data_7MMN # _model_server_result.job_id sDmghDlC0rJNt-dE4Z4xkg _model_server_result.datetime_utc '2024-11-26 01:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":601}' # _entry.id 7MMN # _exptl.entry_id 7MMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.138 _cell.angle_gamma 90 _cell.entry_id 7MMN _cell.length_a 223.423 _cell.length_b 183.002 _cell.length_c 135.785 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 L CYS 24 1_555 A SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 24 E CYS 24 1_555 B SG CYS 89 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 139 E CYS 139 1_555 B SG CYS 199 E CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 24 G CYS 24 1_555 C SG CYS 89 G CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 C SG CYS 139 G CYS 139 1_555 C SG CYS 199 G CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 D SG CYS 12 A CYS 37 1_555 E SG CYS 303 B CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 44 A CYS 69 1_555 E SG CYS 76 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 E SG CYS 19 B CYS 155 1_555 E SG CYS 154 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 E SG CYS 177 B CYS 313 1_555 E SG CYS 207 B CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 E SG CYS 186 B CYS 322 1_555 E SG CYS 197 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 E SG CYS 222 B CYS 358 1_555 E SG CYS 231 B CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 E SG CYS 246 B CYS 382 1_555 E SG CYS 257 B CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 E SG CYS 280 B CYS 416 1_555 E SG CYS 286 B CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 F SG CYS 12 C CYS 37 1_555 G SG CYS 303 I CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 F SG CYS 44 C CYS 69 1_555 G SG CYS 76 I CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 G SG CYS 19 I CYS 155 1_555 G SG CYS 154 I CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 G SG CYS 177 I CYS 313 1_555 G SG CYS 207 I CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf19 G SG CYS 186 I CYS 322 1_555 G SG CYS 197 I CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 G SG CYS 222 I CYS 358 1_555 G SG CYS 231 I CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf21 G SG CYS 246 I CYS 382 1_555 G SG CYS 257 I CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf22 G SG CYS 280 I CYS 416 1_555 G SG CYS 286 I CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 H SG CYS 12 J CYS 37 1_555 I SG CYS 303 K CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 H SG CYS 44 J CYS 69 1_555 I SG CYS 76 K CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf25 I SG CYS 19 K CYS 155 1_555 I SG CYS 154 K CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf26 I SG CYS 177 K CYS 313 1_555 I SG CYS 207 K CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf27 I SG CYS 186 K CYS 322 1_555 I SG CYS 197 K CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 I SG CYS 222 K CYS 358 1_555 I SG CYS 231 K CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf29 I SG CYS 246 K CYS 382 1_555 I SG CYS 257 K CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf30 I SG CYS 280 K CYS 416 1_555 I SG CYS 286 K CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf31 J SG CYS 22 M CYS 22 1_555 J SG CYS 96 M CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf32 J SG CYS 150 M CYS 150 1_555 J SG CYS 206 M CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf33 K SG CYS 22 H CYS 22 1_555 K SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf34 K SG CYS 150 H CYS 150 1_555 K SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf35 L SG CYS 22 D CYS 22 1_555 L SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? disulf ? disulf36 L SG CYS 150 D CYS 150 1_555 L SG CYS 206 D CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 E ND2 ASN 364 B ASN 500 1_555 M C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 248 n n C1 O1 NAG sing 249 n n C1 O5 NAG sing 250 n n C1 H1 NAG sing 251 n n C2 C3 NAG sing 252 n n C2 N2 NAG sing 253 n n C2 H2 NAG sing 254 n n C3 C4 NAG sing 255 n n C3 O3 NAG sing 256 n n C3 H3 NAG sing 257 n n C4 C5 NAG sing 258 n n C4 O4 NAG sing 259 n n C4 H4 NAG sing 260 n n C5 C6 NAG sing 261 n n C5 O5 NAG sing 262 n n C5 H5 NAG sing 263 n n C6 O6 NAG sing 264 n n C6 H61 NAG sing 265 n n C6 H62 NAG sing 266 n n C7 C8 NAG sing 267 n n C7 N2 NAG sing 268 n n C7 O7 NAG doub 269 n n C8 H81 NAG sing 270 n n C8 H82 NAG sing 271 n n C8 H83 NAG sing 272 n n N2 HN2 NAG sing 273 n n O1 HO1 NAG sing 274 n n O3 HO3 NAG sing 275 n n O4 HO4 NAG sing 276 n n O6 HO6 NAG sing 277 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MMN _atom_sites.fract_transf_matrix[1][1] 0.004476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 NAG B 1 601 601 NAG NAG . N 6 GOL M 1 301 304 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 5 22.679 17.31 -6.124 1 65.61 ? C1 NAG 601 B 1 HETATM 2 C C2 NAG . . . M 5 22.543 18.734 -5.605 1 75.39 ? C2 NAG 601 B 1 HETATM 3 C C3 NAG . . . M 5 21.078 19.072 -5.409 1 82.28 ? C3 NAG 601 B 1 HETATM 4 C C4 NAG . . . M 5 20.392 19.174 -6.763 1 81.09 ? C4 NAG 601 B 1 HETATM 5 C C5 NAG . . . M 5 20.808 18.027 -7.692 1 77.02 ? C5 NAG 601 B 1 HETATM 6 C C6 NAG . . . M 5 21.654 18.47 -8.868 1 67.96 ? C6 NAG 601 B 1 HETATM 7 C C7 NAG . . . M 5 24.495 19.476 -4.297 1 66.63 ? C7 NAG 601 B 1 HETATM 8 C C8 NAG . . . M 5 25.077 19.958 -5.594 1 62.57 ? C8 NAG 601 B 1 HETATM 9 N N2 NAG . . . M 5 23.285 18.907 -4.365 1 73.33 ? N2 NAG 601 B 1 HETATM 10 O O3 NAG . . . M 5 20.96 20.305 -4.707 1 80.13 ? O3 NAG 601 B 1 HETATM 11 O O4 NAG . . . M 5 18.98 19.152 -6.584 1 77.54 ? O4 NAG 601 B 1 HETATM 12 O O5 NAG . . . M 5 21.53 16.979 -7.01 1 72.25 ? O5 NAG 601 B 1 HETATM 13 O O6 NAG . . . M 5 20.926 18.433 -10.088 1 58.4 ? O6 NAG 601 B 1 HETATM 14 O O7 NAG . . . M 5 25.092 19.601 -3.233 1 66.15 ? O7 NAG 601 B 1 # _model_server_stats.io_time_ms 253 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #