data_7MP1
#
_model_server_result.job_id            0JEUEN_JzP41wA1h5dSEPQ 
_model_server_result.datetime_utc      '2024-11-13 18:36:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mp1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    7MP1 
#
_exptl.entry_id    7MP1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              816.049 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MP1 
_cell.length_a            168.467 
_cell.length_b            187.229 
_cell.length_c            90.743 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C8 H24 O28 P8' 
_chem_comp.formula_weight    816.049 
_chem_comp.id                4WZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O32 PA2 4WZ doub 1 n n 
O71 PB1 4WZ doub 2 n n 
O42 PA2 4WZ sing 3 n n 
O22 PA2 4WZ sing 4 n n 
PA2 O12 4WZ sing 5 n n 
O51 PB1 4WZ sing 6 n n 
CB1 PB1 4WZ sing 7 n n 
CB1 PA1 4WZ sing 8 n n 
PB1 O61 4WZ sing 9 n n 
O31 PA1 4WZ doub 10 n n 
PA1 O11 4WZ sing 11 n n 
PA1 O21 4WZ sing 12 n n 
O12 C2 4WZ sing 13 n n 
O11 C1 4WZ sing 14 n n 
O36 PA6 4WZ doub 15 n n 
C2 C1 4WZ sing 16 n n 
C2 C3 4WZ sing 17 n n 
C1 C6 4WZ sing 18 n n 
O43 PA3 4WZ doub 19 n n 
O33 PA3 4WZ sing 20 n n 
O46 PA6 4WZ sing 21 n n 
O13 PA3 4WZ sing 22 n n 
O13 C3 4WZ sing 23 n n 
PA6 O16 4WZ sing 24 n n 
PA6 O26 4WZ sing 25 n n 
PA3 O23 4WZ sing 26 n n 
C3 C4 4WZ sing 27 n n 
C6 O16 4WZ sing 28 n n 
C6 C5 4WZ sing 29 n n 
C4 C5 4WZ sing 30 n n 
C4 O14 4WZ sing 31 n n 
C5 O15 4WZ sing 32 n n 
O15 PA5 4WZ sing 33 n n 
O34 PA4 4WZ doub 34 n n 
O14 PA4 4WZ sing 35 n n 
O24 PA4 4WZ sing 36 n n 
PA4 O44 4WZ sing 37 n n 
O35 PA5 4WZ doub 38 n n 
PA5 O25 4WZ sing 39 n n 
PA5 CB5 4WZ sing 40 n n 
CB5 PB5 4WZ sing 41 n n 
O55 PB5 4WZ doub 42 n n 
PB5 O75 4WZ sing 43 n n 
PB5 O65 4WZ sing 44 n n 
C1 H1 4WZ sing 45 n n 
C2 H2 4WZ sing 46 n n 
C3 H3 4WZ sing 47 n n 
C4 H4 4WZ sing 48 n n 
C5 H5 4WZ sing 49 n n 
C6 H6 4WZ sing 50 n n 
O65 H7 4WZ sing 51 n n 
O75 H8 4WZ sing 52 n n 
CB5 H9 4WZ sing 53 n n 
CB5 H10 4WZ sing 54 n n 
O25 H11 4WZ sing 55 n n 
O46 H12 4WZ sing 56 n n 
O26 H13 4WZ sing 57 n n 
O24 H14 4WZ sing 58 n n 
O44 H15 4WZ sing 59 n n 
O33 H16 4WZ sing 60 n n 
O23 H17 4WZ sing 61 n n 
O42 H18 4WZ sing 62 n n 
O22 H19 4WZ sing 63 n n 
O21 H20 4WZ sing 64 n n 
CB1 H21 4WZ sing 65 n n 
CB1 H22 4WZ sing 66 n n 
O61 H23 4WZ sing 67 n n 
O51 H24 4WZ sing 68 n n 
#
_atom_sites.entry_id                     7MP1 
_atom_sites.fract_transf_matrix[1][1]    0.005936 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005341 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 4WZ B 1 501 401 4WZ 4WZ . 
F 2 4WZ B 1 502 402 4WZ 4WZ . 
G 2 4WZ C 1 501 401 4WZ 4WZ . 
H 2 4WZ D 1 501 402 4WZ 4WZ . 
I 2 4WZ D 1 502 401 4WZ 4WZ . 
J 3 HOH A 1 501 8 HOH HOH . 
J 3 HOH A 2 502 16 HOH HOH . 
J 3 HOH A 3 503 1 HOH HOH . 
J 3 HOH A 4 504 9 HOH HOH . 
J 3 HOH A 5 505 2 HOH HOH . 
K 3 HOH B 1 601 13 HOH HOH . 
K 3 HOH B 2 602 4 HOH HOH . 
K 3 HOH B 3 603 10 HOH HOH . 
K 3 HOH B 4 604 14 HOH HOH . 
K 3 HOH B 5 605 11 HOH HOH . 
K 3 HOH B 6 606 12 HOH HOH . 
K 3 HOH B 7 607 5 HOH HOH . 
L 3 HOH C 1 601 3 HOH HOH . 
M 3 HOH D 1 601 7 HOH HOH . 
M 3 HOH D 2 602 6 HOH HOH . 
M 3 HOH D 3 603 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4WZ . . . E 2 31.57 7.067 12.888 1 203.61 ? C1 4WZ 501 B 1 
HETATM 2 C C2 4WZ . . . E 2 32.73 8.027 12.698 1 200.8 ? C2 4WZ 501 B 1 
HETATM 3 C C3 4WZ . . . E 2 33.817 7.308 11.92 1 202 ? C3 4WZ 501 B 1 
HETATM 4 C C4 4WZ . . . E 2 33.302 6.922 10.543 1 201.26 ? C4 4WZ 501 B 1 
HETATM 5 C C5 4WZ . . . E 2 32.055 6.058 10.649 1 201.75 ? C5 4WZ 501 B 1 
HETATM 6 C C6 4WZ . . . E 2 30.992 6.694 11.532 1 203.24 ? C6 4WZ 501 B 1 
HETATM 7 O O55 4WZ . . . E 2 29.121 6.932 5.622 1 181.94 ? O55 4WZ 501 B 1 
HETATM 8 P PB5 4WZ . . . E 2 30.208 6.931 6.687 1 201.72 ? PB5 4WZ 501 B 1 
HETATM 9 O O65 4WZ . . . E 2 31.33 7.946 6.374 1 194.52 ? O65 4WZ 501 B 1 
HETATM 10 O O75 4WZ . . . E 2 29.651 7.277 8.086 1 209.4 ? O75 4WZ 501 B 1 
HETATM 11 C CB5 4WZ . . . E 2 31.022 5.334 6.849 1 201.78 ? CB5 4WZ 501 B 1 
HETATM 12 P PA5 4WZ . . . E 2 31.12 4.613 8.494 1 201.57 ? PA5 4WZ 501 B 1 
HETATM 13 O O25 4WZ . . . E 2 32.379 3.695 8.487 1 189.19 ? O25 4WZ 501 B 1 
HETATM 14 O O35 4WZ . . . E 2 29.981 3.805 9.066 1 198.91 ? O35 4WZ 501 B 1 
HETATM 15 O O15 4WZ . . . E 2 31.51 5.89 9.323 1 203.29 ? O15 4WZ 501 B 1 
HETATM 16 O O16 4WZ . . . E 2 29.93 5.736 11.733 1 201.63 ? O16 4WZ 501 B 1 
HETATM 17 P PA6 4WZ . . . E 2 28.327 5.964 11.543 1 192.14 ? PA6 4WZ 501 B 1 
HETATM 18 O O46 4WZ . . . E 2 27.645 5.123 12.631 1 187.76 ? O46 4WZ 501 B 1 
HETATM 19 O O36 4WZ . . . E 2 27.987 7.414 11.638 1 189.08 ? O36 4WZ 501 B 1 
HETATM 20 O O26 4WZ . . . E 2 27.966 5.357 10.182 1 186.23 ? O26 4WZ 501 B 1 
HETATM 21 O O14 4WZ . . . E 2 34.329 6.162 9.872 1 205.19 ? O14 4WZ 501 B 1 
HETATM 22 P PA4 4WZ . . . E 2 34.767 6.133 8.334 1 202.85 ? PA4 4WZ 501 B 1 
HETATM 23 O O24 4WZ . . . E 2 34.707 4.661 7.905 1 200.32 ? O24 4WZ 501 B 1 
HETATM 24 O O44 4WZ . . . E 2 33.686 6.899 7.563 1 206.91 ? O44 4WZ 501 B 1 
HETATM 25 O O34 4WZ . . . E 2 36.125 6.728 8.181 1 200.24 ? O34 4WZ 501 B 1 
HETATM 26 O O13 4WZ . . . E 2 34.962 8.175 11.776 1 206.09 ? O13 4WZ 501 B 1 
HETATM 27 P PA3 4WZ . . . E 2 36.51 7.751 12.058 1 205.49 ? PA3 4WZ 501 B 1 
HETATM 28 O O43 4WZ . . . E 2 37.246 7.572 10.773 1 203.24 ? O43 4WZ 501 B 1 
HETATM 29 O O33 4WZ . . . E 2 36.466 6.469 12.9 1 205.45 ? O33 4WZ 501 B 1 
HETATM 30 O O23 4WZ . . . E 2 37.107 8.865 12.927 1 203.88 ? O23 4WZ 501 B 1 
HETATM 31 O O12 4WZ . . . E 2 32.269 9.158 11.928 1 198.07 ? O12 4WZ 501 B 1 
HETATM 32 P PA2 4WZ . . . E 2 32.899 10.592 11.579 1 200.61 ? PA2 4WZ 501 B 1 
HETATM 33 O O42 4WZ . . . E 2 34.152 10.319 10.737 1 200.69 ? O42 4WZ 501 B 1 
HETATM 34 O O22 4WZ . . . E 2 33.338 11.205 12.914 1 199.79 ? O22 4WZ 501 B 1 
HETATM 35 O O32 4WZ . . . E 2 31.905 11.44 10.859 1 193.76 ? O32 4WZ 501 B 1 
HETATM 36 O O11 4WZ . . . E 2 30.55 7.698 13.692 1 208.73 ? O11 4WZ 501 B 1 
HETATM 37 P PA1 4WZ . . . E 2 29.852 7.063 14.95 1 206.64 ? PA1 4WZ 501 B 1 
HETATM 38 O O21 4WZ . . . E 2 28.326 7.025 14.636 1 200.57 ? O21 4WZ 501 B 1 
HETATM 39 O O31 4WZ . . . E 2 30.28 5.654 15.276 1 208.41 ? O31 4WZ 501 B 1 
HETATM 40 C CB1 4WZ . . . E 2 30.076 8.392 16.14 1 196.79 ? CB1 4WZ 501 B 1 
HETATM 41 P PB1 4WZ . . . E 2 31.767 8.794 16.601 1 191.22 ? PB1 4WZ 501 B 1 
HETATM 42 O O61 4WZ . . . E 2 31.73 9.097 18.116 1 190.03 ? O61 4WZ 501 B 1 
HETATM 43 O O71 4WZ . . . E 2 32.338 9.931 15.815 1 191.9 ? O71 4WZ 501 B 1 
HETATM 44 O O51 4WZ . . . E 2 32.578 7.492 16.413 1 184.46 ? O51 4WZ 501 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           44 
#