data_7MP2
#
_model_server_result.job_id            3hapwyNiJD_XKUygsNcibQ 
_model_server_result.datetime_utc      '2024-11-13 17:42:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mp2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    7MP2 
#
_exptl.entry_id    7MP2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              819.995 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MP2 
_cell.length_a            168.9 
_cell.length_b            187.094 
_cell.length_c            90.385 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MP2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C6 H20 O30 P8' 
_chem_comp.formula_weight    819.995 
_chem_comp.id                I8P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1D-myo-inositol 1,5-bisdiphosphate 2,3,4,6-tetrakisphosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C1 I8P sing 152 n n 
C2 C1 I8P sing 153 n n 
C1 C6 I8P sing 154 n n 
C1 H1 I8P sing 155 n n 
O12 C2 I8P sing 156 n n 
C2 C3 I8P sing 157 n n 
C2 H2 I8P sing 158 n n 
O13 C3 I8P sing 159 n n 
C3 C4 I8P sing 160 n n 
C3 H3 I8P sing 161 n n 
C4 C5 I8P sing 162 n n 
C4 O14 I8P sing 163 n n 
C4 H4 I8P sing 164 n n 
C6 C5 I8P sing 165 n n 
C5 O15 I8P sing 166 n n 
C5 H5 I8P sing 167 n n 
C6 O16 I8P sing 168 n n 
C6 H6 I8P sing 169 n n 
PA1 O11 I8P sing 170 n n 
PA2 O12 I8P sing 171 n n 
O13 PA3 I8P sing 172 n n 
O14 PA4 I8P sing 173 n n 
O15 PA5 I8P sing 174 n n 
PA6 O16 I8P sing 175 n n 
O21 PA1 I8P doub 176 n n 
O22 PA2 I8P sing 177 n n 
O22 HO22 I8P sing 178 n n 
PA3 O23 I8P sing 179 n n 
O23 HO23 I8P sing 180 n n 
O24 PA4 I8P sing 181 n n 
O24 HO24 I8P sing 182 n n 
PA5 O25 I8P doub 183 n n 
PA6 O26 I8P sing 184 n n 
O26 HO26 I8P sing 185 n n 
O31 PA1 I8P sing 186 n n 
O31 HO31 I8P sing 187 n n 
O32 PA2 I8P doub 188 n n 
O33 PA3 I8P doub 189 n n 
O34 PA4 I8P doub 190 n n 
PA5 O35 I8P sing 191 n n 
O35 HO35 I8P sing 192 n n 
PA6 O36 I8P sing 193 n n 
O36 HO36 I8P sing 194 n n 
PA1 O41 I8P sing 195 n n 
O41 PB1 I8P sing 196 n n 
PA2 O42 I8P sing 197 n n 
O42 HO42 I8P sing 198 n n 
O43 PA3 I8P sing 199 n n 
O43 HO43 I8P sing 200 n n 
PA4 O44 I8P sing 201 n n 
O44 HO44 I8P sing 202 n n 
O45 PA5 I8P sing 203 n n 
O45 PB5 I8P sing 204 n n 
O46 PA6 I8P doub 205 n n 
O51 PB1 I8P sing 206 n n 
O51 HO51 I8P sing 207 n n 
O55 PB5 I8P doub 208 n n 
O61 PB1 I8P doub 209 n n 
O65 PB5 I8P sing 210 n n 
O65 HO65 I8P sing 211 n n 
PB1 O71 I8P sing 212 n n 
O71 HO71 I8P sing 213 n n 
PB5 O75 I8P sing 214 n n 
O75 HO75 I8P sing 215 n n 
#
_atom_sites.entry_id                     7MP2 
_atom_sites.fract_transf_matrix[1][1]    0.005921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 I8P A 1 501 401 I8P I8P . 
F 2 I8P B 1 501 401 I8P I8P . 
G 2 I8P C 1 501 402 I8P I8P . 
H 2 I8P C 1 502 401 I8P I8P . 
I 2 I8P D 1 501 401 I8P I8P . 
J 2 I8P D 1 502 402 I8P I8P . 
K 3 HOH A 1 601 8 HOH HOH . 
K 3 HOH A 2 602 4 HOH HOH . 
K 3 HOH A 3 603 3 HOH HOH . 
K 3 HOH A 4 604 1 HOH HOH . 
L 3 HOH C 1 601 10 HOH HOH . 
L 3 HOH C 2 602 2 HOH HOH . 
M 3 HOH D 1 601 5 HOH HOH . 
M 3 HOH D 2 602 7 HOH HOH . 
M 3 HOH D 3 603 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I8P . . . H 2 39.25 -30.215 28.748 1 232.98 ? C1 I8P 502 C 1 
HETATM 2 C C2 I8P . . . H 2 38.596 -28.887 29.077 1 242.92 ? C2 I8P 502 C 1 
HETATM 3 C C3 I8P . . . H 2 38.594 -28.745 30.587 1 244.69 ? C3 I8P 502 C 1 
HETATM 4 C C4 I8P . . . H 2 40.026 -28.623 31.08 1 241.26 ? C4 I8P 502 C 1 
HETATM 5 C C5 I8P . . . H 2 40.886 -29.797 30.635 1 236.21 ? C5 I8P 502 C 1 
HETATM 6 C C6 I8P . . . H 2 40.708 -30.194 29.175 1 233.46 ? C6 I8P 502 C 1 
HETATM 7 O O11 I8P . . . H 2 39.181 -30.429 27.323 1 228.28 ? O11 I8P 502 C 1 
HETATM 8 O O12 I8P . . . H 2 39.392 -27.821 28.501 1 236.61 ? O12 I8P 502 C 1 
HETATM 9 O O13 I8P . . . H 2 37.85 -27.562 30.947 1 252.54 ? O13 I8P 502 C 1 
HETATM 10 O O14 I8P . . . H 2 40.007 -28.614 32.524 1 233.04 ? O14 I8P 502 C 1 
HETATM 11 O O15 I8P . . . H 2 42.272 -29.441 30.838 1 232.72 ? O15 I8P 502 C 1 
HETATM 12 O O16 I8P . . . H 2 41.232 -31.53 29.011 1 223.56 ? O16 I8P 502 C 1 
HETATM 13 O O21 I8P . . . H 2 38.731 -32.94 27.539 1 203.79 ? O21 I8P 502 C 1 
HETATM 14 O O22 I8P . . . H 2 39.07 -25.404 29.134 1 208.49 ? O22 I8P 502 C 1 
HETATM 15 O O23 I8P . . . H 2 35.699 -28.836 30.448 1 235.9 ? O23 I8P 502 C 1 
HETATM 16 O O24 I8P . . . H 2 38.014 -27.688 33.717 1 221.59 ? O24 I8P 502 C 1 
HETATM 17 O O25 I8P . . . H 2 43.089 -28.328 28.626 1 207.92 ? O25 I8P 502 C 1 
HETATM 18 O O26 I8P . . . H 2 42.914 -30.998 27.191 1 188.42 ? O26 I8P 502 C 1 
HETATM 19 O O31 I8P . . . H 2 37.485 -31.555 25.825 1 200.66 ? O31 I8P 502 C 1 
HETATM 20 O O32 I8P . . . H 2 39.866 -25.98 26.814 1 210.98 ? O32 I8P 502 C 1 
HETATM 21 O O33 I8P . . . H 2 35.743 -26.339 30.099 1 237.93 ? O33 I8P 502 C 1 
HETATM 22 O O34 I8P . . . H 2 39.929 -26.149 33.149 1 216.42 ? O34 I8P 502 C 1 
HETATM 23 O O35 I8P . . . H 2 44.614 -28.456 30.629 1 183.86 ? O35 I8P 502 C 1 
HETATM 24 O O36 I8P . . . H 2 41.716 -33.177 27.168 1 205.99 ? O36 I8P 502 C 1 
HETATM 25 O O41 I8P . . . H 2 39.929 -32.031 25.487 1 207.53 ? O41 I8P 502 C 1 
HETATM 26 O O42 I8P . . . H 2 37.499 -26.462 27.525 1 225.57 ? O42 I8P 502 C 1 
HETATM 27 O O43 I8P . . . H 2 35.787 -27.33 32.416 1 245.25 ? O43 I8P 502 C 1 
HETATM 28 O O44 I8P . . . H 2 40.166 -27.922 34.922 1 228.55 ? O44 I8P 502 C 1 
HETATM 29 O O45 I8P . . . H 2 42.662 -26.885 30.656 1 206.95 ? O45 I8P 502 C 1 
HETATM 30 O O46 I8P . . . H 2 43.463 -32.75 28.916 1 203.51 ? O46 I8P 502 C 1 
HETATM 31 O O51 I8P . . . H 2 42.265 -31.932 24.647 1 165.46 ? O51 I8P 502 C 1 
HETATM 32 O O55 I8P . . . H 2 43.647 -24.567 30.285 1 194.43 ? O55 I8P 502 C 1 
HETATM 33 O O61 I8P . . . H 2 41.222 -29.824 25.561 1 193.97 ? O61 I8P 502 C 1 
HETATM 34 O O65 I8P . . . H 2 41.16 -24.919 30.583 1 181.52 ? O65 I8P 502 C 1 
HETATM 35 O O71 I8P . . . H 2 40.424 -30.819 23.376 1 178.06 ? O71 I8P 502 C 1 
HETATM 36 O O75 I8P . . . H 2 42.276 -25.73 28.499 1 195.52 ? O75 I8P 502 C 1 
HETATM 37 P PA1 I8P . . . H 2 38.79 -31.814 26.58 1 216.79 ? PA1 I8P 502 C 1 
HETATM 38 P PA2 I8P . . . H 2 38.971 -26.369 27.944 1 223.42 ? PA2 I8P 502 C 1 
HETATM 39 P PA3 I8P . . . H 2 36.205 -27.477 30.948 1 243.73 ? PA3 I8P 502 C 1 
HETATM 40 P PA4 I8P . . . H 2 39.532 -27.52 33.585 1 226.17 ? PA4 I8P 502 C 1 
HETATM 41 P PA5 I8P . . . H 2 43.19 -28.281 30.099 1 211.72 ? PA5 I8P 502 C 1 
HETATM 42 P PA6 I8P . . . H 2 42.396 -32.143 28.072 1 206.13 ? PA6 I8P 502 C 1 
HETATM 43 P PB1 I8P . . . H 2 41.002 -31.071 24.773 1 186.46 ? PB1 I8P 502 C 1 
HETATM 44 P PB5 I8P . . . H 2 42.476 -25.444 29.995 1 201.57 ? PB5 I8P 502 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#