data_7MQP # _model_server_result.job_id 6mm-E2ZRliCKx1PrR93Law _model_server_result.datetime_utc '2024-11-17 21:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7MQP # _exptl.entry_id 7MQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-[(2S)-4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl]-4'-methyl[1,1'-biphenyl]-4-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MQP _cell.length_a 66.681 _cell.length_b 66.681 _cell.length_c 213.752 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 35.625333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H25 N5 O' _chem_comp.formula_weight 399.488 _chem_comp.id ZM4 _chem_comp.mon_nstd_flag . _chem_comp.name "3'-[(2S)-4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl]-4'-methyl[1,1'-biphenyl]-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 ZM4 doub 380 n y C4 N3 ZM4 sing 381 n y C4 CBB ZM4 sing 382 n n C5 C6 ZM4 sing 383 n y C5 CAH ZM4 sing 384 n n C6 N1 ZM4 doub 385 n y C6 NAG ZM4 sing 386 n n N1 C2 ZM4 sing 387 n y N3 C2 ZM4 doub 388 n y CBC CBB ZM4 sing 389 n n C2 NBD ZM4 sing 390 n n CAH CAI ZM4 trip 391 n n CAI CAJ ZM4 sing 392 n n CAJ CAK ZM4 sing 393 n n CAJ CAL ZM4 sing 394 n n CAL CAM ZM4 doub 395 n y CAL CAQ ZM4 sing 396 n y CAM CAN ZM4 sing 397 n y CAQ CAP ZM4 doub 398 n y CAP CAO ZM4 sing 399 n y CAO CAN ZM4 doub 400 n y CAN CAS ZM4 sing 401 n n CAS CAT ZM4 doub 402 n y CAS CAX ZM4 sing 403 n y CAT CAU ZM4 sing 404 n y CAU CAV ZM4 doub 405 n y CAV CAY ZM4 sing 406 n n CAV CAW ZM4 sing 407 n y CAY OAZ ZM4 doub 408 n n CAY NBA ZM4 sing 409 n n CAW CAX ZM4 doub 410 n y CAQ CLAR ZM4 sing 411 n n CBC H1 ZM4 sing 412 n n CBC H2 ZM4 sing 413 n n CBC H3 ZM4 sing 414 n n CBB H4 ZM4 sing 415 n n CBB H5 ZM4 sing 416 n n NBD H6 ZM4 sing 417 n n NBD H7 ZM4 sing 418 n n NAG H8 ZM4 sing 419 n n NAG H9 ZM4 sing 420 n n CAJ H10 ZM4 sing 421 n n CAK H11 ZM4 sing 422 n n CAK H12 ZM4 sing 423 n n CAK H13 ZM4 sing 424 n n CAM H14 ZM4 sing 425 n n CLAR H15 ZM4 sing 426 n n CLAR H16 ZM4 sing 427 n n CLAR H17 ZM4 sing 428 n n CAP H18 ZM4 sing 429 n n CAO H19 ZM4 sing 430 n n CAT H20 ZM4 sing 431 n n CAU H21 ZM4 sing 432 n n NBA H22 ZM4 sing 433 n n NBA H23 ZM4 sing 434 n n CAW H24 ZM4 sing 435 n n CAX H25 ZM4 sing 436 n n # _atom_sites.entry_id 7MQP _atom_sites.fract_transf_matrix[1][1] 0.014997 _atom_sites.fract_transf_matrix[1][2] 0.008658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZM4 A 1 201 1 ZM4 DRG . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 3 SO4 A 1 204 3 SO4 SO4 . F 3 SO4 A 1 205 4 SO4 SO4 . G 3 SO4 A 1 206 5 SO4 SO4 . H 3 SO4 A 1 207 6 SO4 SO4 . I 3 SO4 A 1 208 8 SO4 SO4 . J 4 HOH A 1 301 57 HOH HOH . J 4 HOH A 2 302 44 HOH HOH . J 4 HOH A 3 303 25 HOH HOH . J 4 HOH A 4 304 55 HOH HOH . J 4 HOH A 5 305 6 HOH HOH . J 4 HOH A 6 306 46 HOH HOH . J 4 HOH A 7 307 22 HOH HOH . J 4 HOH A 8 308 26 HOH HOH . J 4 HOH A 9 309 43 HOH HOH . J 4 HOH A 10 310 41 HOH HOH . J 4 HOH A 11 311 13 HOH HOH . J 4 HOH A 12 312 37 HOH HOH . J 4 HOH A 13 313 23 HOH HOH . J 4 HOH A 14 314 12 HOH HOH . J 4 HOH A 15 315 45 HOH HOH . J 4 HOH A 16 316 42 HOH HOH . J 4 HOH A 17 317 3 HOH HOH . J 4 HOH A 18 318 20 HOH HOH . J 4 HOH A 19 319 36 HOH HOH . J 4 HOH A 20 320 8 HOH HOH . J 4 HOH A 21 321 52 HOH HOH . J 4 HOH A 22 322 48 HOH HOH . J 4 HOH A 23 323 49 HOH HOH . J 4 HOH A 24 324 51 HOH HOH . J 4 HOH A 25 325 32 HOH