data_7MM5 # _model_server_result.job_id wHnI1-AphY7iP4e2vub1SA _model_server_result.datetime_utc '2024-12-19 04:03:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 7MM5 # _exptl.entry_id 7MM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MM5 _cell.length_a 54.276 _cell.length_b 58.629 _cell.length_c 59.834 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 116 A CYS 1097 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A SG CYS 118 A CYS 1099 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A SG CYS 164 A CYS 1145 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A ND1 HIS 168 A HIS 1149 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7MM5 _atom_sites.fract_transf_matrix[1][1] 0.018424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1201 1201 ZN ZN . C 3 ZK4 A 1 1202 1301 ZK4 LIG . D 4 EDO A 1 1203 1501 EDO EDO . E 4 EDO A 1 1204 1601 EDO EDO . F 5 SO4 A 1 1205 1 SO4 SO4 . G 6 HOH A 1 1301 56 HOH HOH . G 6 HOH A 2 1302 90 HOH HOH . G 6 HOH A 3 1303 88 HOH HOH . G 6 HOH A 4 1304 24 HOH HOH . G 6 HOH A 5 1305 69 HOH HOH . G 6 HOH A 6 1306 122 HOH HOH . G 6 HOH A 7 1307 97 HOH HOH . G 6 HOH A 8 1308 43 HOH HOH . G 6 HOH A 9 1309 13 HOH HOH . G 6 HOH A 10 1310 81 HOH HOH . G 6 HOH A 11 1311 63 HOH HOH . G 6 HOH A 12 1312 17 HOH HOH . G 6 HOH A 13 1313 18 HOH HOH . G 6 HOH A 14 1314 79 HOH HOH . G 6 HOH A 15 1315 86 HOH HOH . G 6 HOH A 16 1316 31 HOH HOH . G 6 HOH A 17 1317 38 HOH HOH . G 6 HOH A 18 1318 14 HOH HOH . G 6 HOH A 19 1319 16 HOH HOH . G 6 HOH A 20 1320 54 HOH HOH . G 6 HOH A 21 1321 11 HOH HOH . G 6 HOH A 22 1322 125 HOH HOH . G 6 HOH A 23 1323 92 HOH HOH . G 6 HOH A 24 1324 39 HOH HOH . G 6 HOH A 25 1325 30 HOH HOH . G 6 HOH A 26 1326 91 HOH HOH . G 6 HOH A 27 1327 45 HOH HOH . G 6 HOH A 28 1328 117 HOH HOH . G 6 HOH A 29 1329 32 HOH HOH . G 6 HOH A 30 1330 67 HOH HOH . G 6 HOH A 31 1331 5 HOH HOH . G 6 HOH A 32 1332 60 HOH HOH . G 6 HOH A 33 1333 82 HOH HOH . G 6 HOH A 34 1334 83 HOH HOH . G 6 HOH A 35 1335 27 HOH HOH . G 6 HOH A 36 1336 36 HOH HOH . G 6 HOH A 37 1337 106 HOH HOH . G 6 HOH A 38 1338 35 HOH HOH . G 6 HOH A 39 1339 1 HOH HOH . G 6 HOH A 40 1340 131 HOH HOH . G 6 HOH A 41 1341 76 HOH HOH . G 6 HOH A 42 1342 12 HOH HOH . G 6 HOH A 43 1343 10 HOH HOH . G 6 HOH A 44 1344 44 HOH HOH . G 6 HOH A 45 1345 62 HOH HOH . G 6 HOH A 46 1346 2 HOH HOH . G 6 HOH A 47 1347 33 HOH HOH . G 6 HOH A 48 1348 121 HOH HOH . G 6 HOH A 49 1349 15 HOH HOH . G 6 HOH A 50 1350 6 HOH HOH . G 6 HOH A 51 1351 96 HOH HOH . G 6 HOH A 52 1352 28 HOH HOH . G 6 HOH A 53 1353 42 HOH HOH . G 6 HOH A 54 1354 57 HOH HOH . G 6 HOH A 55 1355 20 HOH HOH . G 6 HOH A 56 1356 127 HOH HOH . G 6 HOH A 57 1357 111 HOH HOH . G 6 HOH A 58 1358 109 HOH HOH . G 6 HOH A 59 1359 19 HOH HOH . G 6 HOH A 60 1360 59 HOH HOH . G 6 HOH A 61 1361 47 HOH HOH . G 6 HOH A 62 1362 107 HOH HOH . G 6 HOH A 63 1363 21 HOH HOH . G 6 HOH A 64 1364 9 HOH HOH . G 6 HOH A 65 1365 7 HOH HOH . G 6 HOH A 66 1366 50 HOH HOH . G 6 HOH A 67 1367 132 HOH HOH . G 6 HOH A 68 1368 3 HOH HOH . G 6 HOH A 69 1369 65 HOH HOH . G 6 HOH A 70 1370 40 HOH HOH . G 6 HOH A 71 1371 120 HOH HOH . G 6 HOH A 72 1372 22 HOH HOH . G 6 HOH A 73 1373 102 HOH HOH . G 6 HOH A 74 1374 113 HOH HOH . G 6 HOH A 75 1375 66 HOH HOH . G 6 HOH A 76 1376 8 HOH HOH . G 6 HOH A 77 1377 73 HOH HOH . G 6 HOH A 78 1378 49 HOH HOH . G 6 HOH A 79 1379 26 HOH HOH . G 6 HOH A 80 1380 52 HOH HOH . G 6 HOH A 81 1381 25 HOH HOH . G 6 HOH A 82 1382 4 HOH HOH . G 6 HOH A 83 1383 93 HOH HOH . G 6 HOH A 84 1384 29 HOH HOH . G 6 HOH A 85 1385 46 HOH HOH . G 6 HOH A 86 1386 23 HOH HOH . G 6 HOH A 87 1387 133 HOH HOH . G 6 HOH A 88 1388 61 HOH HOH . G 6 HOH A 89 1389 78 HOH HOH . G 6 HOH A 90 1390 37 HOH HOH . G 6 HOH A 91 1391 124 HOH HOH . G 6 HOH A 92 1392 110 HOH HOH . G 6 HOH A 93 1393 130 HOH HOH . G 6 HOH A 94 1394 41 HOH HOH . G 6 HOH A 95 1395 75 HOH HOH . G 6 HOH A 96 1396 89 HOH HOH . G 6 HOH A 97 1397 51 HOH HOH . G 6 HOH A 98 1398 55 HOH HOH . G 6 HOH A 99 1399 118 HOH HOH . G 6 HOH A 100 1400 129 HOH HOH . G 6 HOH A 101 1401 115 HOH HOH . G 6 HOH A 102 1402 53 HOH HOH . G 6 HOH A 103 1403 71 HOH HOH . G 6 HOH A 104 1404 99 HOH HOH . G 6 HOH A 105 1405 95 HOH HOH . G 6 HOH A 106 1406 68 HOH HOH . G 6 HOH A 107 1407 119 HOH HOH . G 6 HOH A 108 1408 116 HOH HOH . G 6 HOH A 109 1409 64 HOH HOH . G 6 HOH A 110 1410 123 HOH HOH . G 6 HOH A 111 1411 128 HOH HOH . G 6 HOH A 112 1412 87 HOH HOH . G 6 HOH A 113 1413 126 HOH HOH . G 6 HOH A 114 1414 101 HOH HOH . G 6 HOH A 115 1415 103 HOH HOH . G 6 HOH A 116 1416 72 HOH HOH . G 6 HOH A 117 1417 85 HOH HOH . G 6 HOH A 118 1418 48 HOH HOH . G 6 HOH A 119 1419 34 HOH HOH . G 6 HOH A 120 1420 114 HOH HOH . G 6 HOH A 121 1421 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -3.371 -16.488 24.141 1 37.75 ? C1 EDO 1204 A 1 HETATM 2 O O1 EDO . . . E 4 -2.276 -17.005 24.906 1 47.42 ? O1 EDO 1204 A 1 HETATM 3 C C2 EDO . . . E 4 -4.234 -17.642 23.648 1 36.5 ? C2 EDO 1204 A 1 HETATM 4 O O2 EDO . . . E 4 -4.064 -18.772 24.512 1 48.13 ? O2 EDO 1204 A 1 HETATM 5 H H11 EDO . . . E 4 -2.993 -15.916 23.291 1 45.3 ? H11 EDO 1204 A 1 HETATM 6 H H12 EDO . . . E 4 -3.969 -15.814 24.759 1 45.3 ? H12 EDO 1204 A 1 HETATM 7 H HO1 EDO . . . E 4 -1.719 -16.274 25.207 1 56.91 ? HO1 EDO 1204 A 1 HETATM 8 H H21 EDO . . . E 4 -5.283 -17.341 23.633 1 43.81 ? H21 EDO 1204 A 1 HETATM 9 H H22 EDO . . . E 4 -3.947 -17.91 22.628 1 43.81 ? H22 EDO 1204 A 1 HETATM 10 H HO2 EDO . . . E 4 -4.66 -19.482 24.236 1 57.76 ? HO2 EDO 1204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 10 #