data_7MRZ # _model_server_result.job_id 4gLaKpOR8RZikp4DmkuoBg _model_server_result.datetime_utc '2024-11-28 06:44:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7MRZ # _exptl.entry_id 7MRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MRZ _cell.length_a 68.261 _cell.length_b 68.261 _cell.length_c 990.38 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -165.063333 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 304 1_555 A SG CYS 16 A CYS 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 15 A CYS 313 1_555 A SG CYS 74 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 43 A CYS 341 1_555 A SG CYS 106 A CYS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 47 A CYS 345 1_555 A SG CYS 108 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 11 C CYS 29 1_555 B SG CYS 41 C CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 31 C CYS 49 1_555 B SG CYS 59 C CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 B SG CYS 66 C CYS 84 1_555 B SG CYS 85 C CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 72 C CYS 90 1_555 B SG CYS 84 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 86 C CYS 104 1_555 B SG CYS 91 C CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf10 B SG CYS 144 C CYS 1034 1_555 B SG CYS 162 C CYS 1052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 146 C CYS 1036 1_555 B SG CYS 149 C CYS 1039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 B SG CYS 156 C CYS 1046 1_555 B SG CYS 179 C CYS 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 B SG CYS 194 C CYS 1084 1_555 B SG CYS 205 C CYS 1095 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf14 B SG CYS 206 C CYS 1096 1_555 B SG CYS 211 C CYS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf15 C SG CYS 22 X CYS 22 1_555 C SG CYS 97 X CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 C SG CYS 146 X CYS 146 1_555 C SG CYS 202 X CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf17 C SG CYS 222 X CYS 222 1_555 D SG CYS 221 Y CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 D SG CYS 23 Y CYS 245 1_555 D SG CYS 94 Y CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf19 D SG CYS 141 Y CYS 363 1_555 D SG CYS 201 Y CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 47 C ASN 65 1_555 E C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MRZ _atom_sites.fract_transf_matrix[1][1] 0.01465 _atom_sites.fract_transf_matrix[1][2] 0.008458 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG C 1 301 121 NAG NAG . F 6 SO4 X 1 301 301 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 -19.905 -19.526 -45.063 1 115.82 ? C1 NAG 301 C 1 HETATM 2 C C2 NAG . . . E 5 -19.248 -18.239 -44.576 1 114.12 ? C2 NAG 301 C 1 HETATM 3 C C3 NAG . . . E 5 -19.149 -18.244 -43.057 1 115.79 ? C3 NAG 301 C 1 HETATM 4 C C4 NAG . . . E 5 -20.543 -18.415 -42.461 1 121.2 ? C4 NAG 301 C 1 HETATM 5 C C5 NAG . . . E 5 -21.226 -19.661 -43.029 1 115.12 ? C5 NAG 301 C 1 HETATM 6 C C6 NAG . . . E 5 -22.676 -19.768 -42.611 1 122.48 ? C6 NAG 301 C 1 HETATM 7 C C7 NAG . . . E 5 -16.83 -18.695 -45.068 1 111.11 ? C7 NAG 301 C 1 HETATM 8 C C8 NAG . . . E 5 -16.882 -19.882 -44.153 1 109.42 ? C8 NAG 301 C 1 HETATM 9 N N2 NAG . . . E 5 -17.959 -17.98 -45.207 1 111.94 ? N2 NAG 301 C 1 HETATM 10 O O3 NAG . . . E 5 -18.567 -17.027 -42.604 1 105.25 ? O3 NAG 301 C 1 HETATM 11 O O4 NAG . . . E 5 -20.452 -18.537 -41.046 1 121.78 ? O4 NAG 301 C 1 HETATM 12 O O5 NAG . . . E 5 -21.215 -19.652 -44.467 1 117.39 ? O5 NAG 301 C 1 HETATM 13 O O6 NAG . . . E 5 -23.482 -20.315 -43.646 1 126.03 ? O6 NAG 301 C 1 HETATM 14 O O7 NAG . . . E 5 -15.801 -18.382 -45.658 1 101.55 ? O7 NAG 301 C 1 HETATM 15 H H2 NAG . . . E 5 -19.83 -17.5 -44.836 1 137.08 ? H2 NAG 301 C 1 HETATM 16 H H3 NAG . . . E 5 -18.576 -18.98 -42.771 1 139.09 ? H3 NAG 301 C 1 HETATM 17 H H4 NAG . . . E 5 -21.08 -17.631 -42.687 1 145.58 ? H4 NAG 301 C 1 HETATM 18 H H5 NAG . . . E 5 -20.731 -20.446 -42.728 1 138.28 ? H5 NAG 301 C 1 HETATM 19 H H61 NAG . . . E 5 -23.009 -18.879 -42.385 1 147.11 ? H61 NAG 301 C 1 HETATM 20 H H62 NAG . . . E 5 -22.739 -20.342 -41.823 1 147.11 ? H62 NAG 301 C 1 HETATM 21 H H81 NAG . . . E 5 -16.144 -20.485 -44.36 1 131.44 ? H81 NAG 301 C 1 HETATM 22 H H82 NAG . . . E 5 -17.73 -20.35 -44.276 1 131.44 ? H82 NAG 301 C 1 HETATM 23 H H83 NAG . . . E 5 -16.808 -19.582 -43.227 1 131.44 ? H83 NAG 301 C 1 HETATM 24 H HN2 NAG . . . E 5 -17.914 -17.253 -45.756 1 134.46 ? HN2 NAG 301 C 1 HETATM 25 H HO3 NAG . . . E 5 -18.431 -16.49 -43.297 1 126.44 ? HO3 NAG 301 C 1 HETATM 26 H HO4 NAG . . . E 5 -21.196 -18.235 -40.668 1 146.27 ? HO4 NAG 301 C 1 HETATM 27 H HO6 NAG . . . E 5 -22.961 -20.616 -44.298 1 151.37 ? HO6 NAG 301 C 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #