data_7MNV # _model_server_result.job_id wurfxkggZVSIY2k6jijcug _model_server_result.datetime_utc '2024-12-26 23:44:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7MNV # _exptl.entry_id 7MNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MNV _cell.length_a 60.47 _cell.length_b 80.47 _cell.length_c 58.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 44 A THR 24 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 C O3B GDP . A GDP 301 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc3 E MG MG . A MG 303 1_555 G O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc4 E MG MG . A MG 303 1_555 G O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 E MG MG . A MG 303 1_555 G O HOH . A HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 E MG MG . A MG 303 1_555 G O HOH . A HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc7 B SG CYS 19 B CYS 1787 1_555 F ZN ZN . B ZN 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc8 B SG CYS 22 B CYS 1790 1_555 F ZN ZN . B ZN 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc9 B SG CYS 33 B CYS 1801 1_555 F ZN ZN . B ZN 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc10 B SG CYS 36 B CYS 1804 1_555 F ZN ZN . B ZN 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 7MNV _atom_sites.fract_transf_matrix[1][1] 0.016537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP A 1 301 301 GDP GDP . D 4 GOL A 1 302 302 GOL GOL . E 5 MG A 1 303 401 MG MG . F 6 ZN B 1 1901 1901 ZN ZN . G 7 HOH A 1 401 691 HOH HOH . G 7 HOH A 2 402 665 HOH HOH . G 7 HOH A 3 403 693 HOH HOH . G 7 HOH A 4 404 641 HOH HOH . G 7 HOH A 5 405 668 HOH HOH . G 7 HOH A 6 406 525 HOH HOH . G 7 HOH A 7 407 628 HOH HOH . G 7 HOH A 8 408 557 HOH HOH . G 7 HOH A 9 409 663 HOH HOH . G 7 HOH A 10 410 667 HOH HOH . G 7 HOH A 11 411 620 HOH HOH . G 7 HOH A 12 412 569 HOH HOH . G 7 HOH A 13 413 553 HOH HOH . G 7 HOH A 14 414 565 HOH HOH . G 7 HOH A 15 415 594 HOH HOH . G 7 HOH A 16 416 501 HOH HOH . G 7 HOH A 17 417 561 HOH HOH . G 7 HOH A 18 418 642 HOH HOH . G 7 HOH A 19 419 664 HOH HOH . G 7 HOH A 20 420 562 HOH HOH . G 7 HOH A 21 421 682 HOH HOH . G 7 HOH A 22 422 544 HOH HOH . G 7 HOH A 23 423 537 HOH HOH . G 7 HOH A 24 424 590 HOH HOH . G 7 HOH A 25 425 545 HOH HOH . G 7 HOH A 26 426 519 HOH HOH . G 7 HOH A 27 427 572 HOH HOH . G 7 HOH A 28 428 511 HOH HOH . G 7 HOH A 29 429 611 HOH HOH . G 7 HOH A 30 430 678 HOH HOH . G 7 HOH A 31 431 584 HOH HOH . G 7 HOH A 32 432 633 HOH HOH . G 7 HOH A 33 433 592 HOH HOH . G 7 HOH A 34 434 526 HOH HOH . G 7 HOH A 35 435 518 HOH HOH . G 7 HOH A 36 436 521 HOH HOH . G 7 HOH A 37 437 574 HOH HOH . G 7 HOH A 38 438 583 HOH HOH . G 7 HOH A 39 439 618 HOH HOH . G 7 HOH A 40 440 533 HOH HOH . G 7 HOH A 41 441 580 HOH HOH . G 7 HOH A 42 442 585 HOH HOH . G 7 HOH A 43 443 577 HOH HOH . G 7 HOH A 44 444 543 HOH HOH . G 7 HOH A 45 445 532 HOH HOH . G 7 HOH A 46 446 513 HOH HOH . G 7 HOH A 47 447 593 HOH HOH . G 7 HOH A 48 448 520 HOH HOH . G 7 HOH A 49 449 502 HOH HOH . G 7 HOH A 50 450 635 HOH HOH . G 7 HOH A 51 451 555 HOH HOH . G 7 HOH A 52 452 550 HOH HOH . G 7 HOH A 53 453 680 HOH HOH . G 7 HOH A 54 454 612 HOH HOH . G 7 HOH A 55 455 558 HOH HOH . G 7 HOH A 56 456 638 HOH HOH . G 7 HOH A 57 457 514 HOH HOH . G 7 HOH A 58 458 527 HOH HOH . G 7 HOH A 59 459 541 HOH HOH . G 7 HOH A 60 460 598 HOH HOH . G 7 HOH A 61 461 575 HOH HOH . G 7 HOH A 62 462 666 HOH HOH . G 7 HOH A 63 463 613 HOH HOH . G 7 HOH A 64 464 504 HOH HOH . G 7 HOH A 65 465 626 HOH HOH . G 7 HOH A 66 466 568 HOH HOH . G 7 HOH A 67 467 634 HOH HOH . G 7 HOH A 68 468 603 HOH HOH . G 7 HOH A 69 469 529 HOH HOH . G 7 HOH A 70 470 535 HOH HOH . G 7 HOH A 71 471 510 HOH HOH . G 7 HOH A 72 472 602 HOH HOH . G 7 HOH A 73 473 627 HOH HOH . G 7 HOH A 74 474 650 HOH HOH . G 7 HOH A 75 475 576 HOH HOH . G 7 HOH A 76 476 563 HOH HOH . G 7 HOH A 77 477 547 HOH HOH . G 7 HOH A 78 478 503 HOH HOH . G 7 HOH A 79 479 528 HOH HOH . G 7 HOH A 80 480 662 HOH HOH . G 7 HOH A 81 481 512 HOH HOH . G 7 HOH A 82 482 534 HOH HOH . G 7 HOH A 83 483 578 HOH HOH . G 7 HOH A 84 484 674 HOH HOH . G 7 HOH A 85 485 687 HOH HOH . G 7 HOH A 86 486 517 HOH HOH . G 7 HOH A 87 487 549 HOH HOH . G 7 HOH A 88 488 516 HOH HOH . G 7 HOH A 89 489 640 HOH HOH . G 7 HOH A 90 490 639 HOH HOH . G 7 HOH A 91 491 548 HOH HOH . G 7 HOH A 92 492 539 HOH HOH . G 7 HOH A 93 493 566 HOH HOH . G 7 HOH A 94 494 571 HOH HOH . G 7 HOH A 95 495 523 HOH HOH . G 7 HOH A 96 496 622 HOH HOH . G 7 HOH A 97 497 657 HOH HOH . G 7 HOH A 98 498 671 HOH HOH . G 7 HOH A 99 499 604 HOH HOH . G 7 HOH A 100 500 606 HOH HOH . G 7 HOH A 101 501 614 HOH HOH . G 7 HOH A 102 502 582 HOH HOH . G 7 HOH A 103 503 625 HOH HOH . G 7 HOH A 104 504 637 HOH HOH . G 7 HOH A 105 505 579 HOH HOH . G 7 HOH A 106 506 554 HOH HOH . G 7 HOH A 107 507 530 HOH HOH . G 7 HOH A 108 508 538 HOH HOH . G 7 HOH A 109 509 631 HOH HOH . G 7 HOH A 110 510 588 HOH HOH . G 7 HOH A 111 511 647 HOH HOH . G 7 HOH A 112 512 608 HOH HOH . G 7 HOH A 113 513 629 HOH HOH . G 7 HOH A 114 514 595 HOH HOH . G 7 HOH A 115 515 616 HOH HOH . G 7 HOH A 116 516 591 HOH HOH . G 7 HOH A 117 517 589 HOH HOH . G 7 HOH A 118 518 506 HOH HOH . G 7 HOH A 119 519 675 HOH HOH . G 7 HOH A 120 520 609 HOH HOH . G 7 HOH A 121 521 685 HOH HOH . G 7 HOH A 122 522 624 HOH HOH . G 7 HOH A 123 523 670 HOH HOH . G 7 HOH A 124 524 522 HOH HOH . G 7 HOH A 125 525 546 HOH HOH . G 7 HOH A 126 526 684 HOH HOH . G 7 HOH A 127 527 597 HOH HOH . G 7 HOH A 128 528 600 HOH HOH . G 7 HOH A 129 529 673 HOH HOH . G 7 HOH A 130 530 649 HOH HOH . G 7 HOH A 131 531 683 HOH HOH . G 7 HOH A 132 532 515 HOH HOH . G 7 HOH A 133 533 643 HOH HOH . G 7 HOH A 134 534 692 HOH HOH . G 7 HOH A 135 535 505 HOH HOH . G 7 HOH A 136 536 688 HOH HOH . G 7 HOH A 137 537 610 HOH HOH . G 7 HOH A 138 538 697 HOH HOH . G 7 HOH A 139 539 659 HOH HOH . G 7 HOH A 140 540 699 HOH HOH . G 7 HOH A 141 541 646 HOH HOH . G 7 HOH A 142 542 540 HOH HOH . G 7 HOH A 143 543 551 HOH HOH . G 7 HOH A 144 544 700 HOH HOH . G 7 HOH A 145 545 694 HOH HOH . G 7 HOH A 146 546 636 HOH HOH . G 7 HOH A 147 547 651 HOH HOH . G 7 HOH A 148 548 623 HOH HOH . G 7 HOH A 149 549 531 HOH HOH . G 7 HOH A 150 550 581 HOH HOH . G 7 HOH A 151 551 681 HOH HOH . G 7 HOH A 152 552 607 HOH HOH . G 7 HOH A 153 553 596 HOH HOH . G 7 HOH A 154 554 552 HOH HOH . G 7 HOH A 155 555 542 HOH HOH . G 7 HOH A 156 556 644 HOH HOH . G 7 HOH A 157 557 679 HOH HOH . G 7 HOH A 158 558 689 HOH HOH . G 7 HOH A 159 559 617 HOH HOH . G 7 HOH A 160 560 556 HOH HOH . G 7 HOH A 161 561 570 HOH HOH . G 7 HOH A 162 562 645 HOH HOH . G 7 HOH A 163 563 690 HOH HOH . G 7 HOH A 164 564 632 HOH HOH . G 7 HOH A 165 565 698 HOH HOH . G 7 HOH A 166 566 648 HOH HOH . G 7 HOH A 167 567 653 HOH HOH . G 7 HOH A 168 568 619 HOH HOH . G 7 HOH A 169 569 652 HOH HOH . G 7 HOH A 170 570 587 HOH HOH . G 7 HOH A 171 571 658 HOH HOH . G 7 HOH A 172 572 672 HOH HOH . G 7 HOH A 173 573 630 HOH HOH . G 7 HOH A 174 574 695 HOH HOH . G 7 HOH A 175 575 621 HOH HOH . G 7 HOH A 176 576 524 HOH HOH . G 7 HOH A 177 577 536 HOH HOH . H 7 HOH B 1 2001 654 HOH HOH . H 7 HOH B 2 2002 669 HOH HOH . H 7 HOH B 3 2003 560 HOH HOH . H 7 HOH B 4 2004 605 HOH HOH . H 7 HOH B 5 2005 686 HOH HOH . H 7 HOH B 6 2006 573 HOH HOH . H 7 HOH B 7 2007 661 HOH HOH . H 7 HOH B 8 2008 655 HOH HOH . H 7 HOH B 9 2009 509 HOH HOH . H 7 HOH B 10 2010 567 HOH HOH . H 7 HOH B 11 2011 508 HOH HOH . H 7 HOH B 12 2012 599 HOH HOH . H 7 HOH B 13 2013 507 HOH HOH . H 7 HOH B 14 2014 601 HOH HOH . H 7 HOH B 15 2015 660 HOH HOH . H 7 HOH B 16 2016 559 HOH HOH . H 7 HOH B 17 2017 656 HOH HOH . H 7 HOH B 18 2018 564 HOH HOH . H 7 HOH B 19 2019 586 HOH HOH . H 7 HOH B 20 2020 615 HOH HOH . H 7 HOH B 21 2021 677 HOH HOH . H 7 HOH B 22 2022 676 HOH HOH . H 7 HOH B 23 2023 696 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -3.57 34.193 25.357 1 67.06 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 4 -3.659 33.412 26.511 1 73.88 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 4 -2.606 33.479 24.41 1 62.06 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 4 -2.119 34.35 23.434 1 64.25 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 4 -1.478 32.905 25.28 1 56 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 4 -1.204 33.849 26.273 1 70.98 ? O3 GOL 302 A 1 HETATM 7 H H11 GOL . . . D 4 -3.248 35.091 25.532 1 80.54 ? H11 GOL 302 A 1 HETATM 8 H H12 GOL . . . D 4 -4.434 34.3 24.93 1 80.54 ? H12 GOL 302 A 1 HETATM 9 H H2 GOL . . . D 4 -3.064 32.772 23.929 1 74.53 ? H2 GOL 302 A 1 HETATM 10 H HO2 GOL . . . D 4 -1.779 33.881 22.812 1 77.16 ? HO2 GOL 302 A 1 HETATM 11 H H31 GOL . . . D 4 -0.716 32.695 24.718 1 67.26 ? H31 GOL 302 A 1 HETATM 12 H H32 GOL . . . D 4 -1.759 32.056 25.656 1 67.26 ? H32 GOL 302 A 1 HETATM 13 H HO3 GOL . . . D 4 -0.698 33.468 26.839 1 85.24 ? HO3 GOL 302 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 57 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #