data_7MOR # _model_server_result.job_id XtyKUGtDEe8VvmT22hwjWQ _model_server_result.datetime_utc '2024-11-17 00:24:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mor # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7MOR # _exptl.entry_id 7MOR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 738.042 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Methylenebisphosphonate inositol pentakisphosphate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MOR _cell.length_a 169.681 _cell.length_b 187.398 _cell.length_c 90.926 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C7 H21 O26 P7' _chem_comp.formula_weight 738.042 _chem_comp.id 5A3 _chem_comp.mon_nstd_flag . _chem_comp.name 'Methylenebisphosphonate inositol pentakisphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '{[(R)-hydroxy{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O42 PA2 5A3 doub 1 n n O31 PA1 5A3 doub 2 n n O32 PA2 5A3 sing 3 n n PA2 O22 5A3 sing 4 n n PA2 O12 5A3 sing 5 n n O21 PA1 5A3 sing 6 n n PA1 O11 5A3 sing 7 n n PA1 O41 5A3 sing 8 n n O11 C1 5A3 sing 9 n n O12 C2 5A3 sing 10 n n C2 C1 5A3 sing 11 n n C2 C3 5A3 sing 12 n n C1 C6 5A3 sing 13 n n O46 PA6 5A3 doub 14 n n O33 PA3 5A3 doub 15 n n O43 PA3 5A3 sing 16 n n O13 PA3 5A3 sing 17 n n O13 C3 5A3 sing 18 n n PA3 O23 5A3 sing 19 n n C3 C4 5A3 sing 20 n n C6 O16 5A3 sing 21 n n C6 C5 5A3 sing 22 n n PA6 O36 5A3 sing 23 n n PA6 O16 5A3 sing 24 n n PA6 O26 5A3 sing 25 n n C4 C5 5A3 sing 26 n n C4 O14 5A3 sing 27 n n C5 O15 5A3 sing 28 n n O15 PA5 5A3 sing 29 n n O14 PA4 5A3 sing 30 n n O34 PA4 5A3 doub 31 n n O24 PA4 5A3 sing 32 n n PA4 O44 5A3 sing 33 n n PA5 CB5 5A3 sing 34 n n PA5 O25 5A3 doub 35 n n PA5 O35 5A3 sing 36 n n CB5 PB5 5A3 sing 37 n n O55 PB5 5A3 doub 38 n n PB5 O75 5A3 sing 39 n n PB5 O65 5A3 sing 40 n n C2 H1 5A3 sing 41 n n C1 H2 5A3 sing 42 n n C4 H3 5A3 sing 43 n n C5 H4 5A3 sing 44 n n C6 H5 5A3 sing 45 n n C3 H6 5A3 sing 46 n n O75 H7 5A3 sing 47 n n O65 H8 5A3 sing 48 n n CB5 H9 5A3 sing 49 n n CB5 H10 5A3 sing 50 n n O35 H11 5A3 sing 51 n n O36 H12 5A3 sing 52 n n O26 H13 5A3 sing 53 n n O41 H14 5A3 sing 54 n n O21 H15 5A3 sing 55 n n O22 H16 5A3 sing 56 n n O32 H17 5A3 sing 57 n n O43 H18 5A3 sing 58 n n O23 H19 5A3 sing 59 n n O24 H20 5A3 sing 60 n n O44 H21 5A3 sing 61 n n # _atom_sites.entry_id 7MOR _atom_sites.fract_transf_matrix[1][1] 0.005893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 5A3 A 1 501 401 5A3 5A3 . F 2 5A3 B 1 501 401 5A3 5A3 . G 2 5A3 C 1 501 401 5A3 5A3 . H 2 5A3 C 1 502 501 5A3 5A3 . I 2 5A3 D 1 501 401 5A3 5A3 . J 2 5A3 D 1 502 501 5A3 5A3 . K 3 HOH A 1 601 30 HOH HOH . K 3 HOH A 2 602 24 HOH HOH . K 3 HOH A 3 603 31 HOH HOH . K 3 HOH A 4 604 16 HOH HOH . K 3 HOH A 5 605 15 HOH HOH . K 3 HOH A 6 606 4 HOH HOH . K 3 HOH A 7 607 23 HOH HOH . K 3 HOH A 8 608 19 HOH HOH . K 3 HOH A 9 609 32 HOH HOH . L 3 HOH B 1 601 7 HOH HOH . L 3 HOH B 2 602 3 HOH HOH . L 3 HOH B 3 603 17 HOH HOH . L 3 HOH B 4 604 25 HOH HOH . L 3 HOH B 5 605 5 HOH HOH . L 3 HOH B 6 606 1 HOH HOH . L 3 HOH B 7 607 2 HOH HOH . M 3 HOH C 1 601 13 HOH HOH . M 3 HOH C 2 602 11 HOH HOH . M 3 HOH C 3 603 12 HOH HOH . M 3 HOH C 4 604 21 HOH HOH . M 3 HOH C 5 605 20 HOH HOH . M 3 HOH C 6 606 8 HOH HOH . N 3 HOH D 1 601 14 HOH HOH . N 3 HOH D 2 602 9 HOH HOH . N 3 HOH D 3 603 29 HOH HOH . N 3 HOH D 4 604 27 HOH HOH . N 3 HOH D 5 605 26 HOH HOH . N 3 HOH D 6 606 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O31 5A3 . . . E 2 113.967 42.991 -7.312 0.75 158.2 ? O31 5A3 501 A 1 HETATM 2 C C2 5A3 . . . E 2 109.88 43.47 -9.735 0.75 168.13 ? C2 5A3 501 A 1 HETATM 3 C C1 5A3 . . . E 2 111.342 43.737 -10.038 0.75 172.16 ? C1 5A3 501 A 1 HETATM 4 C C4 5A3 . . . E 2 109.319 43.702 -12.146 0.75 176.3 ? C4 5A3 501 A 1 HETATM 5 C C5 5A3 . . . E 2 110.794 43.861 -12.486 0.75 180.38 ? C5 5A3 501 A 1 HETATM 6 C C6 5A3 . . . E 2 111.69 43.234 -11.428 0.75 178.11 ? C6 5A3 501 A 1 HETATM 7 C C3 5A3 . . . E 2 109.019 44.205 -10.744 0.75 169.8 ? C3 5A3 501 A 1 HETATM 8 O O11 5A3 . . . E 2 112.165 43.03 -9.054 0.75 168.82 ? O11 5A3 501 A 1 HETATM 9 O O75 5A3 . . . E 2 112.715 47.51 -13.352 0.75 175.37 ? O75 5A3 501 A 1 HETATM 10 P PB5 5A3 . . . E 2 112.396 46.612 -14.517 0.75 179.44 ? PB5 5A3 501 A 1 HETATM 11 O O55 5A3 . . . E 2 113.077 47.065 -15.781 0.75 174.38 ? O55 5A3 501 A 1 HETATM 12 O O65 5A3 . . . E 2 110.913 46.441 -14.706 0.75 185.14 ? O65 5A3 501 A 1 HETATM 13 C CB5 5A3 . . . E 2 113.076 44.991 -14.116 0.75 182.48 ? CB5 5A3 501 A 1 HETATM 14 P PA5 5A3 . . . E 2 112.165 43.583 -14.813 0.75 187.09 ? PA5 5A3 501 A 1 HETATM 15 O O25 5A3 . . . E 2 113.101 42.43 -14.968 0.75 181.52 ? O25 5A3 501 A 1 HETATM 16 O O35 5A3 . . . E 2 111.51 44.001 -16.089 0.75 187 ? O35 5A3 501 A 1 HETATM 17 O O15 5A3 . . . E 2 111.041 43.182 -13.762 0.75 186.47 ? O15 5A3 501 A 1 HETATM 18 O O16 5A3 . . . E 2 113.079 43.602 -11.713 0.75 179.61 ? O16 5A3 501 A 1 HETATM 19 P PA6 5A3 . . . E 2 114.284 42.526 -11.736 0.75 179.71 ? PA6 5A3 501 A 1 HETATM 20 O O46 5A3 . . . E 2 115.387 43.137 -12.58 0.75 174.95 ? O46 5A3 501 A 1 HETATM 21 O O36 5A3 . . . E 2 114.712 42.325 -10.294 0.75 174.71 ? O36 5A3 501 A 1 HETATM 22 O O26 5A3 . . . E 2 113.727 41.258 -12.354 0.75 173.82 ? O26 5A3 501 A 1 HETATM 23 P PA1 5A3 . . . E 2 112.725 43.757 -7.726 0.75 162.44 ? PA1 5A3 501 A 1 HETATM 24 O O41 5A3 . . . E 2 111.619 43.674 -6.69 0.75 155.14 ? O41 5A3 501 A 1 HETATM 25 O O21 5A3 . . . E 2 113.038 45.19 -8.113 0.75 159.88 ? O21 5A3 501 A 1 HETATM 26 O O12 5A3 . . . E 2 109.635 42.031 -9.878 0.75 159.77 ? O12 5A3 501 A 1 HETATM 27 P PA2 5A3 . . . E 2 109.033 41.087 -8.715 0.75 152.51 ? PA2 5A3 501 A 1 HETATM 28 O O42 5A3 . . . E 2 109.704 39.734 -8.87 0.75 136.21 ? O42 5A3 501 A 1 HETATM 29 O O22 5A3 . . . E 2 107.536 41.012 -8.955 0.75 150.32 ? O22 5A3 501 A 1 HETATM 30 O O32 5A3 . . . E 2 109.37 41.744 -7.389 0.75 147.42 ? O32 5A3 501 A 1 HETATM 31 O O13 5A3 . . . E 2 107.61 43.959 -10.43 0.75 164.73 ? O13 5A3 501 A 1 HETATM 32 P PA3 5A3 . . . E 2 106.799 44.918 -9.413 0.75 154.79 ? PA3 5A3 501 A 1 HETATM 33 O O43 5A3 . . . E 2 105.509 44.2 -9.067 0.75 152.11 ? O43 5A3 501 A 1 HETATM 34 O O33 5A3 . . . E 2 106.552 46.216 -10.157 0.75 148.7 ? O33 5A3 501 A 1 HETATM 35 O O23 5A3 . . . E 2 107.687 45.117 -8.199 0.75 152.13 ? O23 5A3 501 A 1 HETATM 36 O O14 5A3 . . . E 2 108.531 44.483 -13.102 0.75 176.26 ? O14 5A3 501 A 1 HETATM 37 P PA4 5A3 . . . E 2 107.421 43.805 -14.061 0.75 171.91 ? PA4 5A3 501 A 1 HETATM 38 O O24 5A3 . . . E 2 106.563 42.923 -13.174 0.75 164.29 ? O24 5A3 501 A 1 HETATM 39 O O44 5A3 . . . E 2 108.177 43.005 -15.106 0.75 161.61 ? O44 5A3 501 A 1 HETATM 40 O O34 5A3 . . . E 2 106.627 44.943 -14.676 0.75 169.02 ? O34 5A3 501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #