data_7MPF # _model_server_result.job_id jR-Wo1HvwH2VeMeIofp5Dg _model_server_result.datetime_utc '2024-11-13 21:48:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7MPF # _exptl.entry_id 7MPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.38 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MPF _cell.length_a 89.723 _cell.length_b 89.723 _cell.length_c 133.7 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc2 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc4 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc6 B MN MN . A MN 201 1_555 D O13 R1D . A R1D 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.04 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 R1D . A R1D 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.04 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 R1D . A R1D 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.255 ? metalc ? metalc9 B MN MN . A MN 201 1_555 D O15 R1D . A R1D 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.151 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O10 R1D . A R1D 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.101 ? metalc ? metalc11 C MN MN . A MN 202 1_555 D O10 R1D . A R1D 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 C MN MN . A MN 202 1_555 D O13 R1D . A R1D 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.645 ? metalc ? metalc13 C MN MN . A MN 202 1_555 D O13 R1D . A R1D 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.645 ? metalc ? metalc14 C MN MN . A MN 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc15 C MN MN . A MN 202 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? # _chem_comp.formula 'C21 H18 F3 N3 O5' _chem_comp.formula_weight 449.38 _chem_comp.id R1D _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C14 R1D doub 386 n n O13 C12 R1D sing 387 n n C14 C12 R1D sing 388 n n C14 N16 R1D sing 389 n n C12 C11 R1D doub 390 n n N16 C17 R1D sing 391 n n F26 C25 R1D sing 392 n n C11 C09 R1D sing 393 n n C11 N18 R1D sing 394 n n O10 C09 R1D doub 395 n n C17 N18 R1D doub 396 n n C17 C19 R1D sing 397 n n C09 N08 R1D sing 398 n n C19 C20 R1D doub 399 n y C19 C24 R1D sing 400 n y C25 C24 R1D sing 401 n n C25 F27 R1D sing 402 n n C25 F28 R1D sing 403 n n N08 C07 R1D sing 404 n n C20 C21 R1D sing 405 n y C24 C23 R1D doub 406 n y C07 C06 R1D sing 407 n n C21 C22 R1D doub 408 n y C23 C22 R1D sing 409 n y C06 C05 R1D sing 410 n n C04 C05 R1D doub 411 n y C04 C03 R1D sing 412 n y C05 C29 R1D sing 413 n y O02 C03 R1D sing 414 n n O02 C01 R1D sing 415 n n C03 C31 R1D doub 416 n y C29 C30 R1D doub 417 n y C31 C30 R1D sing 418 n y C31 O32 R1D sing 419 n n C01 H1 R1D sing 420 n n C01 H2 R1D sing 421 n n C01 H3 R1D sing 422 n n C04 H4 R1D sing 423 n n C06 H5 R1D sing 424 n n C06 H6 R1D sing 425 n n C07 H7 R1D sing 426 n n C07 H8 R1D sing 427 n n C20 H9 R1D sing 428 n n C21 H10 R1D sing 429 n n C22 H11 R1D sing 430 n n C23 H12 R1D sing 431 n n C29 H13 R1D sing 432 n n C30 H14 R1D sing 433 n n N08 H15 R1D sing 434 n n N16 H16 R1D sing 435 n n O13 H17 R1D sing 436 n n O32 H18 R1D sing 437 n n # _atom_sites.entry_id 7MPF _atom_sites.fract_transf_matrix[1][1] 0.011145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 R1D A 1 203 301 R1D 436 . E 4 QQ4 A 1 204 401 QQ4 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 6 HOH A 1 301 2 HOH HOH . G 6 HOH A 2 302 6 HOH HOH . G 6 HOH A 3 303 1 HOH HOH . G 6 HOH A 4 304 8 HOH HOH . G 6 HOH A 5 305 4 HOH HOH . G 6 HOH A 6 306 3 HOH HOH . G 6 HOH A 7 307 7 HOH HOH . G 6 HOH A 8 308 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 R1D . A . D 3 4.255 35.53 11.416 0.49 94.61 ? C01 R1D 203 A 1 HETATM 2 C C01 R1D . B . D 3 4.02 35.58 11.688 0.51 94.43 ? C01 R1D 203 A 1 HETATM 3 C C03 R1D . A . D 3 4.305 33.297 12.127 0.49 96.82 ? C03 R1D 203 A 1 HETATM 4 C C03 R1D . B . D 3 4.307 33.298 12.125 0.51 95.42 ? C03 R1D 203 A 1 HETATM 5 C C04 R1D . A . D 3 3.11 32.921 12.721 0.49 93.9 ? C04 R1D 203 A 1 HETATM 6 C C04 R1D . B . D 3 3.11 32.927 12.71 0.51 92.85 ? C04 R1D 203 A 1 HETATM 7 C C05 R1D . A . D 3 2.624 31.634 12.551 0.49 95.66 ? C05 R1D 203 A 1 HETATM 8 C C05 R1D . B . D 3 2.624 31.634 12.551 0.51 95.95 ? C05 R1D 203 A 1 HETATM 9 C C06 R1D . A . D 3 1.303 31.214 13.201 0.49 96.01 ? C06 R1D 203 A 1 HETATM 10 C C06 R1D . B . D 3 1.302 31.217 13.199 0.51 92.87 ? C06 R1D 203 A 1 HETATM 11 C C07 R1D . A . D 3 1.361 31.079 14.721 0.49 76.94 ? C07 R1D 203 A 1 HETATM 12 C C07 R1D . B . D 3 1.361 31.079 14.721 0.51 76.69 ? C07 R1D 203 A 1 HETATM 13 C C09 R1D . A . D 3 3.088 30.156 16.291 0.49 71.13 ? C09 R1D 203 A 1 HETATM 14 C C09 R1D . B . D 3 3.082 30.138 16.276 0.51 75.79 ? C09 R1D 203 A 1 HETATM 15 C C11 R1D . A . D 3 4.54 30.097 16.763 0.49 75.08 ? C11 R1D 203 A 1 HETATM 16 C C11 R1D . B . D 3 4.528 30.026 16.726 0.51 71.04 ? C11 R1D 203 A 1 HETATM 17 C C12 R1D . A . D 3 4.895 29.333 17.991 0.49 64.62 ? C12 R1D 203 A 1 HETATM 18 C C12 R1D . B . D 3 4.891 29.266 17.947 0.51 69.82 ? C12 R1D 203 A 1 HETATM 19 C C14 R1D . A . D 3 6.315 29.283 18.442 0.49 68.01 ? C14 R1D 203 A 1 HETATM 20 C C14 R1D . B . D 3 6.305 29.148 18.367 0.51 67.78 ? C14 R1D 203 A 1 HETATM 21 C C17 R1D . A . D 3 6.982 30.735 16.464 0.49 74.35 ? C17 R1D 203 A 1 HETATM 22 C C17 R1D . B . D 3 6.964 30.521 16.345 0.51 74.33 ? C17 R1D 203 A 1 HETATM 23 C C19 R1D . A . D 3 8.075 31.458 15.677 0.49 80.99 ? C19 R1D 203 A 1 HETATM 24 C C19 R1D . B . D 3 8.018 31.187 15.48 0.51 80.64 ? C19 R1D 203 A 1 HETATM 25 C C20 R1D . A . D 3 8.012 32.831 15.518 0.49 81.67 ? C20 R1D 203 A 1 HETATM 26 C C20 R1D . B . D 3 8.829 30.394 14.691 0.51 78.47 ? C20 R1D 203 A 1 HETATM 27 C C21 R1D . A . D 3 9 33.493 14.807 0.49 79.47 ? C21 R1D 203 A 1 HETATM 28 C C21 R1D . B . D 3 9.791 30.983 13.891 0.51 81.73 ? C21 R1D 203 A 1 HETATM 29 C C22 R1D . A . D 3 10.052 32.78 14.256 0.49 82.31 ? C22 R1D 203 A 1 HETATM 30 C C22 R1D . B . D 3 9.931 32.36 13.884 0.51 82.94 ? C22 R1D 203 A 1 HETATM 31 C C23 R1D . A . D 3 10.118 31.406 14.416 0.49 82.6 ? C23 R1D 203 A 1 HETATM 32 C C23 R1D . B . D 3 9.113 33.151 14.673 0.51 80.23 ? C23 R1D 203 A 1 HETATM 33 C C24 R1D . A . D 3 9.131 30.741 15.126 0.49 79.98 ? C24 R1D 203 A 1 HETATM 34 C C24 R1D . B . D 3 8.145 32.571 15.477 0.51 81.58 ? C24 R1D 203 A 1 HETATM 35 C C25 R1D . A . D 3 9.216 29.222 15.294 0.49 71.51 ? C25 R1D 203 A 1 HETATM 36 C C25 R1D . B . D 3 7.236 33.44 16.357 0.51 81.3 ? C25 R1D 203 A 1 HETATM 37 C C29 R1D . A . D 3 3.333 30.725 11.779 0.49 92.98 ? C29 R1D 203 A 1 HETATM 38 C C29 R1D . B . D 3 3.334 30.725 11.778 0.51 92.01 ? C29 R1D 203 A 1 HETATM 39 C C30 R1D . A . D 3 4.527 31.1 11.185 0.49 90.27 ? C30 R1D 203 A 1 HETATM 40 C C30 R1D . B . D 3 4.529 31.101 11.186 0.51 90.42 ? C30 R1D 203 A 1 HETATM 41 C C31 R1D . A . D 3 5.013 32.386 11.359 0.49 98.91 ? C31 R1D 203 A 1 HETATM 42 C C31 R1D . B . D 3 5.014 32.387 11.36 0.51 97.1 ? C31 R1D 203 A 1 HETATM 43 F F26 R1D . A . D 3 9.241 28.901 16.621 0.49 78.15 ? F26 R1D 203 A 1 HETATM 44 F F26 R1D . B . D 3 7.364 34.766 16.058 0.51 73.85 ? F26 R1D 203 A 1 HETATM 45 F F27 R1D . A . D 3 10.361 28.764 14.718 0.49 66.64 ? F27 R1D 203 A 1 HETATM 46 F F27 R1D . B . D 3 7.559 33.246 17.669 0.51 82.48 ? F27 R1D 203 A 1 HETATM 47 F F28 R1D . A . D 3 8.143 28.629 14.694 0.49 58.64 ? F28 R1D 203 A 1 HETATM 48 F F28 R1D . B . D 3 5.936 33.071 16.169 0.51 73.18 ? F28 R1D 203 A 1 HETATM 49 N N08 R1D . A . D 3 2.737 31.017 15.177 0.49 76.35 ? N08 R1D 203 A 1 HETATM 50 N N08 R1D . B . D 3 2.737 31.017 15.177 0.51 76.23 ? N08 R1D 203 A 1 HETATM 51 N N16 R1D . A . D 3 7.341 29.977 17.689 0.49 71.8 ? N16 R1D 203 A 1 HETATM 52 N N16 R1D . B . D 3 7.342 29.772 17.57 0.51 71.89 ? N16 R1D 203 A 1 HETATM 53 N N18 R1D . A . D 3 5.57 30.789 16.009 0.49 74.91 ? N18 R1D 203 A 1 HETATM 54 N N18 R1D . B . D 3 5.553 30.634 15.922 0.51 74.9 ? N18 R1D 203 A 1 HETATM 55 O O02 R1D . A . D 3 4.795 34.594 12.303 0.49 92.75 ? O02 R1D 203 A 1 HETATM 56 O O02 R1D . B . D 3 4.795 34.594 12.303 0.51 92.76 ? O02 R1D 203 A 1 HETATM 57 O O10 R1D . A . D 3 2.258 29.503 16.826 0.49 65.8 ? O10 R1D 203 A 1 HETATM 58 O O10 R1D . B . D 3 2.258 29.503 16.826 0.51 65.48 ? O10 R1D 203 A 1 HETATM 59 O O13 R1D . A . D 3 3.903 28.666 18.718 0.49 69.7 ? O13 R1D 203 A 1 HETATM 60 O O13 R1D . B . D 3 3.903 28.666 18.718 0.51 69.81 ? O13 R1D 203 A 1 HETATM 61 O O15 R1D . A . D 3 6.608 28.68 19.416 0.49 70.06 ? O15 R1D 203 A 1 HETATM 62 O O15 R1D . B . D 3 6.558 28.541 19.35 0.51 69.72 ? O15 R1D 203 A 1 HETATM 63 O O32 R1D . A . D 3 6.221 32.766 10.758 0.49 100.02 ? O32 R1D 203 A 1 HETATM 64 O O32 R1D . B . D 3 6.221 32.766 10.758 0.51 100.34 ? O32 R1D 203 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 64 #