data_7MP2 # _model_server_result.job_id 5HpbeXO9vqi6bPAAq26I4Q _model_server_result.datetime_utc '2024-11-13 18:01:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7MP2 # _exptl.entry_id 7MP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 819.995 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MP2 _cell.length_a 168.9 _cell.length_b 187.094 _cell.length_c 90.385 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C6 H20 O30 P8' _chem_comp.formula_weight 819.995 _chem_comp.id I8P _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1D-myo-inositol 1,5-bisdiphosphate 2,3,4,6-tetrakisphosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 I8P sing 152 n n C2 C1 I8P sing 153 n n C1 C6 I8P sing 154 n n C1 H1 I8P sing 155 n n O12 C2 I8P sing 156 n n C2 C3 I8P sing 157 n n C2 H2 I8P sing 158 n n O13 C3 I8P sing 159 n n C3 C4 I8P sing 160 n n C3 H3 I8P sing 161 n n C4 C5 I8P sing 162 n n C4 O14 I8P sing 163 n n C4 H4 I8P sing 164 n n C6 C5 I8P sing 165 n n C5 O15 I8P sing 166 n n C5 H5 I8P sing 167 n n C6 O16 I8P sing 168 n n C6 H6 I8P sing 169 n n PA1 O11 I8P sing 170 n n PA2 O12 I8P sing 171 n n O13 PA3 I8P sing 172 n n O14 PA4 I8P sing 173 n n O15 PA5 I8P sing 174 n n PA6 O16 I8P sing 175 n n O21 PA1 I8P doub 176 n n O22 PA2 I8P sing 177 n n O22 HO22 I8P sing 178 n n PA3 O23 I8P sing 179 n n O23 HO23 I8P sing 180 n n O24 PA4 I8P sing 181 n n O24 HO24 I8P sing 182 n n PA5 O25 I8P doub 183 n n PA6 O26 I8P sing 184 n n O26 HO26 I8P sing 185 n n O31 PA1 I8P sing 186 n n O31 HO31 I8P sing 187 n n O32 PA2 I8P doub 188 n n O33 PA3 I8P doub 189 n n O34 PA4 I8P doub 190 n n PA5 O35 I8P sing 191 n n O35 HO35 I8P sing 192 n n PA6 O36 I8P sing 193 n n O36 HO36 I8P sing 194 n n PA1 O41 I8P sing 195 n n O41 PB1 I8P sing 196 n n PA2 O42 I8P sing 197 n n O42 HO42 I8P sing 198 n n O43 PA3 I8P sing 199 n n O43 HO43 I8P sing 200 n n PA4 O44 I8P sing 201 n n O44 HO44 I8P sing 202 n n O45 PA5 I8P sing 203 n n O45 PB5 I8P sing 204 n n O46 PA6 I8P doub 205 n n O51 PB1 I8P sing 206 n n O51 HO51 I8P sing 207 n n O55 PB5 I8P doub 208 n n O61 PB1 I8P doub 209 n n O65 PB5 I8P sing 210 n n O65 HO65 I8P sing 211 n n PB1 O71 I8P sing 212 n n O71 HO71 I8P sing 213 n n PB5 O75 I8P sing 214 n n O75 HO75 I8P sing 215 n n # _atom_sites.entry_id 7MP2 _atom_sites.fract_transf_matrix[1][1] 0.005921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 I8P A 1 501 401 I8P I8P . F 2 I8P B 1 501 401 I8P I8P . G 2 I8P C 1 501 402 I8P I8P . H 2 I8P C 1 502 401 I8P I8P . I 2 I8P D 1 501 401 I8P I8P . J 2 I8P D 1 502 402 I8P I8P . K 3 HOH A 1 601 8 HOH HOH . K 3 HOH A 2 602 4 HOH HOH . K 3 HOH A 3 603 3 HOH HOH . K 3 HOH A 4 604 1 HOH HOH . L 3 HOH C 1 601 10 HOH HOH . L 3 HOH C 2 602 2 HOH HOH . M 3 HOH D 1 601 5 HOH HOH . M 3 HOH D 2 602 7 HOH HOH . M 3 HOH D 3 603 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I8P . . . E 2 109.946 45.439 -8.944 1 256.61 ? C1 I8P 501 A 1 HETATM 2 C C2 I8P . . . E 2 108.972 45.64 -7.797 1 249.77 ? C2 I8P 501 A 1 HETATM 3 C C3 I8P . . . E 2 108.211 46.926 -8.059 1 242.77 ? C3 I8P 501 A 1 HETATM 4 C C4 I8P . . . E 2 107.365 46.757 -9.31 1 243.76 ? C4 I8P 501 A 1 HETATM 5 C C5 I8P . . . E 2 108.236 46.412 -10.509 1 255.04 ? C5 I8P 501 A 1 HETATM 6 C C6 I8P . . . E 2 109.179 45.247 -10.242 1 260.06 ? C6 I8P 501 A 1 HETATM 7 O O11 I8P . . . E 2 110.748 44.268 -8.68 1 260.01 ? O11 I8P 501 A 1 HETATM 8 O O12 I8P . . . E 2 108.031 44.538 -7.778 1 246.93 ? O12 I8P 501 A 1 HETATM 9 O O13 I8P . . . E 2 107.363 47.22 -6.927 1 228.16 ? O13 I8P 501 A 1 HETATM 10 O O14 I8P . . . E 2 106.685 48.002 -9.582 1 230.79 ? O14 I8P 501 A 1 HETATM 11 O O15 I8P . . . E 2 107.371 46.062 -11.612 1 270.65 ? O15 I8P 501 A 1 HETATM 12 O O16 I8P . . . E 2 110.131 45.18 -11.326 1 256.75 ? O16 I8P 501 A 1 HETATM 13 O O21 I8P . . . E 2 112.98 43.133 -8.146 1 262.16 ? O21 I8P 501 A 1 HETATM 14 O O22 I8P . . . E 2 109.021 42.232 -8.022 1 229.5 ? O22 I8P 501 A 1 HETATM 15 O O23 I8P . . . E 2 109.319 48.223 -5.624 1 196.82 ? O23 I8P 501 A 1 HETATM 16 O O24 I8P . . . E 2 104.548 47.409 -8.408 1 212.57 ? O24 I8P 501 A 1 HETATM 17 O O25 I8P . . . E 2 107.754 43.8 -12.787 1 288.38 ? O25 I8P 501 A 1 HETATM 18 O O26 I8P . . . E 2 110.44 42.681 -11.275 1 237.45 ? O26 I8P 501 A 1 HETATM 19 O O31 I8P . . . E 2 112.683 45.625 -7.79 1 253.13 ? O31 I8P 501 A 1 HETATM 20 O O32 I8P . . . E 2 108.631 43.158 -5.711 1 220.79 ? O32 I8P 501 A 1 HETATM 21 O O33 I8P . . . E 2 107.225 49.595 -5.922 1 192.59 ? O33 I8P 501 A 1 HETATM 22 O O34 I8P . . . E 2 104.458 48.889 -10.44 1 208.14 ? O34 I8P 501 A 1 HETATM 23 O O35 I8P . . . E 2 105.464 44.866 -12.795 1 278.9 ? O35 I8P 501 A 1 HETATM 24 O O36 I8P . . . E 2 112.429 44.165 -11.424 1 237.15 ? O36 I8P 501 A 1 HETATM 25 O O41 I8P . . . E 2 111.516 44.009 -6.261 1 241.82 ? O41 I8P 501 A 1 HETATM 26 O O42 I8P . . . E 2 106.707 42.487 -7.174 1 224.97 ? O42 I8P 501 A 1 HETATM 27 O O43 I8P . . . E 2 107.255 47.588 -4.402 1 187.89 ? O43 I8P 501 A 1 HETATM 28 O O44 I8P . . . E 2 105.421 49.729 -8.277 1 218.3 ? O44 I8P 501 A 1 HETATM 29 O O45 I8P . . . E 2 106.353 43.856 -10.681 1 260.91 ? O45 I8P 501 A 1 HETATM 30 O O46 I8P . . . E 2 110.903 43.93 -13.411 1 241.68 ? O46 I8P 501 A 1 HETATM 31 O O51 I8P . . . E 2 110.637 42.132 -4.898 1 220.62 ? O51 I8P 501 A 1 HETATM 32 O O55 I8P . . . E 2 107.217 41.566 -9.955 1 226.07 ? O55 I8P 501 A 1 HETATM 33 O O61 I8P . . . E 2 112.258 43.754 -3.831 1 202.36 ? O61 I8P 501 A 1 HETATM 34 O O65 I8P . . . E 2 104.962 42.433 -9.209 1 225.94 ? O65 I8P 501 A 1 HETATM 35 O O71 I8P . . . E 2 113.02 42.138 -5.628 1 217.81 ? O71 I8P 501 A 1 HETATM 36 O O75 I8P . . . E 2 105.31 41.808 -11.598 1 235.78 ? O75 I8P 501 A 1 HETATM 37 P PA1 I8P . . . E 2 112.068 44.224 -7.74 1 257.54 ? PA1 I8P 501 A 1 HETATM 38 P PA2 I8P . . . E 2 108.122 43.074 -7.108 1 230.69 ? PA2 I8P 501 A 1 HETATM 39 P PA3 I8P . . . E 2 107.785 48.232 -5.69 1 200.04 ? PA3 I8P 501 A 1 HETATM 40 P PA4 I8P . . . E 2 105.22 48.529 -9.21 1 217.4 ? PA4 I8P 501 A 1 HETATM 41 P PA5 I8P . . . E 2 106.761 44.592 -12.032 1 283.39 ? PA5 I8P 501 A 1 HETATM 42 P PA6 I8P . . . E 2 110.994 43.955 -11.922 1 240.16 ? PA6 I8P 501 A 1 HETATM 43 P PB1 I8P . . . E 2 111.886 43.004 -5.067 1 220.37 ? PB1 I8P 501 A 1 HETATM 44 P PB5 I8P . . . E 2 105.998 42.338 -10.335 1 238.95 ? PB5 I8P 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #