOH . I 4 HOH A 11 511 308 HOH HOH . I 4 HOH A 12 512 297 HOH HOH . I 4 HOH A 13 513 86 HOH HOH . I 4 HOH A 14 514 87 HOH HOH . I 4 HOH A 15 515 49 HOH HOH . I 4 HOH A 16 516 334 HOH HOH . I 4 HOH A 17 517 167 HOH HOH . I 4 HOH A 18 518 73 HOH HOH . I 4 HOH A 19 519 91 HOH HOH . I 4 HOH A 20 520 157 HOH HOH . I 4 HOH A 21 521 144 HOH HOH . I 4 HOH A 22 522 90 HOH HOH . I 4 HOH A 23 523 31 HOH HOH . I 4 HOH A 24 524 2 HOH HOH . I 4 HOH A 25 525 102 HOH HOH . I 4 HOH A 26 526 76 HOH HOH . I 4 HOH A 27 527 239 HOH HOH . I 4 HOH A 28 528 335 HOH HOH . I 4 HOH A 29 529 324 HOH HOH . I 4 HOH A 30 530 47 HOH HOH . I 4 HOH A 31 531 187 HOH HOH . I 4 HOH A 32 532 13 HOH HOH . I 4 HOH A 33 533 143 HOH HOH . I 4 HOH A 34 534 345 HOH HOH . I 4 HOH A 35 535 146 HOH HOH . I 4 HOH A 36 536 252 HOH HOH . I 4 HOH A 37 537 85 HOH HOH . I 4 HOH A 38 538 222 HOH HOH . I 4 HOH A 39 539 215 HOH HOH . I 4 HOH A 40 540 26 HOH HOH . I 4 HOH A 41 541 59 HOH HOH . I 4 HOH A 42 542 19 HOH HOH . I 4 HOH A 43 543 97 HOH HOH . I 4 HOH A 44 544 52 HOH HOH . I 4 HOH A 45 545 147 HOH HOH . I 4 HOH A 46 546 72 HOH HOH . I 4 HOH A 47 547 166 HOH HOH . I 4 HOH A 48 548 295 HOH HOH . I 4 HOH A 49 549 151 HOH HOH . I 4 HOH A 50 550 116 HOH HOH . I 4 HOH A 51 551 63 HOH HOH . I 4 HOH A 52 552 21 HOH HOH . I 4 HOH A 53 553 1 HOH HOH . I 4 HOH A 54 554 243 HOH HOH . I 4 HOH A 55 555 29 HOH HOH . I 4 HOH A 56 556 223 HOH HOH . I 4 HOH A 57 557 41 HOH HOH . I 4 HOH A 58 558 305 HOH HOH . I 4 HOH A 59 559 113 HOH HOH . I 4 HOH A 60 560 107 HOH HOH . I 4 HOH A 61 561 53 HOH HOH . I 4 HOH A 62 562 333 HOH HOH . I 4 HOH A 63 563 39 HOH HOH . I 4 HOH A 64 564 42 HOH HOH . I 4 HOH A 65 565 10 HOH HOH . I 4 HOH A 66 566 104 HOH HOH . I 4 HOH A 67 567 80 HOH HOH . I 4 HOH A 68 568 28 HOH HOH . I 4 HOH A 69 569 11 HOH HOH . I 4 HOH A 70 570 323 HOH HOH . I 4 HOH A 71 571 164 HOH HOH . I 4 HOH A 72 572 78 HOH HOH . I 4 HOH A 73 573 100 HOH HOH . I 4 HOH A 74 574 181 HOH HOH . I 4 HOH A 75 575 188 HOH HOH . I 4 HOH A 76 576 7 HOH HOH . I 4 HOH A 77 577 82 HOH HOH . I 4 HOH A 78 578 174 HOH HOH . I 4 HOH A 79 579 94 HOH HOH . I 4 HOH A 80 580 75 HOH HOH . I 4 HOH A 81 581 8 HOH HOH . I 4 HOH A 82 582 126 HOH HOH . I 4 HOH A 83 583 5 HOH HOH . I 4 HOH A 84 584 55 HOH HOH . I 4 HOH A 85 585 343 HOH HOH . I 4 HOH A 86 586 34 HOH HOH . I 4 HOH A 87 587 43 HOH HOH . I 4 HOH A 88 588 276 HOH HOH . I 4 HOH A 89 589 192 HOH HOH . I 4 HOH A 90 590 331 HOH HOH . I 4 HOH A 91 591 327 HOH HOH . I 4 HOH A 92 592 65 HOH HOH . I 4 HOH A 93 593 17 HOH HOH . I 4 HOH A 94 594 180 HOH HOH . I 4 HOH A 95 595 170 HOH HOH . I 4 HOH A 96 596 79 HOH HOH . I 4 HOH A 97 597 18 HOH HOH . I 4 HOH A 98 598 129 HOH HOH . I 4 HOH A 99 599 51 HOH HOH . I 4 HOH A 100 600 4 HOH HOH . I 4 HOH A 101 601 98 HOH HOH . I 4 HOH A 102 602 101 HOH HOH . I 4 HOH A 103 603 168 HOH HOH . I 4 HOH A 104 604 3 HOH HOH . I 4 HOH A 105 605 103 HOH HOH . I 4 HOH A 106 606 20 HOH HOH . I 4 HOH A 107 607 185 HOH HOH . I 4 HOH A 108 608 99 HOH HOH . I 4 HOH A 109 609 232 HOH HOH . I 4 HOH A 110 610 12 HOH HOH . I 4 HOH A 111 611 9 HOH HOH . I 4 HOH A 112 612 112 HOH HOH . I 4 HOH A 113 613 125 HOH HOH . I 4 HOH A 114 614 163 HOH HOH . I 4 HOH A 115 615 22 HOH HOH . I 4 HOH A 116 616 96 HOH HOH . I 4 HOH A 117 617 265 HOH HOH . I 4 HOH A 118 618 117 HOH HOH . I 4 HOH A 119 619 89 HOH HOH . I 4 HOH A 120 620 109 HOH HOH . I 4 HOH A 121 621 50 HOH HOH . I 4 HOH A 122 622 74 HOH HOH . I 4 HOH A 123 623 23 HOH HOH . I 4 HOH A 124 624 15 HOH HOH . I 4 HOH A 125 625 6 HOH HOH . I 4 HOH A 126 626 66 HOH HOH . I 4 HOH A 127 627 68 HOH HOH . I 4 HOH A 128 628 69 HOH HOH . I 4 HOH A 129 629 61 HOH HOH . I 4 HOH A 130 630 24 HOH HOH . I 4 HOH A 131 631 268 HOH HOH . I 4 HOH A 132 632 37 HOH HOH . I 4 HOH A 133 633 60 HOH HOH . I 4 HOH A 134 634 64 HOH HOH . I 4 HOH A 135 635 136 HOH HOH . I 4 HOH A 136 636 186 HOH HOH . I 4 HOH A 137 637 195 HOH HOH . I 4 HOH A 138 638 106 HOH HOH . I 4 HOH A 139 639 205 HOH HOH . I 4 HOH A 140 640 320 HOH HOH . I 4 HOH A 141 641 253 HOH HOH . I 4 HOH A 142 642 25 HOH HOH . I 4 HOH A 143 643 242 HOH HOH . I 4 HOH A 144 644 16 HOH HOH . I 4 HOH A 145 645 137 HOH HOH . I 4 HOH A 146 646 149 HOH HOH . I 4 HOH A 147 647 77 HOH HOH . I 4 HOH A 148 648 88 HOH HOH . I 4 HOH A 149 649 127 HOH HOH . I 4 HOH A 150 650 58 HOH HOH . I 4 HOH A 151 651 81 HOH HOH . I 4 HOH A 152 652 14 HOH HOH . I 4 HOH A 153 653 179 HOH HOH . I 4 HOH A 154 654 122 HOH HOH . I 4 HOH A 155 655 148 HOH HOH . I 4 HOH A 156 656 156 HOH HOH . I 4 HOH A 157 657 93 HOH HOH . I 4 HOH A 158 658 206 HOH HOH . I 4 HOH A 159 659 311 HOH HOH . I 4 HOH A 160 660 254 HOH HOH . I 4 HOH A 161 661 67 HOH HOH . I 4 HOH A 162 662 70 HOH HOH . I 4 HOH A 163 663 301 HOH HOH . I 4 HOH A 164 664 337 HOH HOH . I 4 HOH A 165 665 298 HOH HOH . I 4 HOH A 166 666 111 HOH HOH . I 4 HOH A 167 667 135 HOH HOH . I 4 HOH A 168 668 62 HOH HOH . I 4 HOH A 169 669 32 HOH HOH . I 4 HOH A 170 670 57 HOH HOH . I 4 HOH A 171 671 302 HOH HOH . I 4 HOH A 172 672 216 HOH HOH . I 4 HOH A 173 673 236 HOH HOH . I 4 HOH A 174 674 189 HOH HOH . I 4 HOH A 175 675 267 HOH HOH . I 4 HOH A 176 676 175 HOH HOH . I 4 HOH A 177 677 139 HOH HOH . I 4 HOH A 178 678 326 HOH HOH . I 4 HOH A 179 679 169 HOH HOH . I 4 HOH A 180 680 119 HOH HOH . I 4 HOH A 181 681 120 HOH HOH . I 4 HOH A 182 682 83 HOH HOH . I 4 HOH A 183 683 92 HOH HOH . I 4 HOH A 184 684 212 HOH HOH . I 4 HOH A 185 685 54 HOH HOH . I 4 HOH A 186 686 121 HOH HOH . I 4 HOH A 187 687 27 HOH HOH . I 4 HOH A 188 688 105 HOH HOH . I 4 HOH A 189 689 145 HOH HOH . I 4 HOH A 190 690 220 HOH HOH . I 4 HOH A 191 691 201 HOH HOH . I 4 HOH A 192 692 190 HOH HOH . I 4 HOH A 193 693 325 HOH HOH . I 4 HOH A 194 694 319 HOH HOH . I 4 HOH A 195 695 218 HOH HOH . I 4 HOH A 196 696 71 HOH HOH . I 4 HOH A 197 697 159 HOH HOH . I 4 HOH A 198 698 56 HOH HOH . I 4 HOH A 199 699 349 HOH HOH . I 4 HOH A 200 700 131 HOH HOH . I 4 HOH A 201 701 182 HOH HOH . I 4 HOH A 202 702 197 HOH HOH . I 4 HOH A 203 703 312 HOH HOH . I 4 HOH A 204 704 160 HOH HOH . I 4 HOH A 205 705 33 HOH HOH . I 4 HOH A 206 706 261 HOH HOH . I 4 HOH A 207 707 158 HOH HOH . I 4 HOH A 208 708 150 HOH HOH . I 4 HOH A 209 709 183 HOH HOH . I 4 HOH A 210 710 142 HOH HOH . I 4 HOH A 211 711 304 HOH HOH . I 4 HOH A 212 712 271 HOH HOH . I 4 HOH A 213 713 226 HOH HOH . I 4 HOH A 214 714 199 HOH HOH . I 4 HOH A 215 715 300 HOH HOH . I 4 HOH A 216 716 134 HOH HOH . I 4 HOH A 217 717 233 HOH HOH . I 4 HOH A 218 718 194 HOH HOH . I 4 HOH A 219 719 340 HOH HOH . I 4 HOH A 220 720 132 HOH HOH . I 4 HOH A 221 721 318 HOH HOH . I 4 HOH A 222 722 341 HOH HOH . I 4 HOH A 223 723 152 HOH HOH . I 4 HOH A 224 724 207 HOH HOH . I 4 HOH A 225 725 322 HOH HOH . I 4 HOH A 226 726 313 HOH HOH . I 4 HOH A 227 727 155 HOH HOH . I 4 HOH A 228 728 154 HOH HOH . I 4 HOH A 229 729 138 HOH HOH . I 4 HOH A 230 730 140 HOH HOH . I 4 HOH A 231 731 306 HOH HOH . I 4 HOH A 232 732 342 HOH HOH . I 4 HOH A 233 733 46 HOH HOH . I 4 HOH A 234 734 299 HOH HOH . I 4 HOH A 235 735 240 HOH HOH . I 4 HOH A 236 736 350 HOH HOH . I 4 HOH A 237 737 230 HOH HOH . I 4 HOH A 238 738 237 HOH HOH . I 4 HOH A 239 739 314 HOH HOH . I 4 HOH A 240 740 173 HOH HOH . I 4 HOH A 241 741 316 HOH HOH . I 4 HOH A 242 742 123 HOH HOH . I 4 HOH A 243 743 203 HOH HOH . I 4 HOH A 244 744 275 HOH HOH . I 4 HOH A 245 745 270 HOH HOH . I 4 HOH A 246 746 332 HOH HOH . I 4 HOH A 247 747 110 HOH HOH . I 4 HOH A 248 748 204 HOH HOH . I 4 HOH A 249 749 344 HOH HOH . I 4 HOH A 250 750 191 HOH HOH . I 4 HOH A 251 751 219 HOH HOH . I 4 HOH A 252 752 309 HOH HOH . I 4 HOH A 253 753 141 HOH HOH . I 4 HOH A 254 754 115 HOH HOH . I 4 HOH A 255 755 128 HOH HOH . I 4 HOH A 256 756 162 HOH HOH . I 4 HOH A 257 757 329 HOH HOH . I 4 HOH A 258 758 250 HOH HOH . I 4 HOH A 259 759 202 HOH HOH . I 4 HOH A 260 760 351 HOH HOH . I 4 HOH A 261 761 30 HOH HOH . I 4 HOH A 262 762 177 HOH HOH . I 4 HOH A 263 763 84 HOH HOH . I 4 HOH A 264 764 133 HOH HOH . I 4 HOH A 265 765 130 HOH HOH . I 4 HOH A 266 766 176 HOH HOH . I 4 HOH A 267 767 249 HOH HOH . I 4 HOH A 268 768 171 HOH HOH . I 4 HOH A 269 769 257 HOH HOH . I 4 HOH A 270 770 200 HOH HOH . I 4 HOH A 271 771 258 HOH HOH . I 4 HOH A 272 772 214 HOH HOH . I 4 HOH A 273 773 272 HOH HOH . I 4 HOH A 274 774 231 HOH HOH . I 4 HOH A 275 775 266 HOH HOH . I 4 HOH A 276 776 193 HOH HOH . I 4 HOH A 277 777 211 HOH HOH . I 4 HOH A 278 778 330 HOH HOH . I 4 HOH A 279 779 346 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -11.327 25.32 -1.972 1 48.1 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 -11.322 25.047 -3.325 1 34.99 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 -10.552 26.631 -1.794 1 48.06 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 -11.324 27.764 -2.058 1 52.74 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 -10.028 26.556 -0.362 1 36.77 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 -8.672 26.219 -0.479 1 52.03 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #