data_7MRI # _model_server_result.job_id s2NthieFEMqZN6blEisbFQ _model_server_result.datetime_utc '2024-11-23 00:05:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7MRI # _exptl.entry_id 7MRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MRI _cell.length_a 59.25 _cell.length_b 59.25 _cell.length_c 92.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 18 A CYS 14 1_555 D CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? covale ? covale2 A SG CYS 21 A CYS 17 1_555 D CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale3 B SG CYS 18 C CYS 14 1_555 E CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? covale ? covale4 B SG CYS 21 C CYS 17 1_555 E CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? covale ? covale5 C SG CYS 18 E CYS 14 1_555 F CAB HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale6 C SG CYS 21 E CYS 17 1_555 F CAC HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc1 A NE2 HIS 22 A HIS 18 1_555 D FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc2 A SD MET 84 A MET 80 1_555 D FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 B NE2 HIS 22 C HIS 18 1_555 E FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc4 B SD MET 84 C MET 80 1_555 E FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 C NE2 HIS 22 E HIS 18 1_555 F FE HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc6 C SD MET 84 E MET 80 1_555 F FE HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 7MRI _atom_sites.fract_transf_matrix[1][1] 0.016878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEC A 1 201 203 HEC HEM . E 2 HEC C 1 201 204 HEC HEM . F 2 HEC E 1 201 205 HEC HEM . G 3 HOH A 1 301 89 HOH HOH . G 3 HOH A 2 302 14 HOH HOH . G 3 HOH A 3 303 8 HOH HOH . G 3 HOH A 4 304 38 HOH HOH . G 3 HOH A 5 305 49 HOH HOH . G 3 HOH A 6 306 72 HOH HOH . G 3 HOH A 7 307 86 HOH HOH . G 3 HOH A 8 308 25 HOH HOH . G 3 HOH A 9 309 65 HOH HOH . G 3 HOH A 10 310 29 HOH HOH . G 3 HOH A 11 311 88 HOH HOH . G 3 HOH A 12 312 9 HOH HOH . G 3 HOH A 13 313 32 HOH HOH . G 3 HOH A 14 314 1 HOH HOH . G 3 HOH A 15 315 19 HOH HOH . G 3 HOH A 16 316 11 HOH HOH . G 3 HOH A 17 317 17 HOH HOH . G 3 HOH A 18 318 36 HOH HOH . G 3 HOH A 19 319 16 HOH HOH . G 3 HOH A 20 320 59 HOH HOH . G 3 HOH A 21 321 50 HOH HOH . G 3 HOH A 22 322 64 HOH HOH . G 3 HOH A 23 323 78 HOH HOH . G 3 HOH A 24 324 20 HOH HOH . G 3 HOH A 25 325 76 HOH HOH . G 3 HOH A 26 326 57 HOH HOH . G 3 HOH A 27 327 24 HOH HOH . G 3 HOH A 28 328 44 HOH HOH . G 3 HOH A 29 329 30 HOH HOH . G 3 HOH A 30 330 6 HOH HOH . G 3 HOH A 31 331 74 HOH HOH . G 3 HOH A 32 332 40 HOH HOH . G 3 HOH A 33 333 81 HOH HOH . G 3 HOH A 34 334 69 HOH HOH . G 3 HOH A 35 335 58 HOH HOH . G 3 HOH A 36 336 47 HOH HOH . G 3 HOH A 37 337 70 HOH HOH . G 3 HOH A 38 338 84 HOH HOH . H 3 HOH C 1 301 23 HOH HOH . H 3 HOH C 2 302 79 HOH HOH . H 3 HOH C 3 303 63 HOH HOH . H 3 HOH C 4 304 41 HOH HOH . H 3 HOH C 5 305 43 HOH HOH . H 3 HOH C 6 306 2 HOH HOH . H 3 HOH C 7 307 35 HOH HOH . H 3 HOH C 8 308 4 HOH HOH . H 3 HOH C 9 309 3 HOH HOH . H 3 HOH C 10 310 31 HOH HOH . H 3 HOH C 11 311 7 HOH HOH . H 3 HOH C 12 312 60 HOH HOH . H 3 HOH C 13 313 21 HOH HOH . H 3 HOH C 14 314 10 HOH HOH . H 3 HOH C 15 315 46 HOH HOH . H 3 HOH C 16 316 48 HOH HOH . H 3 HOH C 17 317 75 HOH HOH . H 3 HOH C 18 318 15 HOH HOH . H 3 HOH C 19 319 5 HOH HOH . H 3 HOH C 20 320 66 HOH HOH . H 3 HOH C 21 321 18 HOH HOH . H 3 HOH C 22 322 51 HOH HOH . H 3 HOH C 23 323 13 HOH HOH . H 3 HOH C 24 324 56 HOH HOH . H 3 HOH C 25 325 87 HOH HOH . H 3 HOH C 26 326 54 HOH HOH . H 3 HOH C 27 327 45 HOH HOH . H 3 HOH C 28 328 22 HOH HOH . H 3 HOH C 29 329 52 HOH HOH . H 3 HOH C 30 330 61 HOH HOH . H 3 HOH C 31 331 26 HOH HOH . H 3 HOH C 32 332 68 HOH HOH . H 3 HOH C 33 333 28 HOH HOH . H 3 HOH C 34 334 34 HOH HOH . H 3 HOH C 35 335 83 HOH HOH . H 3 HOH C 36 336 77 HOH HOH . I 3 HOH E 1 301 90 HOH HOH . I 3 HOH E 2 302 33 HOH HOH . I 3 HOH E 3 303 12 HOH HOH . I 3 HOH E 4 304 92 HOH HOH . I 3 HOH E 5 305 39 HOH HOH . I 3 HOH E 6 306 91 HOH HOH . I 3 HOH E 7 307 67 HOH HOH . I 3 HOH E 8 308 85 HOH HOH . I 3 HOH E 9 309 37 HOH HOH . I 3 HOH E 10 310 42 HOH HOH . I 3 HOH E 11 311 27 HOH HOH . I 3 HOH E 12 312 55 HOH HOH . I 3 HOH E 13 313 80 HOH HOH . I 3 HOH E 14 314 73 HOH HOH . I 3 HOH E 15 315 53 HOH HOH . I 3 HOH E 16 316 62 HOH HOH . I 3 HOH E 17 317 71 HOH HOH . I 3 HOH E 18 318 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 2 -53.145 8.212 -0.213 1 18.63 ? FE HEC 201 C 1 HETATM 2 C CHA HEC . . . E 2 -55.349 5.661 -0.023 1 16.25 ? CHA HEC 201 C 1 HETATM 3 C CHB HEC . . . E 2 -55.397 10.369 1.094 1 16.43 ? CHB HEC 201 C 1 HETATM 4 C CHC HEC . . . E 2 -50.646 10.65 0.037 1 18.38 ? CHC HEC 201 C 1 HETATM 5 C CHD HEC . . . E 2 -51.107 6.436 -2.154 1 17.56 ? CHD HEC 201 C 1 HETATM 6 N NA HEC . . . E 2 -55.018 8.096 0.415 1 17.25 ? NA HEC 201 C 1 HETATM 7 C C1A HEC . . . E 2 -55.724 6.896 0.477 1 16.98 ? C1A HEC 201 C 1 HETATM 8 C C2A HEC . . . E 2 -56.92 7.111 1.184 1 15.83 ? C2A HEC 201 C 1 HETATM 9 C C3A HEC . . . E 2 -56.949 8.43 1.518 1 16 ? C3A HEC 201 C 1 HETATM 10 C C4A HEC . . . E 2 -55.765 9.042 1.033 1 16.36 ? C4A HEC 201 C 1 HETATM 11 C CMA HEC . . . E 2 -58.051 9.126 2.311 1 16.11 ? CMA HEC 201 C 1 HETATM 12 C CAA HEC . . . E 2 -57.951 6.051 1.479 1 16.18 ? CAA HEC 201 C 1 HETATM 13 C CBA HEC . . . E 2 -59.023 6.237 0.38 1 18.12 ? CBA HEC 201 C 1 HETATM 14 C CGA HEC . . . E 2 -60.234 5.344 0.5 1 20.66 ? CGA HEC 201 C 1 HETATM 15 O O1A HEC . . . E 2 -60.5 4.708 1.537 1 23.33 ? O1A HEC 201 C 1 HETATM 16 O O2A HEC . . . E 2 -61.038 5.255 -0.451 1 21.45 ? O2A HEC 201 C 1 HETATM 17 N NB HEC . . . E 2 -53.04 10.167 0.42 1 16.56 ? NB HEC 201 C 1 HETATM 18 C C1B HEC . . . E 2 -54.081 10.826 0.886 1 17.21 ? C1B HEC 201 C 1 HETATM 19 C C2B HEC . . . E 2 -53.7 12.169 1.199 1 18.15 ? C2B HEC 201 C 1 HETATM 20 C C3B HEC . . . E 2 -52.365 12.263 0.942 1 18.89 ? C3B HEC 201 C 1 HETATM 21 C C4B HEC . . . E 2 -51.96 10.933 0.42 1 17.97 ? C4B HEC 201 C 1 HETATM 22 C CMB HEC . . . E 2 -54.56 13.292 1.749 1 16.47 ? CMB HEC 201 C 1 HETATM 23 C CAB HEC . . . E 2 -51.569 13.499 1.143 1 21.1 ? CAB HEC 201 C 1 HETATM 24 C CBB HEC . . . E 2 -51.311 13.787 2.435 1 20.46 ? CBB HEC 201 C 1 HETATM 25 N NC HEC . . . E 2 -51.202 8.501 -0.888 1 18.03 ? NC HEC 201 C 1 HETATM 26 C C1C HEC . . . E 2 -50.346 9.566 -0.722 1 17.77 ? C1C HEC 201 C 1 HETATM 27 C C2C HEC . . . E 2 -49.176 9.383 -1.457 1 17.78 ? C2C HEC 201 C 1 HETATM 28 C C3C HEC . . . E 2 -49.322 8.146 -2.103 1 19.42 ? C3C HEC 201 C 1 HETATM 29 C C4C HEC . . . E 2 -50.599 7.611 -1.726 1 18.28 ? C4C HEC 201 C 1 HETATM 30 C CMC HEC . . . E 2 -48.003 10.321 -1.573 1 17.65 ? CMC HEC 201 C 1 HETATM 31 C CAC HEC . . . E 2 -48.331 7.557 -3.07 1 23.13 ? CAC HEC 201 C 1 HETATM 32 C CBC HEC . . . E 2 -47.208 6.954 -2.606 1 23.08 ? CBC HEC 201 C 1 HETATM 33 N ND HEC . . . E 2 -53.214 6.47 -0.935 1 16.71 ? ND HEC 201 C 1 HETATM 34 C C1D HEC . . . E 2 -52.31 5.89 -1.715 1 16.56 ? C1D HEC 201 C 1 HETATM 35 C C2D HEC . . . E 2 -52.697 4.472 -2.034 1 16.51 ? C2D HEC 201 C 1 HETATM 36 C C3D HEC . . . E 2 -53.879 4.269 -1.421 1 15.84 ? C3D HEC 201 C 1 HETATM 37 C C4D HEC . . . E 2 -54.176 5.535 -0.73 1 16.54 ? C4D HEC 201 C 1 HETATM 38 C CMD HEC . . . E 2 -51.946 3.451 -2.889 1 15.26 ? CMD HEC 201 C 1 HETATM 39 C CAD HEC . . . E 2 -54.681 3.007 -1.41 1 15.74 ? CAD HEC 201 C 1 HETATM 40 C CBD HEC . . . E 2 -54.223 2.223 -0.149 1 16.17 ? CBD HEC 201 C 1 HETATM 41 C CGD HEC . . . E 2 -54.654 0.769 0.089 1 17.66 ? CGD HEC 201 C 1 HETATM 42 O O1D HEC . . . E 2 -55.538 0.233 -0.668 1 18.32 ? O1D HEC 201 C 1 HETATM 43 O O2D HEC . . . E 2 -54.17 0.093 1.076 1 16.32 ? O2D HEC 201 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #