data_7MN5 # _model_server_result.job_id gguwB5SSGgxdNhvaskDeJw _model_server_result.datetime_utc '2024-10-16 14:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1502}' # _entry.id 7MN5 # _exptl.entry_id 7MN5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG C 1 NAG 4 n D NAG 2 C 2 NAG C 2 NAG 4 n D BMA 3 C 3 BMA C 3 BMA 4 n D MAN 4 C 4 MAN C 4 MAN 5 n E NAG 1 D 1 NAG D 1 NAG 5 n E NAG 2 D 2 NAG D 2 NAG 5 n F NAG 1 E 1 NAG E 1 NAG 5 n F NAG 2 E 2 NAG E 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 56 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 156 A CYS 156 1_555 A SG CYS 183 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 186 A CYS 186 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 190 A CYS 190 1_555 A SG CYS 202 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 210 A CYS 210 1_555 A SG CYS 218 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 214 A CYS 214 1_555 A SG CYS 226 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 A SG CYS 227 A CYS 227 1_555 A SG CYS 235 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 A SG CYS 246 A CYS 246 1_555 A SG CYS 255 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 A SG CYS 259 A CYS 259 1_555 A SG CYS 286 A CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 A SG CYS 290 A CYS 290 1_555 A SG CYS 301 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 A SG CYS 305 A CYS 305 1_555 A SG CYS 320 A CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 A SG CYS 331 A CYS 331 1_555 A SG CYS 354 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 A SG CYS 463 A CYS 463 1_555 A SG CYS 493 A CYS 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 A SG CYS 500 A CYS 500 1_555 A SG CYS 509 A CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf15 A SG CYS 504 A CYS 504 1_555 A SG CYS 517 A CYS 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 A SG CYS 520 A CYS 520 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf17 A SG CYS 533 A CYS 533 1_555 A SG CYS 549 A CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf18 A SG CYS 552 A CYS 552 1_555 A SG CYS 565 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf19 A SG CYS 556 A CYS 556 1_555 A SG CYS 573 A CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf20 A SG CYS 576 A CYS 576 1_555 A SG CYS 585 A CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf21 A SG CYS 589 A CYS 589 1_555 A SG CYS 610 A CYS 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf22 A SG CYS 613 A CYS 613 1_555 A SG CYS 621 A CYS 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf23 A SG CYS 617 A CYS 617 1_555 A SG CYS 629 A CYS 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf24 B SG CYS 8 H CYS 182 1_555 B SG CYS 22 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf25 B SG CYS 16 H CYS 190 1_555 B SG CYS 36 H CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf26 B SG CYS 38 H CYS 212 1_555 B SG CYS 47 H CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf27 C SG CYS 26 B CYS 26 1_555 C SG CYS 53 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf28 C SG CYS 162 B CYS 162 1_555 C SG CYS 192 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf29 C SG CYS 195 B CYS 195 1_555 C SG CYS 204 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf30 C SG CYS 199 B CYS 199 1_555 C SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf31 C SG CYS 220 B CYS 220 1_555 C SG CYS 227 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf32 C SG CYS 224 B CYS 224 1_555 C SG CYS 235 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf33 C SG CYS 236 B CYS 236 1_555 C SG CYS 244 B CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf34 C SG CYS 240 B CYS 240 1_555 C SG CYS 252 B CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf35 C SG CYS 255 B CYS 255 1_555 C SG CYS 264 B CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf36 C SG CYS 268 B CYS 268 1_555 C SG CYS 295 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf37 C SG CYS 299 B CYS 299 1_555 C SG CYS 311 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf38 C SG CYS 315 B CYS 315 1_555 C SG CYS 331 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf39 C SG CYS 334 B CYS 334 1_555 C SG CYS 338 B CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf40 C SG CYS 342 B CYS 342 1_555 C SG CYS 367 B CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf41 C SG CYS 475 B CYS 475 1_555 C SG CYS 504 B CYS 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf42 C SG CYS 511 B CYS 511 1_555 C SG CYS 520 B CYS 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf43 C SG CYS 515 B CYS 515 1_555 C SG CYS 528 B CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf44 C SG CYS 531 B CYS 531 1_555 C SG CYS 540 B CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf45 C SG CYS 544 B CYS 544 1_555 C SG CYS 560 B CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf46 C SG CYS 563 B CYS 563 1_555 C SG CYS 576 B CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf47 C SG CYS 567 B CYS 567 1_555 C SG CYS 584 B CYS 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf48 C SG CYS 587 B CYS 587 1_555 C SG CYS 596 B CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf49 C SG CYS 600 B CYS 600 1_555 C SG CYS 623 B CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 250 A ASN 250 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale2 A ND2 ASN 353 A ASN 353 1_555 H C1 NAG . A NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale3 A ND2 ASN 408 A ASN 408 1_555 G C1 NAG . A NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale4 A ND2 ASN 414 A ASN 414 1_555 I C1 NAG . A NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 A ND2 ASN 469 A ASN 469 1_555 E C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale6 C ND2 ASN 187 B ASN 187 1_555 K C1 NAG . B NAG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? covale ? covale7 C ND2 ASN 259 B ASN 259 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 C ND2 ASN 530 B ASN 530 1_555 J C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale9 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale10 D O4 NAG . C NAG 2 1_555 D C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale11 D O3 BMA . C BMA 3 1_555 D C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale12 E O4 NAG . D NAG 1 1_555 E C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale13 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MN5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 NAG A 1 1101 1308 NAG NAG . H 6 NAG A 1 1102 1309 NAG NAG . I 6 NAG A 1 1103 1310 NAG NAG . J 6 NAG B 1 1501 1308 NAG NAG . K 6 NAG B 1 1502 1309 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 6 174.564 197.214 112.412 1 74.97 ? C1 NAG 1502 B 1 HETATM 2 C C2 NAG . . . K 6 175.141 197.941 111.144 1 81.23 ? C2 NAG 1502 B 1 HETATM 3 C C3 NAG . . . K 6 176.44 198.696 111.553 1 82.63 ? C3 NAG 1502 B 1 HETATM 4 C C4 NAG . . . K 6 176.078 199.726 112.661 1 81.81 ? C4 NAG 1502 B 1 HETATM 5 C C5 NAG . . . K 6 175.483 198.952 113.88 1 81.42 ? C5 NAG 1502 B 1 HETATM 6 C C6 NAG . . . K 6 175.049 199.904 114.996 1 78.22 ? C6 NAG 1502 B 1 HETATM 7 C C7 NAG . . . K 6 175.144 197.094 108.844 1 83.44 ? C7 NAG 1502 B 1 HETATM 8 C C8 NAG . . . K 6 175.425 196.013 107.832 1 80.47 ? C8 NAG 1502 B 1 HETATM 9 N N2 NAG . . . K 6 175.449 196.914 110.129 1 82.69 ? N2 NAG 1502 B 1 HETATM 10 O O3 NAG . . . K 6 176.972 199.396 110.409 1 80.28 ? O3 NAG 1502 B 1 HETATM 11 O O4 NAG . . . K 6 177.26 200.421 113.066 1 81.59 ? O4 NAG 1502 B 1 HETATM 12 O O5 NAG . . . K 6 174.28 198.204 113.449 1 72.22 ? O5 NAG 1502 B 1 HETATM 13 O O6 NAG . . . K 6 175.853 201.088 115.008 1 76.73 ? O6 NAG 1502 B 1 HETATM 14 O O7 NAG . . . K 6 174.617 198.156 108.474 1 80.52 ? O7 NAG 1502 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #