data_7MP1 # _model_server_result.job_id 4sXj3N9y8i8I3OOnHX3cMw _model_server_result.datetime_utc '2024-11-25 01:34:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7MP1 # _exptl.entry_id 7MP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 816.049 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MP1 _cell.length_a 168.467 _cell.length_b 187.229 _cell.length_c 90.743 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C8 H24 O28 P8' _chem_comp.formula_weight 816.049 _chem_comp.id 4WZ _chem_comp.mon_nstd_flag . _chem_comp.name '{[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O32 PA2 4WZ doub 1 n n O71 PB1 4WZ doub 2 n n O42 PA2 4WZ sing 3 n n O22 PA2 4WZ sing 4 n n PA2 O12 4WZ sing 5 n n O51 PB1 4WZ sing 6 n n CB1 PB1 4WZ sing 7 n n CB1 PA1 4WZ sing 8 n n PB1 O61 4WZ sing 9 n n O31 PA1 4WZ doub 10 n n PA1 O11 4WZ sing 11 n n PA1 O21 4WZ sing 12 n n O12 C2 4WZ sing 13 n n O11 C1 4WZ sing 14 n n O36 PA6 4WZ doub 15 n n C2 C1 4WZ sing 16 n n C2 C3 4WZ sing 17 n n C1 C6 4WZ sing 18 n n O43 PA3 4WZ doub 19 n n O33 PA3 4WZ sing 20 n n O46 PA6 4WZ sing 21 n n O13 PA3 4WZ sing 22 n n O13 C3 4WZ sing 23 n n PA6 O16 4WZ sing 24 n n PA6 O26 4WZ sing 25 n n PA3 O23 4WZ sing 26 n n C3 C4 4WZ sing 27 n n C6 O16 4WZ sing 28 n n C6 C5 4WZ sing 29 n n C4 C5 4WZ sing 30 n n C4 O14 4WZ sing 31 n n C5 O15 4WZ sing 32 n n O15 PA5 4WZ sing 33 n n O34 PA4 4WZ doub 34 n n O14 PA4 4WZ sing 35 n n O24 PA4 4WZ sing 36 n n PA4 O44 4WZ sing 37 n n O35 PA5 4WZ doub 38 n n PA5 O25 4WZ sing 39 n n PA5 CB5 4WZ sing 40 n n CB5 PB5 4WZ sing 41 n n O55 PB5 4WZ doub 42 n n PB5 O75 4WZ sing 43 n n PB5 O65 4WZ sing 44 n n C1 H1 4WZ sing 45 n n C2 H2 4WZ sing 46 n n C3 H3 4WZ sing 47 n n C4 H4 4WZ sing 48 n n C5 H5 4WZ sing 49 n n C6 H6 4WZ sing 50 n n O65 H7 4WZ sing 51 n n O75 H8 4WZ sing 52 n n CB5 H9 4WZ sing 53 n n CB5 H10 4WZ sing 54 n n O25 H11 4WZ sing 55 n n O46 H12 4WZ sing 56 n n O26 H13 4WZ sing 57 n n O24 H14 4WZ sing 58 n n O44 H15 4WZ sing 59 n n O33 H16 4WZ sing 60 n n O23 H17 4WZ sing 61 n n O42 H18 4WZ sing 62 n n O22 H19 4WZ sing 63 n n O21 H20 4WZ sing 64 n n CB1 H21 4WZ sing 65 n n CB1 H22 4WZ sing 66 n n O61 H23 4WZ sing 67 n n O51 H24 4WZ sing 68 n n # _atom_sites.entry_id 7MP1 _atom_sites.fract_transf_matrix[1][1] 0.005936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 4WZ B 1 501 401 4WZ 4WZ . F 2 4WZ B 1 502 402 4WZ 4WZ . G 2 4WZ C 1 501 401 4WZ 4WZ . H 2 4WZ D 1 501 402 4WZ 4WZ . I 2 4WZ D 1 502 401 4WZ 4WZ . J 3 HOH A 1 501 8 HOH HOH . J 3 HOH A 2 502 16 HOH HOH . J 3 HOH A 3 503 1 HOH HOH . J 3 HOH A 4 504 9 HOH HOH . J 3 HOH A 5 505 2 HOH HOH . K 3 HOH B 1 601 13 HOH HOH . K 3 HOH B 2 602 4 HOH HOH . K 3 HOH B 3 603 10 HOH HOH . K 3 HOH B 4 604 14 HOH HOH . K 3 HOH B 5 605 11 HOH HOH . K 3 HOH B 6 606 12 HOH HOH . K 3 HOH B 7 607 5 HOH HOH . L 3 HOH C 1 601 3 HOH HOH . M 3 HOH D 1 601 7 HOH HOH . M 3 HOH D 2 602 6 HOH HOH . M 3 HOH D 3 603 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4WZ . . . E 2 31.57 7.067 12.888 1 203.61 ? C1 4WZ 501 B 1 HETATM 2 C C2 4WZ . . . E 2 32.73 8.027 12.698 1 200.8 ? C2 4WZ 501 B 1 HETATM 3 C C3 4WZ . . . E 2 33.817 7.308 11.92 1 202 ? C3 4WZ 501 B 1 HETATM 4 C C4 4WZ . . . E 2 33.302 6.922 10.543 1 201.26 ? C4 4WZ 501 B 1 HETATM 5 C C5 4WZ . . . E 2 32.055 6.058 10.649 1 201.75 ? C5 4WZ 501 B 1 HETATM 6 C C6 4WZ . . . E 2 30.992 6.694 11.532 1 203.24 ? C6 4WZ 501 B 1 HETATM 7 O O55 4WZ . . . E 2 29.121 6.932 5.622 1 181.94 ? O55 4WZ 501 B 1 HETATM 8 P PB5 4WZ . . . E 2 30.208 6.931 6.687 1 201.72 ? PB5 4WZ 501 B 1 HETATM 9 O O65 4WZ . . . E 2 31.33 7.946 6.374 1 194.52 ? O65 4WZ 501 B 1 HETATM 10 O O75 4WZ . . . E 2 29.651 7.277 8.086 1 209.4 ? O75 4WZ 501 B 1 HETATM 11 C CB5 4WZ . . . E 2 31.022 5.334 6.849 1 201.78 ? CB5 4WZ 501 B 1 HETATM 12 P PA5 4WZ . . . E 2 31.12 4.613 8.494 1 201.57 ? PA5 4WZ 501 B 1 HETATM 13 O O25 4WZ . . . E 2 32.379 3.695 8.487 1 189.19 ? O25 4WZ 501 B 1 HETATM 14 O O35 4WZ . . . E 2 29.981 3.805 9.066 1 198.91 ? O35 4WZ 501 B 1 HETATM 15 O O15 4WZ . . . E 2 31.51 5.89 9.323 1 203.29 ? O15 4WZ 501 B 1 HETATM 16 O O16 4WZ . . . E 2 29.93 5.736 11.733 1 201.63 ? O16 4WZ 501 B 1 HETATM 17 P PA6 4WZ . . . E 2 28.327 5.964 11.543 1 192.14 ? PA6 4WZ 501 B 1 HETATM 18 O O46 4WZ . . . E 2 27.645 5.123 12.631 1 187.76 ? O46 4WZ 501 B 1 HETATM 19 O O36 4WZ . . . E 2 27.987 7.414 11.638 1 189.08 ? O36 4WZ 501 B 1 HETATM 20 O O26 4WZ . . . E 2 27.966 5.357 10.182 1 186.23 ? O26 4WZ 501 B 1 HETATM 21 O O14 4WZ . . . E 2 34.329 6.162 9.872 1 205.19 ? O14 4WZ 501 B 1 HETATM 22 P PA4 4WZ . . . E 2 34.767 6.133 8.334 1 202.85 ? PA4 4WZ 501 B 1 HETATM 23 O O24 4WZ . . . E 2 34.707 4.661 7.905 1 200.32 ? O24 4WZ 501 B 1 HETATM 24 O O44 4WZ . . . E 2 33.686 6.899 7.563 1 206.91 ? O44 4WZ 501 B 1 HETATM 25 O O34 4WZ . . . E 2 36.125 6.728 8.181 1 200.24 ? O34 4WZ 501 B 1 HETATM 26 O O13 4WZ . . . E 2 34.962 8.175 11.776 1 206.09 ? O13 4WZ 501 B 1 HETATM 27 P PA3 4WZ . . . E 2 36.51 7.751 12.058 1 205.49 ? PA3 4WZ 501 B 1 HETATM 28 O O43 4WZ . . . E 2 37.246 7.572 10.773 1 203.24 ? O43 4WZ 501 B 1 HETATM 29 O O33 4WZ . . . E 2 36.466 6.469 12.9 1 205.45 ? O33 4WZ 501 B 1 HETATM 30 O O23 4WZ . . . E 2 37.107 8.865 12.927 1 203.88 ? O23 4WZ 501 B 1 HETATM 31 O O12 4WZ . . . E 2 32.269 9.158 11.928 1 198.07 ? O12 4WZ 501 B 1 HETATM 32 P PA2 4WZ . . . E 2 32.899 10.592 11.579 1 200.61 ? PA2 4WZ 501 B 1 HETATM 33 O O42 4WZ . . . E 2 34.152 10.319 10.737 1 200.69 ? O42 4WZ 501 B 1 HETATM 34 O O22 4WZ . . . E 2 33.338 11.205 12.914 1 199.79 ? O22 4WZ 501 B 1 HETATM 35 O O32 4WZ . . . E 2 31.905 11.44 10.859 1 193.76 ? O32 4WZ 501 B 1 HETATM 36 O O11 4WZ . . . E 2 30.55 7.698 13.692 1 208.73 ? O11 4WZ 501 B 1 HETATM 37 P PA1 4WZ . . . E 2 29.852 7.063 14.95 1 206.64 ? PA1 4WZ 501 B 1 HETATM 38 O O21 4WZ . . . E 2 28.326 7.025 14.636 1 200.57 ? O21 4WZ 501 B 1 HETATM 39 O O31 4WZ . . . E 2 30.28 5.654 15.276 1 208.41 ? O31 4WZ 501 B 1 HETATM 40 C CB1 4WZ . . . E 2 30.076 8.392 16.14 1 196.79 ? CB1 4WZ 501 B 1 HETATM 41 P PB1 4WZ . . . E 2 31.767 8.794 16.601 1 191.22 ? PB1 4WZ 501 B 1 HETATM 42 O O61 4WZ . . . E 2 31.73 9.097 18.116 1 190.03 ? O61 4WZ 501 B 1 HETATM 43 O O71 4WZ . . . E 2 32.338 9.931 15.815 1 191.9 ? O71 4WZ 501 B 1 HETATM 44 O O51 4WZ . . . E 2 32.578 7.492 16.413 1 184.46 ? O51 4WZ 501 B 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #