data_7MP0
#
_model_server_result.job_id            ew9C7HiR54mAypOjtr_V1Q 
_model_server_result.datetime_utc      '2024-11-17 00:39:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    7MP0 
#
_exptl.entry_id    7MP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              740.015 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MP0 
_cell.length_a            168.995 
_cell.length_b            186.822 
_cell.length_c            90.539 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C6 H19 O27 P7' 
_chem_comp.formula_weight    740.015 
_chem_comp.id                I7P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1D-myo-inositol 5-diphosphate 1,2,3,4,6-pentakisphosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C1 I7P sing 167 n n 
C2 C1 I7P sing 168 n n 
C1 C6 I7P sing 169 n n 
C1 H1 I7P sing 170 n n 
O12 C2 I7P sing 171 n n 
C2 C3 I7P sing 172 n n 
C2 H2 I7P sing 173 n n 
O13 C3 I7P sing 174 n n 
C3 C4 I7P sing 175 n n 
C3 H3 I7P sing 176 n n 
C4 C5 I7P sing 177 n n 
C4 O14 I7P sing 178 n n 
C4 H4 I7P sing 179 n n 
C6 C5 I7P sing 180 n n 
C5 O15 I7P sing 181 n n 
C5 H5 I7P sing 182 n n 
C6 O16 I7P sing 183 n n 
C6 H6 I7P sing 184 n n 
PA1 O11 I7P sing 185 n n 
PA2 O12 I7P sing 186 n n 
O13 PA3 I7P sing 187 n n 
O14 PA4 I7P sing 188 n n 
O15 PA5 I7P sing 189 n n 
PA6 O16 I7P sing 190 n n 
PA1 O21 I7P sing 191 n n 
O21 HO21 I7P sing 192 n n 
O22 PA2 I7P sing 193 n n 
O22 HO22 I7P sing 194 n n 
PA3 O23 I7P sing 195 n n 
O23 HO23 I7P sing 196 n n 
O24 PA4 I7P sing 197 n n 
O24 HO24 I7P sing 198 n n 
PA5 O25 I7P doub 199 n n 
PA6 O26 I7P sing 200 n n 
O26 HO26 I7P sing 201 n n 
O31 PA1 I7P sing 202 n n 
O31 HO31 I7P sing 203 n n 
O32 PA2 I7P doub 204 n n 
O33 PA3 I7P doub 205 n n 
O34 PA4 I7P doub 206 n n 
PA5 O35 I7P sing 207 n n 
O35 HO35 I7P sing 208 n n 
PA6 O36 I7P sing 209 n n 
O36 HO36 I7P sing 210 n n 
O41 PA1 I7P doub 211 n n 
O42 PA2 I7P sing 212 n n 
O42 HO42 I7P sing 213 n n 
O43 PA3 I7P sing 214 n n 
O43 HO43 I7P sing 215 n n 
PA4 O44 I7P sing 216 n n 
O44 HO44 I7P sing 217 n n 
O45 PA5 I7P sing 218 n n 
O45 PB5 I7P sing 219 n n 
O46 PA6 I7P doub 220 n n 
PB5 O55 I7P sing 221 n n 
O55 HO55 I7P sing 222 n n 
O65 PB5 I7P sing 223 n n 
O65 HO65 I7P sing 224 n n 
O75 PB5 I7P doub 225 n n 
#
_atom_sites.entry_id                     7MP0 
_atom_sites.fract_transf_matrix[1][1]    0.005917 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005353 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011045 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ETX A 1 501 501 ETX ETX . 
F 3 I7P A 1 502 502 I7P I7P . 
G 3 I7P B 1 501 501 I7P I7P . 
H 3 I7P B 1 502 502 I7P I7P . 
I 3 I7P C 1 501 501 I7P I7P . 
J 3 I7P D 1 501 501 I7P I7P . 
K 4 HOH A 1 601 601 HOH HOH . 
K 4 HOH A 2 602 602 HOH HOH . 
K 4 HOH A 3 603 603 HOH HOH . 
K 4 HOH A 4 604 606 HOH HOH . 
K 4 HOH A 5 605 604 HOH HOH . 
K 4 HOH A 6 606 607 HOH HOH . 
K 4 HOH A 7 607 605 HOH HOH . 
K 4 HOH A 8 608 608 HOH HOH . 
K 4 HOH A 9 609 610 HOH HOH . 
K 4 HOH A 10 610 614 HOH HOH . 
K 4 HOH A 11 611 613 HOH HOH . 
K 4 HOH A 12 612 611 HOH HOH . 
K 4 HOH A 13 613 609 HOH HOH . 
K 4 HOH A 14 614 612 HOH HOH . 
K 4 HOH A 15 615 615 HOH HOH . 
K 4 HOH A 16 616 616 HOH HOH . 
K 4 HOH A 17 617 617 HOH HOH . 
K 4 HOH A 18 618 620 HOH HOH . 
K 4 HOH A 19 619 619 HOH HOH . 
K 4 HOH A 20 620 618 HOH HOH . 
L 4 HOH B 1 601 601 HOH HOH . 
L 4 HOH B 2 602 602 HOH HOH . 
L 4 HOH B 3 603 603 HOH HOH . 
L 4 HOH B 4 604 604 HOH HOH . 
L 4 HOH B 5 605 605 HOH HOH . 
L 4 HOH B 6 606 606 HOH HOH . 
L 4 HOH B 7 607 607 HOH HOH . 
L 4 HOH B 8 608 608 HOH HOH . 
L 4 HOH B 9 609 609 HOH HOH . 
L 4 HOH B 10 610 610 HOH HOH . 
L 4 HOH B 11 611 611 HOH HOH . 
M 4 HOH C 1 601 601 HOH HOH . 
M 4 HOH C 2 602 603 HOH HOH . 
M 4 HOH C 3 603 605 HOH HOH . 
M 4 HOH C 4 604 604 HOH HOH . 
M 4 HOH C 5 605 602 HOH HOH . 
M 4 HOH C 6 606 607 HOH HOH . 
M 4 HOH C 7 607 606 HOH HOH . 
M 4 HOH C 8 608 608 HOH HOH . 
M 4 HOH C 9 609 610 HOH HOH . 
M 4 HOH C 10 610 609 HOH HOH . 
M 4 HOH C 11 611 612 HOH HOH . 
M 4 HOH C 12 612 611 HOH HOH . 
M 4 HOH C 13 613 613 HOH HOH . 
M 4 HOH C 14 614 614 HOH HOH . 
M 4 HOH C 15 615 616 HOH HOH . 
M 4 HOH C 16 616 615 HOH HOH . 
N 4 HOH D 1 601 601 HOH HOH . 
N 4 HOH D 2 602 602 HOH HOH . 
N 4 HOH D 3 603 603 HOH HOH . 
N 4 HOH D 4 604 604 HOH HOH . 
N 4 HOH D 5 605 605 HOH HOH . 
N 4 HOH D 6 606 606 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I7P . . . F 3 74.745 53.904 -7.272 1 209.04 ? C1 I7P 502 A 1 
HETATM 2 C C2 I7P . . . F 3 73.797 53.059 -8.105 1 209.94 ? C2 I7P 502 A 1 
HETATM 3 C C3 I7P . . . F 3 73.706 53.662 -9.498 1 211.88 ? C3 I7P 502 A 1 
HETATM 4 C C4 I7P . . . F 3 75.082 53.611 -10.147 1 217.6 ? C4 I7P 502 A 1 
HETATM 5 C C5 I7P . . . F 3 76.057 54.435 -9.31 1 218.65 ? C5 I7P 502 A 1 
HETATM 6 C C6 I7P . . . F 3 76.13 53.85 -7.903 1 212.58 ? C6 I7P 502 A 1 
HETATM 7 O O11 I7P . . . F 3 74.777 53.405 -5.917 1 204.43 ? O11 I7P 502 A 1 
HETATM 8 O O12 I7P . . . F 3 74.379 51.734 -8.164 1 208.37 ? O12 I7P 502 A 1 
HETATM 9 O O13 I7P . . . F 3 72.726 52.947 -10.284 1 206.03 ? O13 I7P 502 A 1 
HETATM 10 O O14 I7P . . . F 3 74.99 54.119 -11.496 1 215.36 ? O14 I7P 502 A 1 
HETATM 11 O O15 I7P . . . F 3 77.367 54.408 -9.919 1 228.63 ? O15 I7P 502 A 1 
HETATM 12 O O16 I7P . . . F 3 77.066 54.578 -7.079 1 205.12 ? O16 I7P 502 A 1 
HETATM 13 O O21 I7P . . . F 3 74.054 55.465 -4.593 1 190.11 ? O21 I7P 502 A 1 
HETATM 14 O O22 I7P . . . F 3 74.546 50.388 -10.351 1 177.8 -1 O22 I7P 502 A 1 
HETATM 15 O O23 I7P . . . F 3 71.04 53.237 -12.182 1 184.84 ? O23 I7P 502 A 1 
HETATM 16 O O24 I7P . . . F 3 75.8 53.734 -13.859 1 207.75 ? O24 I7P 502 A 1 
HETATM 17 O O25 I7P . . . F 3 77.406 56.973 -10.482 1 222.4 -1 O25 I7P 502 A 1 
HETATM 18 O O26 I7P . . . F 3 78.339 55.042 -4.928 1 195.07 ? O26 I7P 502 A 1 
HETATM 19 O O31 I7P . . . F 3 72.372 53.755 -5.146 1 192.04 -1 O31 I7P 502 A 1 
HETATM 20 O O32 I7P . . . F 3 74.288 49.222 -8.157 1 184.39 ? O32 I7P 502 A 1 
HETATM 21 O O33 I7P . . . F 3 70.156 52.733 -9.879 1 180.76 -1 O33 I7P 502 A 1 
HETATM 22 O O34 I7P . . . F 3 74.753 51.808 -12.63 1 190.67 -1 O34 I7P 502 A 1 
HETATM 23 O O35 I7P . . . F 3 78.848 55.367 -11.786 1 236.36 ? O35 I7P 502 A 1 
HETATM 24 O O36 I7P . . . F 3 77.468 52.758 -5.317 1 186.57 -1 O36 I7P 502 A 1 
HETATM 25 O O41 I7P . . . F 3 74.12 53.233 -3.396 1 180.75 -1 O41 I7P 502 A 1 
HETATM 26 O O42 I7P . . . F 3 72.367 50.53 -9.124 1 199.36 -1 O42 I7P 502 A 1 
HETATM 27 O O43 I7P . . . F 3 71.17 54.973 -10.42 1 186.92 -1 O43 I7P 502 A 1 
HETATM 28 O O44 I7P . . . F 3 73.361 53.764 -13.414 1 196.99 -1 O44 I7P 502 A 1 
HETATM 29 O O45 I7P . . . F 3 79.437 55.887 -9.402 1 233.82 ? O45 I7P 502 A 1 
HETATM 30 O O46 I7P . . . F 3 79.438 53.574 -6.651 1 187.7 -1 O46 I7P 502 A 1 
HETATM 31 O O55 I7P . . . F 3 81.681 56.945 -9.316 1 215.35 -1 O55 I7P 502 A 1 
HETATM 32 O O65 I7P . . . F 3 81.257 54.785 -8.122 1 210.48 -1 O65 I7P 502 A 1 
HETATM 33 O O75 I7P . . . F 3 81.382 54.813 -10.653 1 224.92 ? O75 I7P 502 A 1 
HETATM 34 P PA1 I7P . . . F 3 73.818 53.951 -4.676 1 194.7 ? PA1 I7P 502 A 1 
HETATM 35 P PA2 I7P . . . F 3 73.884 50.403 -8.96 1 192.95 ? PA2 I7P 502 A 1 
HETATM 36 P PA3 I7P . . . F 3 71.198 53.457 -10.67 1 191.9 ? PA3 I7P 502 A 1 
HETATM 37 P PA4 I7P . . . F 3 74.719 53.286 -12.871 1 204.77 ? PA4 I7P 502 A 1 
HETATM 38 P PA5 I7P . . . F 3 78.233 55.744 -10.437 1 235.23 ? PA5 I7P 502 A 1 
HETATM 39 P PA6 I7P . . . F 3 78.149 53.96 -5.995 1 197.43 ? PA6 I7P 502 A 1 
HETATM 40 P PB5 I7P . . . F 3 81.004 55.568 -9.423 1 223.93 ? PB5 I7P 502 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           395 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           40 
#