data_7MP2 # _model_server_result.job_id '_EL-D-Vz0K7RkBCx5zP7Nw' _model_server_result.datetime_utc '2024-11-13 17:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 7MP2 # _exptl.entry_id 7MP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 819.995 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MP2 _cell.length_a 168.9 _cell.length_b 187.094 _cell.length_c 90.385 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C6 H20 O30 P8' _chem_comp.formula_weight 819.995 _chem_comp.id I8P _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1D-myo-inositol 1,5-bisdiphosphate 2,3,4,6-tetrakisphosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 I8P sing 152 n n C2 C1 I8P sing 153 n n C1 C6 I8P sing 154 n n C1 H1 I8P sing 155 n n O12 C2 I8P sing 156 n n C2 C3 I8P sing 157 n n C2 H2 I8P sing 158 n n O13 C3 I8P sing 159 n n C3 C4 I8P sing 160 n n C3 H3 I8P sing 161 n n C4 C5 I8P sing 162 n n C4 O14 I8P sing 163 n n C4 H4 I8P sing 164 n n C6 C5 I8P sing 165 n n C5 O15 I8P sing 166 n n C5 H5 I8P sing 167 n n C6 O16 I8P sing 168 n n C6 H6 I8P sing 169 n n PA1 O11 I8P sing 170 n n PA2 O12 I8P sing 171 n n O13 PA3 I8P sing 172 n n O14 PA4 I8P sing 173 n n O15 PA5 I8P sing 174 n n PA6 O16 I8P sing 175 n n O21 PA1 I8P doub 176 n n O22 PA2 I8P sing 177 n n O22 HO22 I8P sing 178 n n PA3 O23 I8P sing 179 n n O23 HO23 I8P sing 180 n n O24 PA4 I8P sing 181 n n O24 HO24 I8P sing 182 n n PA5 O25 I8P doub 183 n n PA6 O26 I8P sing 184 n n O26 HO26 I8P sing 185 n n O31 PA1 I8P sing 186 n n O31 HO31 I8P sing 187 n n O32 PA2 I8P doub 188 n n O33 PA3 I8P doub 189 n n O34 PA4 I8P doub 190 n n PA5 O35 I8P sing 191 n n O35 HO35 I8P sing 192 n n PA6 O36 I8P sing 193 n n O36 HO36 I8P sing 194 n n PA1 O41 I8P sing 195 n n O41 PB1 I8P sing 196 n n PA2 O42 I8P sing 197 n n O42 HO42 I8P sing 198 n n O43 PA3 I8P sing 199 n n O43 HO43 I8P sing 200 n n PA4 O44 I8P sing 201 n n O44 HO44 I8P sing 202 n n O45 PA5 I8P sing 203 n n O45 PB5 I8P sing 204 n n O46 PA6 I8P doub 205 n n O51 PB1 I8P sing 206 n n O51 HO51 I8P sing 207 n n O55 PB5 I8P doub 208 n n O61 PB1 I8P doub 209 n n O65 PB5 I8P sing 210 n n O65 HO65 I8P sing 211 n n PB1 O71 I8P sing 212 n n O71 HO71 I8P sing 213 n n PB5 O75 I8P sing 214 n n O75 HO75 I8P sing 215 n n # _atom_sites.entry_id 7MP2 _atom_sites.fract_transf_matrix[1][1] 0.005921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 I8P A 1 501 401 I8P I8P . F 2 I8P B 1 501 401 I8P I8P . G 2 I8P C 1 501 402 I8P I8P . H 2 I8P C 1 502 401 I8P I8P . I 2 I8P D 1 501 401 I8P I8P . J 2 I8P D 1 502 402 I8P I8P . K 3 HOH A 1 601 8 HOH HOH . K 3 HOH A 2 602 4 HOH HOH . K 3 HOH A 3 603 3 HOH HOH . K 3 HOH A 4 604 1 HOH HOH . L 3 HOH C 1 601 10 HOH HOH . L 3 HOH C 2 602 2 HOH HOH . M 3 HOH D 1 601 5 HOH HOH . M 3 HOH D 2 602 7 HOH HOH . M 3 HOH D 3 603 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I8P . . . I 2 73.613 50.25 10.435 1 220.87 ? C1 I8P 501 D 1 HETATM 2 C C2 I8P . . . I 2 73.135 49.201 11.422 1 211.48 ? C2 I8P 501 D 1 HETATM 3 C C3 I8P . . . I 2 74.134 49.077 12.56 1 204.18 ? C3 I8P 501 D 1 HETATM 4 C C4 I8P . . . I 2 74.429 50.409 13.235 1 204.23 ? C4 I8P 501 D 1 HETATM 