data_7MMN # _model_server_result.job_id Ip_mNI_eFddAOO1JZF_a9g _model_server_result.datetime_utc '2024-10-18 04:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 7MMN # _exptl.entry_id 7MMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.138 _cell.angle_gamma 90 _cell.entry_id 7MMN _cell.length_a 223.423 _cell.length_b 183.002 _cell.length_c 135.785 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 L CYS 24 1_555 A SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 24 E CYS 24 1_555 B SG CYS 89 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 139 E CYS 139 1_555 B SG CYS 199 E CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 24 G CYS 24 1_555 C SG CYS 89 G CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 C SG CYS 139 G CYS 139 1_555 C SG CYS 199 G CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 D SG CYS 12 A CYS 37 1_555 E SG CYS 303 B CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 44 A CYS 69 1_555 E SG CYS 76 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 E SG CYS 19 B CYS 155 1_555 E SG CYS 154 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 E SG CYS 177 B CYS 313 1_555 E SG CYS 207 B CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 E SG CYS 186 B CYS 322 1_555 E SG CYS 197 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 E SG CYS 222 B CYS 358 1_555 E SG CYS 231 B CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 E SG CYS 246 B CYS 382 1_555 E SG CYS 257 B CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 E SG CYS 280 B CYS 416 1_555 E SG CYS 286 B CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 F SG CYS 12 C CYS 37 1_555 G SG CYS 303 I CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 F SG CYS 44 C CYS 69 1_555 G SG CYS 76 I CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 G SG CYS 19 I CYS 155 1_555 G SG CYS 154 I CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 G SG CYS 177 I CYS 313 1_555 G SG CYS 207 I CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf19 G SG CYS 186 I CYS 322 1_555 G SG CYS 197 I CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 G SG CYS 222 I CYS 358 1_555 G SG CYS 231 I CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf21 G SG CYS 246 I CYS 382 1_555 G SG CYS 257 I CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf22 G SG CYS 280 I CYS 416 1_555 G SG CYS 286 I CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 H SG CYS 12 J CYS 37 1_555 I SG CYS 303 K CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 H SG CYS 44 J CYS 69 1_555 I SG CYS 76 K CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf25 I SG CYS 19 K CYS 155 1_555 I SG CYS 154 K CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf26 I SG CYS 177 K CYS 313 1_555 I SG CYS 207 K CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf27 I SG CYS 186 K CYS 322 1_555 I SG CYS 197 K CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 I SG CYS 222 K CYS 358 1_555 I SG CYS 231 K CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf29 I SG CYS 246 K CYS 382 1_555 I SG CYS 257 K CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf30 I SG CYS 280 K CYS 416 1_555 I SG CYS 286 K CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf31 J SG CYS 22 M CYS 22 1_555 J SG CYS 96 M CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf32 J SG CYS 150 M CYS 150 1_555 J SG CYS 206 M CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf33 K SG CYS 22 H CYS 22 1_555 K SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf34 K SG CYS 150 H CYS 150 1_555 K SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf35 L SG CYS 22 D CYS 22 1_555 L SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? disulf ? disulf36 L SG CYS 150 D CYS 150 1_555 L SG CYS 206 D CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 E ND2 ASN 364 B ASN 500 1_555 M C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7MMN _atom_sites.fract_transf_matrix[1][1] 0.004476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 NAG B 1 601 601 NAG NAG . N 6 GOL M 1 301 304 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 6 51.536 52.412 17.315 1 41.27 ? C1 GOL 301 M 1 HETATM 2 O O1 GOL . . . N 6 51.426 53.799 17.273 1 36.33 ? O1 GOL 301 M 1 HETATM 3 C C2 GOL . . . N 6 50.698 51.923 18.517 1 38.05 ? C2 GOL 301 M 1 HETATM 4 O O2 GOL . . . N 6 49.523 52.647 18.664 1 31.79 ? O2 GOL 301 M 1 HETATM 5 C C3 GOL . . . N 6 50.436 50.431 18.206 1 35.66 ? C3 GOL 301 M 1 HETATM 6 O O3 GOL . . . N 6 49.345 50.038 18.977 1 24.9 ? O3 GOL 301 M 1 # _model_server_stats.io_time_ms 236 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #