data_7MP9
#
_model_server_result.job_id            MVvFNI0dIK0CYMgQ6QaV9A 
_model_server_result.datetime_utc      '2024-11-05 23:26:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":609}' 
#
_entry.id    7MP9 
#
_exptl.entry_id    7MP9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.216 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMP PHOSPHORAMIDATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7MP9 
_cell.length_a            52.736 
_cell.length_b            52.736 
_cell.length_c            547.944 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -91.324 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 89 A GLN 204 1_555 A N SEP 90 A SEP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C SEP 90 A SEP 205 1_555 A N ASN 91 A ASN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C PHE 414 A PHE 529 1_555 A N TPO 415 A TPO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C TPO 415 A TPO 530 1_555 A N ARG 416 A ARG 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A O1P SEP 90 A SEP 205 1_555 B MG MG . A MG 601 10_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc2 B MG MG . A MG 601 1_555 J O1A AN2 . A AN2 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
#
_chem_comp.formula           'C10 H16 N6 O9 P2' 
_chem_comp.formula_weight    426.216 
_chem_comp.id                AN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMP PHOSPHORAMIDATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3B PB AN2 sing 13 n n 
N3B H3B1 AN2 sing 14 n n 
N3B H3B2 AN2 sing 15 n n 
PB O2B AN2 sing 16 n n 
PB O1B AN2 doub 17 n n 
PB O3A AN2 sing 18 n n 
O2B HO2B AN2 sing 19 n n 
O3A PA AN2 sing 20 n n 
PA O1A AN2 doub 21 n n 
PA O2A AN2 sing 22 n n 
PA O5' AN2 sing 23 n n 
O2A HO2A AN2 sing 24 n n 
O5' C5' AN2 sing 25 n n 
C5' C4' AN2 sing 26 n n 
C5' "H5'1" AN2 sing 27 n n 
C5' "H5'2" AN2 sing 28 n n 
C4' O4' AN2 sing 29 n n 
C4' C3' AN2 sing 30 n n 
C4' H4' AN2 sing 31 n n 
O4' C1' AN2 sing 32 n n 
C3' O3' AN2 sing 33 n n 
C3' C2' AN2 sing 34 n n 
C3' H3' AN2 sing 35 n n 
O3' HA AN2 sing 36 n n 
C2' O2' AN2 sing 37 n n 
C2' C1' AN2 sing 38 n n 
C2' H2' AN2 sing 39 n n 
O2' HB AN2 sing 40 n n 
C1' N9 AN2 sing 41 n n 
C1' H1' AN2 sing 42 n n 
N9 C8 AN2 sing 43 n y 
N9 C4 AN2 sing 44 n y 
C8 N7 AN2 doub 45 n y 
C8 H8 AN2 sing 46 n n 
N7 C5 AN2 sing 47 n y 
C5 C4 AN2 doub 48 n y 
C5 C6 AN2 sing 49 n y 
C4 N3 AN2 sing 50 n y 
N3 C2 AN2 doub 51 n y 
C2 N1 AN2 sing 52 n y 
C2 H2 AN2 sing 53 n n 
N1 C6 AN2 doub 54 n y 
C6 N6 AN2 sing 55 n n 
N6 H6N1 AN2 sing 56 n n 
N6 H6N2 AN2 sing 57 n n 
#
_atom_sites.entry_id                     7MP9 
_atom_sites.fract_transf_matrix[1][1]    0.018962 
_atom_sites.fract_transf_matrix[1][2]    0.010948 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021896 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 601 1 MG MG . 
C 3 SO4 A 1 602 2 SO4 SO4 . 
D 3 SO4 A 1 603 4 SO4 SO4 . 
E 3 SO4 A 1 604 5 SO4 SO4 . 
F 3 SO4 A 1 605 7 SO4 SO4 . 
G 4 PG4 A 1 606 1 PG4 PG4 . 
H 4 PG4 A 1 607 2 PG4 PG4 . 
I 4 PG4 A 1 608 3 PG4 PG4 . 
J 5 AN2 A 1 609 1 AN2 AN2 . 
K 6 HOH A 1 701 40 HOH HOH . 
K 6 HOH A 2 702 51 HOH HOH . 
K 6 HOH A 3 703 35 HOH HOH . 
K 6 HOH A 4 704 7 HOH HOH . 
K 6 HOH A 5 705 41 HOH HOH . 
K 6 HOH A 6 706 16 HOH HOH . 
K 6 HOH A 7 707 47 HOH HOH . 
K 6 HOH A 8 708 11 HOH HOH . 
K 6 HOH A 9 709 49 HOH HOH . 
K 6 HOH A 10 710 46 HOH HOH . 
K 6 HOH A 11 711 23 HOH HOH . 
K 6 HOH A 12 712 53 HOH HOH . 
K 6 HOH A 13 713 17 HOH HOH . 
K 6 HOH A 14 714 39 HOH HOH . 
K 6 HOH A 15 715 43 HOH HOH . 
K 6 HOH A 16 716 21 HOH HOH . 
K 6 HOH A 17 717 1 HOH HOH . 
K 6 HOH A 18 718 3 HOH HOH . 
K 6 HOH A 19 719 22 HOH HOH . 
K 6 HOH A 20 720 34 HOH HOH . 
K 6 HOH A 21 721 56 HOH HOH . 
K 6 HOH A 22 722 44 HOH HOH . 
K 6 HOH A 23 723 50 HOH HOH . 
K 6 HOH A 24 724 36 HOH HOH . 
K 6 HOH A 25 725 19 HOH HOH . 
K 6 HOH A 26 726 10 HOH HOH . 
K 6 HOH A 27 727 59 HOH HOH . 
K 6 HOH A 28 728 29 HOH HOH . 
K 6 HOH A 29 729 25 HOH HOH . 
K 6 HOH A 30 730 52 HOH HOH . 
K 6 HOH A 31 731 30 HOH HOH . 
K 6 HOH A 32 732 57 HOH HOH . 
K 6 HOH A 33 733 32 HOH HOH . 
K 6 HOH A 34 734 15 HOH HOH . 
K 6 HOH A 35 735 33 HOH HOH . 
K 6 HOH A 36 736 2 HOH HOH . 
K 6 HOH A 37 737 9 HOH HOH . 
K 6 HOH A 38 738 8 HOH HOH . 
K 6 HOH A 39 739 4 HOH HOH . 
K 6 HOH A 40 740 42 HOH HOH . 
K 6 HOH A 41 741 6 HOH HOH . 
K 6 HOH A 42 742 14 HOH HOH . 
K 6 HOH A 43 743 60 HOH HOH . 
K 6 HOH A 44 744 28 HOH HOH . 
K 6 HOH A 45 745 58 HOH HOH . 
K 6 HOH A 46 746 18 HOH HOH . 
K 6 HOH A 47 747 31 HOH HOH . 
K 6 HOH A 48 748 5 HOH HOH . 
K 6 HOH A 49 749 20 HOH HOH . 
K 6 HOH A 50 750 12 HOH HOH . 
K 6 HOH A 51 751 54 HOH HOH . 
K 6 HOH A 52 752 48 HOH HOH . 
K 6 HOH A 53 753 63 HOH HOH . 
K 6 HOH A 54 754 55 HOH HOH . 
K 6 HOH A 55 755 26 HOH HOH . 
K 6 HOH A 56 756 64 HOH HOH . 
K 6 HOH A 57 757 61 HOH HOH . 
K 6 HOH A 58 758 27 HOH HOH . 
K 6 HOH A 59 759 37 HOH HOH . 
K 6 HOH A 60 760 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3B AN2 . . . J 5 -31.948 15.044 -35.915 1 68.42 ? N3B AN2 609 A 1 
HETATM 2 P PB AN2 . . . J 5 -31.436 16.271 -34.793 1 90.64 ? PB AN2 609 A 1 
HETATM 3 O O2B AN2 . . . J 5 -32.608 17.221 -34.492 1 90.86 ? O2B AN2 609 A 1 
HETATM 4 O O1B AN2 . . . J 5 -30.275 17.081 -35.417 1 86.56 ? O1B AN2 609 A 1 
HETATM 5 O O3A AN2 . . . J 5 -30.914 15.567 -33.408 1 138.33 ? O3A AN2 609 A 1 
HETATM 6 P PA AN2 . . . J 5 -30.51 16.431 -32.04 1 88.36 ? PA AN2 609 A 1 
HETATM 7 O O1A AN2 . . . J 5 -29.137 17.093 -32.234 1 88.74 ? O1A AN2 609 A 1 
HETATM 8 O O2A AN2 . . . J 5 -30.469 15.484 -30.803 1 83.8 ? O2A AN2 609 A 1 
HETATM 9 O O5' AN2 . . . J 5 -31.654 17.635 -31.8 1 63.54 ? O5' AN2 609 A 1 
HETATM 10 C C5' AN2 . . . J 5 -31.314 18.75 -30.974 1 63.61 ? C5' AN2 609 A 1 
HETATM 11 C C4' AN2 . . . J 5 -32.599 19.165 -30.205 1 72.95 ? C4' AN2 609 A 1 
HETATM 12 O O4' AN2 . . . J 5 -33.456 18.207 -30.293 1 24.43 ? O4' AN2 609 A 1 
HETATM 13 C C3' AN2 . . . J 5 -32.331 19.29 -28.686 1 68.3 ? C3' AN2 609 A 1 
HETATM 14 O O3' AN2 . . . J 5 -31.916 20.539 -28.38 1 63.98 ? O3' AN2 609 A 1 
HETATM 15 C C2' AN2 . . . J 5 -33.704 19.037 -28.102 1 51.09 ? C2' AN2 609 A 1 
HETATM 16 O O2' AN2 . . . J 5 -34.513 20.305 -28.175 1 53.75 ? O2' AN2 609 A 1 
HETATM 17 C C1' AN2 . . . J 5 -34.243 18.136 -28.891 1 46.03 ? C1' AN2 609 A 1 
HETATM 18 N N9 AN2 . . . J 5 -34.119 16.793 -28.322 1 39.13 ? N9 AN2 609 A 1 
HETATM 19 C C8 AN2 . . . J 5 -33.36 15.819 -28.875 1 32.98 ? C8 AN2 609 A 1 
HETATM 20 N N7 AN2 . . . J 5 -33.471 14.713 -28.107 1 22.28 ? N7 AN2 609 A 1 
HETATM 21 C C5 AN2 . . . J 5 -34.309 15.006 -27.073 1 29.86 ? C5 AN2 609 A 1 
HETATM 22 C C4 AN2 . . . J 5 -34.708 16.287 -27.207 1 33.67 ? C4 AN2 609 A 1 
HETATM 23 N N3 AN2 . . . J 5 -35.56 16.836 -26.289 1 20.25 ? N3 AN2 609 A 1 
HETATM 24 C C2 AN2 . . . J 5 -36.009 16.08 -25.232 1 18.11 ? C2 AN2 609 A 1 
HETATM 25 N N1 AN2 . . . J 5 -35.603 14.783 -25.099 1 22.77 ? N1 AN2 609 A 1 
HETATM 26 C C6 AN2 . . . J 5 -34.769 14.244 -25.995 1 23.2 ? C6 AN2 609 A 1 
HETATM 27 N N6 AN2 . . . J 5 -34.523 12.855 -25.581 1 11.28 ? N6 AN2 609 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#