HOH . J 4 HOH A 26 326 7 HOH HOH . J 4 HOH A 27 327 34 HOH HOH . J 4 HOH A 28 328 9 HOH HOH . J 4 HOH A 29 329 17 HOH HOH . J 4 HOH A 30 330 2 HOH HOH . J 4 HOH A 31 331 18 HOH HOH . J 4 HOH A 32 332 5 HOH HOH . J 4 HOH A 33 333 30 HOH HOH . J 4 HOH A 34 334 1 HOH HOH . J 4 HOH A 35 335 28 HOH HOH . J 4 HOH A 36 336 33 HOH HOH . J 4 HOH A 37 337 38 HOH HOH . J 4 HOH A 38 338 14 HOH HOH . J 4 HOH A 39 339 35 HOH HOH . J 4 HOH A 40 340 19 HOH HOH . J 4 HOH A 41 341 39 HOH HOH . J 4 HOH A 42 342 27 HOH HOH . J 4 HOH A 43 343 31 HOH HOH . J 4 HOH A 44 344 4 HOH HOH . J 4 HOH A 45 345 47 HOH HOH . J 4 HOH A 46 346 10 HOH HOH . J 4 HOH A 47 347 29 HOH HOH . J 4 HOH A 48 348 50 HOH HOH . J 4 HOH A 49 349 56 HOH HOH . J 4 HOH A 50 350 54 HOH HOH . J 4 HOH A 51 351 24 HOH HOH . J 4 HOH A 52 352 53 HOH HOH . J 4 HOH A 53 353 21 HOH HOH . J 4 HOH A 54 354 11 HOH HOH . J 4 HOH A 55 355 15 HOH HOH . J 4 HOH A 56 356 40 HOH HOH . J 4 HOH A 57 357 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 ZM4 . . . B 2 -16.874 -25.131 7.788 1 55.96 ? C4 ZM4 201 A 1 HETATM 2 C C5 ZM4 . . . B 2 -16.694 -24.858 6.441 1 55.04 ? C5 ZM4 201 A 1 HETATM 3 C C6 ZM4 . . . B 2 -17.741 -24.264 5.733 1 53.01 ? C6 ZM4 201 A 1 HETATM 4 N N1 ZM4 . . . B 2 -18.828 -23.923 6.408 1 49.9 ? N1 ZM4 201 A 1 HETATM 5 N N3 ZM4 . . . B 2 -18.04 -24.765 8.378 1 53.6 ? N3 ZM4 201 A 1 HETATM 6 C CBC ZM4 . . . B 2 -16.222 -27.185 8.777 1 60.25 ? CBC ZM4 201 A 1 HETATM 7 C CBB ZM4 . . . B 2 -15.873 -25.739 8.632 1 58.04 ? CBB ZM4 201 A 1 HETATM 8 C C2 ZM4 . . . B 2 -19.018 -24.143 7.707 1 51.61 ? C2 ZM4 201 A 1 HETATM 9 N NBD ZM4 . . . B 2 -20.185 -23.768 8.291 1 50.62 ? NBD ZM4 201 A 1 HETATM 10 N NAG ZM4 . . . B 2 -17.601 -23.975 4.397 1 51.91 ? NAG ZM4 201 A 1 HETATM 11 C CAH ZM4 . . . B 2 -15.478 -25.245 5.704 1 59 ? CAH ZM4 201 A 1 HETATM 12 C CAI ZM4 . . . B 2 -14.574 -25.528 5.183 1 61.33 ? CAI ZM4 201 A 1 HETATM 13 C CAJ ZM4 . . . B 2 -13.285 -25.97 4.449 1 63.02 ? CAJ ZM4 201 A 1 HETATM 14 C CAK ZM4 . . . B 2 -13.675 -26.842 3.234 1 64.37 ? CAK ZM4 201 A 1 HETATM 15 C CAL ZM4 . . . B 2 -12.408 -26.756 5.294 1 65.71 ? CAL ZM4 201 A 1 HETATM 16 C CAM ZM4 . . . B 2 -12.907 -27.931 5.832 1 61.57 ? CAM ZM4 201 A 1 HETATM 17 C CAQ ZM4 . . . B 2 -11.036 -26.379 5.54 1 68.54 ? CAQ ZM4 201 A 1 HETATM 18 C CLAR ZM4 . . . B 2 -10.326 -24.878 4.76 1 83.77 0 CLAR ZM4 201 A 1 HETATM 19 C CAP ZM4 . . . B 2 -10.221 -27.17 6.341 1 77.59 ? CAP ZM4 201 A 1 HETATM 20 C CAO ZM4 . . . B 2 -10.756 -28.336 6.888 1 75.77 ? CAO ZM4 201 A 1 HETATM 21 C CAN ZM4 . . . B 2 -12.094 -28.688 6.676 1 74.65 ? CAN ZM4 201 A 1 HETATM 22 C CAS ZM4 . . . B 2 -12.569 -29.873 7.201 1 87.96 ? CAS ZM4 201 A 1 HETATM 23 C CAT ZM4 . . . B 2 -13.325 -30.678 6.33 1 85.42 ? CAT ZM4 201 A 1 HETATM 24 C CAU ZM4 . . . B 2 -13.831 -31.899 6.738 1 98.7 ? CAU ZM4 201 A 1 HETATM 25 C CAV ZM4 . . . B 2 -13.555 -32.331 8.036 1 129.6 ? CAV ZM4 201 A 1 HETATM 26 C CAY ZM4 . . . B 2 -14.109 -33.564 8.368 1 150.92 ? CAY ZM4 201 A 1 HETATM 27 O OAZ ZM4 . . . B 2 -15.273 -33.653 8.772 1 163.31 ? OAZ ZM4 201 A 1 HETATM 28 N NBA ZM4 . . . B 2 -13.337 -34.621 8.112 1 162.85 ? NBA ZM4 201 A 1 HETATM 29 C CAW ZM4 . . . B 2 -12.77 -31.549 8.936 1 106.41 ? CAW ZM4 201 A 1 HETATM 30 C CAX ZM4 . . . B 2 -12.265 -30.311 8.516 1 101.17 ? CAX ZM4 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #