data_7MSN
#
_model_server_result.job_id            OCI7Du8oeklGMzv3x_gZrg 
_model_server_result.datetime_utc      '2024-10-18 16:20:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7msn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    7MSN 
#
_exptl.entry_id    7MSN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              566.302 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE-GLUCOSE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MSN 
_cell.length_a            108.73 
_cell.length_b            108.73 
_cell.length_c            210.697 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MSN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H24 N2 O17 P2' 
_chem_comp.formula_weight    566.302 
_chem_comp.id                UPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE-GLUCOSE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UPG sing 356 n n 
N1 C6 UPG sing 357 n n 
N1 C1C UPG sing 358 n n 
C2 N3 UPG sing 359 n n 
C2 O2 UPG doub 360 n n 
N3 C4 UPG sing 361 n n 
N3 HN3 UPG sing 362 n n 
C4 C5 UPG sing 363 n n 
C4 O4 UPG doub 364 n n 
C5 C6 UPG doub 365 n n 
C5 H5 UPG sing 366 n n 
C6 H6 UPG sing 367 n n 
C1C C2C UPG sing 368 n n 
C1C O4C UPG sing 369 n n 
C1C H1C UPG sing 370 n n 
C2C O2C UPG sing 371 n n 
C2C C3C UPG sing 372 n n 
C2C H2C UPG sing 373 n n 
O2C HO2C UPG sing 374 n n 
C3C C4C UPG sing 375 n n 
C3C O3C UPG sing 376 n n 
C3C H3C UPG sing 377 n n 
C4C O4C UPG sing 378 n n 
C4C C5C UPG sing 379 n n 
C4C H4C UPG sing 380 n n 
O3C HO3C UPG sing 381 n n 
C5C O5C UPG sing 382 n n 
C5C H5C1 UPG sing 383 n n 
C5C H5C2 UPG sing 384 n n 
O5C PA UPG sing 385 n n 
PA O1A UPG doub 386 n n 
PA O2A UPG sing 387 n n 
PA O3A UPG sing 388 n n 
O2A HOA2 UPG sing 389 n n 
O3A PB UPG sing 390 n n 
PB O1B UPG doub 391 n n 
PB O2B UPG sing 392 n n 
PB O3B UPG sing 393 n n 
O2B HOB2 UPG sing 394 n n 
O3B C1' UPG sing 395 n n 
C1' C2' UPG sing 396 n n 
C1' O5' UPG sing 397 n n 
C1' H1' UPG sing 398 n n 
C2' C3' UPG sing 399 n n 
C2' O2' UPG sing 400 n n 
C2' H2' UPG sing 401 n n 
C3' C4' UPG sing 402 n n 
C3' O3' UPG sing 403 n n 
C3' H3' UPG sing 404 n n 
C4' C5' UPG sing 405 n n 
C4' O4' UPG sing 406 n n 
C4' H4' UPG sing 407 n n 
C5' C6' UPG sing 408 n n 
C5' O5' UPG sing 409 n n 
C5' H5' UPG sing 410 n n 
C6' O6' UPG sing 411 n n 
C6' "H6'1" UPG sing 412 n n 
C6' "H6'2" UPG sing 413 n n 
O2' HO2' UPG sing 414 n n 
O3' HO3' UPG sing 415 n n 
O4' HO4' UPG sing 416 n n 
O6' HO6' UPG sing 417 n n 
#
_atom_sites.entry_id                     7MSN 
_atom_sites.fract_transf_matrix[1][1]    0.009197 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004746 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UPG A 1 500 500 UPG UPG . 
D 2 UPG B 1 500 500 UPG UPG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UPG . . . C 2 18.342 -4.143 -42.614 1 68.15 ? N1 UPG 500 A 1 
HETATM 2 C C2 UPG . . . C 2 18.081 -3.824 -43.889 1 71.16 ? C2 UPG 500 A 1 
HETATM 3 N N3 UPG . . . C 2 18.693 -4.408 -44.907 1 71.33 ? N3 UPG 500 A 1 
HETATM 4 C C4 UPG . . . C 2 19.592 -5.333 -44.713 1 72.66 ? C4 UPG 500 A 1 
HETATM 5 C C5 UPG . . . C 2 19.907 -5.705 -43.394 1 68.15 ? C5 UPG 500 A 1 
HETATM 6 C C6 UPG . . . C 2 19.243 -5.072 -42.333 1 68 ? C6 UPG 500 A 1 
HETATM 7 O O2 UPG . . . C 2 17.27 -2.992 -44.141 1 71.57 ? O2 UPG 500 A 1 
HETATM 8 O O4 UPG . . . C 2 20.209 -5.925 -45.815 1 76.37 ? O4 UPG 500 A 1 
HETATM 9 C C1C UPG . . . C 2 17.591 -3.419 -41.547 1 64.61 ? C1C UPG 500 A 1 
HETATM 10 C C2C UPG . . . C 2 17.503 -4.088 -40.118 1 67.81 ? C2C UPG 500 A 1 
HETATM 11 O O2C UPG . . . C 2 16.409 -4.792 -39.983 1 68.65 ? O2C UPG 500 A 1 
HETATM 12 C C3C UPG . . . C 2 17.443 -2.863 -39.134 1 66.37 ? C3C UPG 500 A 1 
HETATM 13 C C4C UPG . . . C 2 18.192 -1.982 -39.701 1 62.16 ? C4C UPG 500 A 1 
HETATM 14 O O4C UPG . . . C 2 18.153 -2.286 -41.335 1 64.57 ? O4C UPG 500 A 1 
HETATM 15 O O3C UPG . . . C 2 16.051 -2.368 -38.909 1 61.39 ? O3C UPG 500 A 1 
HETATM 16 C C5C UPG . . . C 2 19.635 -2.181 -39.326 1 59.5 ? C5C UPG 500 A 1 
HETATM 17 O O5C UPG . . . C 2 19.686 -2.649 -37.977 1 62.58 ? O5C UPG 500 A 1 
HETATM 18 P PA UPG . . . C 2 20.507 -4.041 -37.636 1 72.68 ? PA UPG 500 A 1 
HETATM 19 O O1A UPG . . . C 2 20.303 -5.147 -38.621 1 62.97 ? O1A UPG 500 A 1 
HETATM 20 O O2A UPG . . . C 2 20.074 -4.376 -36.228 1 76.08 ? O2A UPG 500 A 1 
HETATM 21 O O3A UPG . . . C 2 22.148 -3.839 -37.709 1 67.75 ? O3A UPG 500 A 1 
HETATM 22 P PB UPG . . . C 2 23 -3.114 -36.478 1 67.64 ? PB UPG 500 A 1 
HETATM 23 O O1B UPG . . . C 2 24.473 -3.35 -36.805 1 55.45 ? O1B UPG 500 A 1 
HETATM 24 O O2B UPG . . . C 2 22.548 -3.689 -35.13 1 71.81 ? O2B UPG 500 A 1 
HETATM 25 O O3B UPG . . . C 2 22.568 -1.492 -36.46 1 64 ? O3B UPG 500 A 1 
HETATM 26 C C1' UPG . . . C 2 23.519 -0.465 -36.503 1 61.52 ? C1' UPG 500 A 1 
HETATM 27 C C2' UPG . . . C 2 22.744 0.801 -36.39 1 60.93 ? C2' UPG 500 A 1 
HETATM 28 C C3' UPG . . . C 2 21.961 1.053 -37.585 1 62.87 ? C3' UPG 500 A 1 
HETATM 29 C C4' UPG . . . C 2 22.742 1.015 -38.825 1 55.38 ? C4' UPG 500 A 1 
HETATM 30 C C5' UPG . . . C 2 23.666 -0.238 -39.028 1 53.38 ? C5' UPG 500 A 1 
HETATM 31 C C6' UPG . . . C 2 24.645 -0.043 -40.023 1 54.89 ? C6' UPG 500 A 1 
HETATM 32 O O2' UPG . . . C 2 21.792 0.589 -35.282 1 68.42 ? O2' UPG 500 A 1 
HETATM 33 O O3' UPG . . . C 2 21.283 2.378 -37.479 1 65.66 ? O3' UPG 500 A 1 
HETATM 34 O O4' UPG . . . C 2 21.746 0.977 -39.858 1 56.64 ? O4' UPG 500 A 1 
HETATM 35 O O5' UPG . . . C 2 24.352 -0.556 -37.702 1 62.7 ? O5' UPG 500 A 1 
HETATM 36 O O6' UPG . . . C 2 25.361 1.136 -39.882 1 52.43 ? O6' UPG 500 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#