5 C C5 I8P . . . I 2 74.636 51.571 12.273 1 209.82 ? C5 I8P 501 D 1 HETATM 6 C C6 I8P . . . I 2 73.636 51.599 11.129 1 217.06 ? C6 I8P 501 D 1 HETATM 7 O O11 I8P . . . I 2 72.7 50.303 9.319 1 230.24 ? O11 I8P 501 D 1 HETATM 8 O O12 I8P . . . I 2 71.855 49.603 11.958 1 208.33 ? O12 I8P 501 D 1 HETATM 9 O O13 I8P . . . I 2 73.58 48.19 13.556 1 193.37 ? O13 I8P 501 D 1 HETATM 10 O O14 I8P . . . I 2 75.662 50.248 13.97 1 199.82 ? O14 I8P 501 D 1 HETATM 11 O O15 I8P . . . I 2 74.506 52.804 13.016 1 209.67 ? O15 I8P 501 D 1 HETATM 12 O O16 I8P . . . I 2 74.051 52.601 10.177 1 216.16 ? O16 I8P 501 D 1 HETATM 13 O O21 I8P . . . I 2 74.551 50.11 7.548 1 228.06 ? O21 I8P 501 D 1 HETATM 14 O O22 I8P . . . I 2 69.697 48.327 12.118 1 197.06 ? O22 I8P 501 D 1 HETATM 15 O O23 I8P . . . I 2 74.682 45.902 13.349 1 200.16 ? O23 I8P 501 D 1 HETATM 16 O O24 I8P . . . I 2 77.031 49.108 15.727 1 179.37 ? O24 I8P 501 D 1 HETATM 17 O O25 I8P . . . I 2 72.032 53.545 12.693 1 206.29 ? O25 I8P 501 D 1 HETATM 18 O O26 I8P . . . I 2 72.181 54.298 10.153 1 194.62 ? O26 I8P 501 D 1 HETATM 19 O O31 I8P . . . I 2 72.167 49.463 6.992 1 222.73 ? O31 I8P 501 D 1 HETATM 20 O O32 I8P . . . I 2 69.657 50.729 11.362 1 187.42 ? O32 I8P 501 D 1 HETATM 21 O O33 I8P . . . I 2 72.499 46.291 12.153 1 185.99 ? O33 I8P 501 D 1 HETATM 22 O O34 I8P . . . I 2 74.779 50.064 16.344 1 184.34 ? O34 I8P 501 D 1 HETATM 23 O O35 I8P . . . I 2 73.58 54.873 14.178 1 197.46 ? O35 I8P 501 D 1 HETATM 24 O O36 I8P . . . I 2 74.106 54.576 8.618 1 195.6 ? O36 I8P 501 D 1 HETATM 25 O O41 I8P . . . I 2 72.743 51.886 7.335 1 229.28 ? O41 I8P 501 D 1 HETATM 26 O O42 I8P . . . I 2 70.611 48.915 9.89 1 184.95 ? O42 I8P 501 D 1 HETATM 27 O O43 I8P . . . I 2 72.587 46.128 14.66 1 176.05 ? O43 I8P 501 D 1 HETATM 28 O O44 I8P . . . I 2 76.737 51.566 15.804 1 181.55 ? O44 I8P 501 D 1 HETATM 29 O O45 I8P . . . I 2 72.779 52.615 14.923 1 198.06 ? O45 I8P 501 D 1 HETATM 30 O O46 I8P . . . I 2 74.426 54.968 11.077 1 203.99 ? O46 I8P 501 D 1 HETATM 31 O O51 I8P . . . I 2 71.913 54.225 7.299 1 203.28 ? O51 I8P 501 D 1 HETATM 32 O O55 I8P . . . I 2 70.802 52.843 16.508 1 172.72 ? O55 I8P 501 D 1 HETATM 33 O O61 I8P . . . I 2 70.763 52.553 8.801 1 212.31 ? O61 I8P 501 D 1 HETATM 34 O O65 I8P . . . I 2 71.807 50.585 15.955 1 152.9 ? O65 I8P 501 D 1 HETATM 35 O O71 I8P . . . I 2 70.555 52.396 6.281 1 220.07 ? O71 I8P 501 D 1 HETATM 36 O O75 I8P . . . I 2 70.543 51.835 14.199 1 173.11 ? O75 I8P 501 D 1 HETATM 37 P PA1 I8P . . . I 2 73.113 50.394 7.753 1 232.88 ? PA1 I8P 501 D 1 HETATM 38 P PA2 I8P . . . I 2 70.393 49.432 11.316 1 193.05 ? PA2 I8P 501 D 1 HETATM 39 P PA3 I8P . . . I 2 73.302 46.573 13.378 1 190.16 ? PA3 I8P 501 D 1 HETATM 40 P PA4 I8P . . . I 2 76.015 50.241 15.526 1 187.45 ? PA4 I8P 501 D 1 HETATM 41 P PA5 I8P . . . I 2 73.153 53.5 13.653 1 211.2 ? PA5 I8P 501 D 1 HETATM 42 P PA6 I8P . . . I 2 73.705 54.174 10.041 1 203.74 ? PA6 I8P 501 D 1 HETATM 43 P PB1 I8P . . . I 2 71.423 52.784 7.485 1 215.47 ? PB1 I8P 501 D 1 HETATM 44 P PB5 I8P . . . I 2 71.414 51.981 15.454 1 179.11 ? PB5 I8P 501 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #