data_7MMZ # _model_server_result.job_id zb9T5TLjlM8KlqCgBxxeZw _model_server_result.datetime_utc '2025-07-31 22:14:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7MMZ # _exptl.entry_id 7MMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.274 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MMZ _cell.length_a 74.93 _cell.length_b 74.93 _cell.length_c 228.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H18 N5 O7 P' _chem_comp.formula_weight 375.274 _chem_comp.id WTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' WTA sing 385 n n N3 C2 WTA doub 386 n y N3 C4 WTA sing 387 n y C2 N1 WTA sing 388 n y C1' C2' WTA sing 389 n n C1' O4' WTA sing 390 n n C1' N9 WTA sing 391 n n C2' C3' WTA sing 392 n n O4' C4' WTA sing 393 n n C4 N9 WTA sing 394 n y C4 C5 WTA doub 395 n y N1 C6 WTA doub 396 n y N9 C8 WTA sing 397 n y C4' C3' WTA sing 398 n n C4' C5' WTA sing 399 n n C3' O3' WTA sing 400 n n C6 C5 WTA sing 401 n y C6 N6 WTA sing 402 n n C5 N7 WTA sing 403 n y O5' C5' WTA sing 404 n n O5' P WTA sing 405 n n C8 N7 WTA doub 406 n y O2P P WTA doub 407 n n P O1P WTA sing 408 n n P O3P WTA sing 409 n n C1P O3P WTA sing 410 n n C1P C2P WTA sing 411 n n C1' H1 WTA sing 412 n n C1P H2 WTA sing 413 n n C1P H3 WTA sing 414 n n C2 H4 WTA sing 415 n n C2' H5 WTA sing 416 n n C2P H6 WTA sing 417 n n C2P H7 WTA sing 418 n n C2P H8 WTA sing 419 n n C3' H9 WTA sing 420 n n C4' H10 WTA sing 421 n n C5' H11 WTA sing 422 n n C5' H12 WTA sing 423 n n C8 H13 WTA sing 424 n n N6 H14 WTA sing 425 n n N6 H15 WTA sing 426 n n O1P H16 WTA sing 427 n n O2' H17 WTA sing 428 n n O3' H18 WTA sing 429 n n # _atom_sites.entry_id 7MMZ _atom_sites.fract_transf_matrix[1][1] 0.013346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WTA A 1 701 600 WTA WTA . C 3 EDO A 1 702 601 EDO EDO . D 4 HOH A 1 801 176 HOH HOH . D 4 HOH A 2 802 157 HOH HOH . D 4 HOH A 3 803 108 HOH HOH . D 4 HOH A 4 804 133 HOH HOH . D 4 HOH A 5 805 101 HOH HOH . D 4 HOH A 6 806 177 HOH HOH . D 4 HOH A 7 807 24 HOH HOH . D 4 HOH A 8 808 62 HOH HOH . D 4 HOH A 9 809 95 HOH HOH . D 4 HOH A 10 810 25 HOH HOH . D 4 HOH A 11 811 2 HOH HOH . D 4 HOH A 12 812 96 HOH HOH . D 4 HOH A 13 813 16 HOH HOH . D 4 HOH A 14 814 110 HOH HOH . D 4 HOH A 15 815 87 HOH HOH . D 4 HOH A 16 816 106 HOH HOH . D 4 HOH A 17 817 86 HOH HOH . D 4 HOH A 18 818 7 HOH HOH . D 4 HOH A 19 819 125 HOH HOH . D 4 HOH A 20 820 98 HOH HOH . D 4 HOH A 21 821 64 HOH HOH . D 4 HOH A 22 822 154 HOH HOH . D 4 HOH A 23 823 53 HOH HOH . D 4 HOH A 24 824 92 HOH HOH . D 4 HOH A 25 825 97 HOH HOH . D 4 HOH A 26 826 93 HOH HOH . D 4 HOH A 27 827 104 HOH HOH . D 4 HOH A 28 828 136 HOH HOH . D 4 HOH A 29 829 45 HOH HOH . D 4 HOH A 30 830 15 HOH HOH . D 4 HOH A 31 831 89 HOH HOH . D 4 HOH A 32 832 50 HOH HOH . D 4 HOH A 33 833 172 HOH HOH . D 4 HOH A 34 834 120 HOH HOH . D 4 HOH A 35 835 91 HOH HOH . D 4 HOH A 36 836 128 HOH HOH . D 4 HOH A 37 837 52 HOH HOH . D 4 HOH A 38 838 102 HOH HOH . D 4 HOH A 39 839 39 HOH HOH . D 4 HOH A 40 840 118 HOH HOH . D 4 HOH A 41 841 75 HOH HOH . D 4 HOH A 42 842 43 HOH HOH . D 4 HOH A 43 843 174 HOH HOH . D 4 HOH A 44 844 49 HOH HOH . D 4 HOH A 45 845 72 HOH HOH . D 4 HOH A 46 846 73 HOH HOH . D 4 HOH A 47 847 48 HOH HOH . D 4 HOH A 48 848 76 HOH HOH . D 4 HOH A 49 849 47 HOH HOH . D 4 HOH A 50 850 51 HOH HOH . D 4 HOH A 51 851 32 HOH HOH . D 4 HOH A 52 852 130 HOH HOH . D 4 HOH A 53 853 78 HOH HOH . D 4 HOH A 54 854 132 HOH HOH . D 4 HOH A 55 855 60 HOH HOH . D 4 HOH A 56 856 126 HOH HOH . D 4 HOH A 57 857 82 HOH HOH . D 4 HOH A 58 858 88 HOH HOH . D 4 HOH A 59 859 116 HOH HOH . D 4 HOH A 60 860 38 HOH HOH . D 4 HOH A 61 861 44 HOH HOH . D 4 HOH A 62 862 155 HOH HOH . D 4 HOH A 63 863 56 HOH HOH . D 4 HOH A 64 864 59 HOH HOH . D 4 HOH A 65 865 117 HOH HOH . D 4 HOH A 66 866 68 HOH HOH . D 4 HOH A 67 867 41 HOH HOH . D 4 HOH A 68 868 103 HOH HOH . D 4 HOH A 69 869 42 HOH HOH . D 4 HOH A 70 870 61 HOH HOH . D 4 HOH A 71 871 158 HOH HOH . D 4 HOH A 72 872 123 HOH HOH . D 4 HOH A 73 873 149 HOH HOH . D 4 HOH A 74 874 85 HOH HOH . D 4 HOH A 75 875 71 HOH HOH . D 4 HOH A 76 876 21 HOH HOH . D 4 HOH A 77 877 28 HOH HOH . D 4 HOH A 78 878 57 HOH HOH . D 4 HOH A 79 879 80 HOH HOH . D 4 HOH A 80 880 168 HOH HOH . D 4 HOH A 81 881 81 HOH HOH . D 4 HOH A 82 882 113 HOH HOH . D 4 HOH A 83 883 40 HOH HOH . D 4 HOH A 84 884 54 HOH HOH . D 4 HOH A 85 885 46 HOH HOH . D 4 HOH A 86 886 170 HOH HOH . D 4 HOH A 87 887 33 HOH HOH . D 4 HOH A 88 888 139 HOH HOH . D 4 HOH A 89 889 164 HOH HOH . D 4 HOH A 90 890 165 HOH HOH . D 4 HOH A 91 891 147 HOH HOH . D 4 HOH A 92 892 121 HOH HOH . D 4 HOH A 93 893 166 HOH HOH . D 4 HOH A 94 894 163 HOH HOH . D 4 HOH A 95 895 148 HOH HOH . D 4 HOH A 96 896 70 HOH HOH . D 4 HOH A 97 897 69 HOH HOH . D 4 HOH A 98 898 77 HOH HOH . D 4 HOH A 99 899 162 HOH HOH . D 4 HOH A 100 900 9 HOH HOH . D 4 HOH A 101 901 144 HOH HOH . D 4 HOH A 102 902 74 HOH HOH . D 4 HOH A 103 903 160 HOH HOH . D 4 HOH A 104 904 161 HOH HOH . D 4 HOH A 105 905 79 HOH HOH . D 4 HOH A 106 906 67 HOH HOH . D 4 HOH A 107 907 111 HOH HOH . D 4 HOH A 108 908 127 HOH HOH . D 4 HOH A 109 909 109 HOH HOH . D 4 HOH A 110 910 169 HOH HOH . D 4 HOH A 111 911 105 HOH HOH . D 4 HOH A 112 912 151 HOH HOH . D 4 HOH A 113 913 100 HOH HOH . D 4 HOH A 114 914 150 HOH HOH . D 4 HOH A 115 915 134 HOH HOH . D 4 HOH A 116 916 153 HOH HOH . D 4 HOH A 117 917 83 HOH HOH . D 4 HOH A 118 918 55 HOH HOH . D 4 HOH A 119 919 99 HOH HOH . D 4 HOH A 120 920 167 HOH HOH . D 4 HOH A 121 921 173 HOH HOH . D 4 HOH A 122 922 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' WTA . . . B 2 -3.581 26.556 25.56 1 36.8 ? C1' WTA 701 A 1 HETATM 2 C C1P WTA . . . B 2 -7.655 26.272 21.625 1 31.3 ? C1P WTA 701 A 1 HETATM 3 C C2 WTA . . . B 2 -1.88 30.482 26.562 1 37.04 ? C2 WTA 701 A 1 HETATM 4 C C2' WTA . . . B 2 -3.952 26.21 27.002 1 35.85 ? C2' WTA 701 A 1 HETATM 5 C C2P WTA . . . B 2 -8.584 27.444 21.693 1 30.11 ? C2P WTA 701 A 1 HETATM 6 C C3' WTA . . . B 2 -5.332 25.592 26.819 1 32.58 ? C3' WTA 701 A 1 HETATM 7 C C4 WTA . . . B 2 -3.306 29.098 25.601 1 39.71 ? C4 WTA 701 A 1 HETATM 8 C C4' WTA . . . B 2 -5.198 24.849 25.507 1 30.05 ? C4' WTA 701 A 1 HETATM 9 C C5 WTA . . . B 2 -3.998 30.139 25.003 1 38.31 ? C5 WTA 701 A 1 HETATM 10 C C5' WTA . . . B 2 -6.494 24.632 24.772 1 31.62 ? C5' WTA 701 A 1 HETATM 11 C C6 WTA . . . B 2 -3.514 31.443 25.236 1 37.29 ? C6 WTA 701 A 1 HETATM 12 C C8 WTA . . . B 2 -5.003 28.357 24.439 1 36.39 ? C8 WTA 701 A 1 HETATM 13 N N1 WTA . . . B 2 -2.435 31.577 26.039 1 36.88 ? N1 WTA 701 A 1 HETATM 14 N N3 WTA . . . B 2 -2.231 29.204 26.396 1 40.45 ? N3 WTA 701 A 1 HETATM 15 N N6 WTA . . . B 2 -4.064 32.551 24.72 1 35.04 ? N6 WTA 701 A 1 HETATM 16 N N7 WTA . . . B 2 -5.075 29.655 24.273 1 35.24 ? N7 WTA 701 A 1 HETATM 17 N N9 WTA . . . B 2 -3.952 27.944 25.221 1 37.17 ? N9 WTA 701 A 1 HETATM 18 O O1P WTA . . . B 2 -8.528 22.824 23.311 1 35.48 ? O1P WTA 701 A 1 HETATM 19 O O2' WTA . . . B 2 -3.04 25.247 27.489 1 36.27 ? O2' WTA 701 A 1 HETATM 20 O O2P WTA . . . B 2 -6.928 23.189 21.303 1 34.89 ? O2P WTA 701 A 1 HETATM 21 O O3' WTA . . . B 2 -5.742 24.754 27.894 1 34.62 ? O3' WTA 701 A 1 HETATM 22 O O3P WTA . . . B 2 -8.263 25.133 22.378 1 34.18 ? O3P WTA 701 A 1 HETATM 23 O O4' WTA . . . B 2 -4.297 25.678 24.715 1 38.03 ? O4' WTA 701 A 1 HETATM 24 O O5' WTA . . . B 2 -6.289 24.008 23.519 1 29.1 ? O5' WTA 701 A 1 HETATM 25 P P WTA . . . B 2 -7.511 23.705 22.553 1 32.77 ? P WTA 701 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #