data_7MSU # _model_server_result.job_id w3cP4tmas3DlP35AoYjlXw _model_server_result.datetime_utc '2025-07-05 03:03:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7msu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7MSU # _exptl.entry_id 7MSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MSU _cell.length_a 52.1 _cell.length_b 52.1 _cell.length_c 112.284 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 402 1_555 E O1A ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 C MG MG . A MG 402 1_555 E O1G ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 C MG MG . A MG 402 1_555 E O1B ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 C MG MG . A MG 402 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 C MG MG . A MG 402 1_555 F O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc7 D MG MG . A MG 403 1_555 F O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc8 D MG MG . A MG 403 1_555 F O HOH . A HOH 520 5_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 522 5_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc12 D MG MG . A MG 403 1_555 F O HOH . A HOH 544 5_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7MSU _atom_sites.fract_transf_matrix[1][1] 0.019194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 401 EDO EDO . C 3 MG A 1 402 1 MG MG . D 3 MG A 1 403 2 MG MG . E 4 ATP A 1 404 1 ATP ATP . F 5 HOH A 1 501 9 HOH HOH . F 5 HOH A 2 502 3 HOH HOH . F 5 HOH A 3 503 10 HOH HOH . F 5 HOH A 4 504 49 HOH HOH . F 5 HOH A 5 505 23 HOH HOH . F 5 HOH A 6 506 25 HOH HOH . F 5 HOH A 7 507 30 HOH HOH . F 5 HOH A 8 508 1 HOH HOH . F 5 HOH A 9 509 17 HOH HOH . F 5 HOH A 10 510 19 HOH HOH . F 5 HOH A 11 511 16 HOH HOH . F 5 HOH A 12 512 24 HOH HOH . F 5 HOH A 13 513 12 HOH HOH . F 5 HOH A 14 514 15 HOH HOH . F 5 HOH A 15 515 20 HOH HOH . F 5 HOH A 16 516 39 HOH HOH . F 5 HOH A 17 517 14 HOH HOH . F 5 HOH A 18 518 7 HOH HOH . F 5 HOH A 19 519 31 HOH HOH . F 5 HOH A 20 520 2 HOH HOH . F 5 HOH A 21 521 4 HOH HOH . F 5 HOH A 22 522 46 HOH HOH . F 5 HOH A 23 523 5 HOH HOH . F 5 HOH A 24 524 13 HOH HOH . F 5 HOH A 25 525 6 HOH HOH . F 5 HOH A 26 526 21 HOH HOH . F 5 HOH A 27 527 34 HOH HOH . F 5 HOH A 28 528 22 HOH HOH . F 5 HOH A 29 529 54 HOH HOH . F 5 HOH A 30 530 33 HOH HOH . F 5 HOH A 31 531 37 HOH HOH . F 5 HOH A 32 532 11 HOH HOH . F 5 HOH A 33 533 40 HOH HOH . F 5 HOH A 34 534 8 HOH HOH . F 5 HOH A 35 535 29 HOH HOH . F 5 HOH A 36 536 18 HOH HOH . F 5 HOH A 37 537 47 HOH HOH . F 5 HOH A 38 538 43 HOH HOH . F 5 HOH A 39 539 36 HOH HOH . F 5 HOH A 40 540 48 HOH HOH . F 5 HOH A 41 541 27 HOH HOH . F 5 HOH A 42 542 56 HOH HOH . F 5 HOH A 43 543 44 HOH HOH . F 5 HOH A 44 544 53 HOH HOH . F 5 HOH A 45 545 38 HOH HOH . F 5 HOH A 46 546 32 HOH HOH . F 5 HOH A 47 547 55 HOH HOH . F 5 HOH A 48 548 45 HOH HOH . F 5 HOH A 49 549 35 HOH HOH . F 5 HOH A 50 550 26 HOH HOH . F 5 HOH A 51 551 28 HOH HOH . F 5 HOH A 52 552 42 HOH HOH . F 5 HOH A 53 553 50 HOH HOH . F 5 HOH A 54 554 52 HOH HOH . F 5 HOH A 55 555 57 HOH HOH . F 5 HOH A 56 556 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 -2.109 -9.101 2.679 1 28.38 ? PG ATP 404 A 1 HETATM 2 O O1G ATP . . . E 4 -1.602 -9.987 3.765 1 32.85 ? O1G ATP 404 A 1 HETATM 3 O O2G ATP . . . E 4 -1.849 -9.64 1.267 1 31.28 ? O2G ATP 404 A 1 HETATM 4 O O3G ATP . . . E 4 -1.597 -7.659 2.777 1 35.88 ? O3G ATP 404 A 1 HETATM 5 P PB ATP . . . E 4 -4.848 -9.012 3.848 1 29.59 ? PB ATP 404 A 1 HETATM 6 O O1B ATP . . . E 4 -4.299 -9.095 5.217 1 30.6 ? O1B ATP 404 A 1 HETATM 7 O O2B ATP . . . E 4 -5.786 -7.839 3.567 1 28.23 ? O2B ATP 404 A 1 HETATM 8 O O3B ATP . . . E 4 -3.696 -8.968 2.769 1 28.95 ? O3B ATP 404 A 1 HETATM 9 P PA ATP . . . E 4 -5.32 -11.903 3.458 1 24.76 ? PA ATP 404 A 1 HETATM 10 O O1A ATP . . . E 4 -4.089 -12.2 4.217 1 23.6 ? O1A ATP 404 A 1 HETATM 11 O O2A ATP . . . E 4 -5.332 -12.383 2.008 1 20.4 ? O2A ATP 404 A 1 HETATM 12 O O3A ATP . . . E 4 -5.618 -10.344 3.44 1 29.89 ? O3A ATP 404 A 1 HETATM 13 O O5' ATP . . . E 4 -6.594 -12.479 4.193 1 22.61 ? O5' ATP 404 A 1 HETATM 14 C C5' ATP . . . E 4 -6.643 -12.583 5.632 1 20.58 ? C5' ATP 404 A 1 HETATM 15 C C4' ATP . . . E 4 -8.063 -12.811 6.081 1 20.51 ? C4' ATP 404 A 1 HETATM 16 O O4' ATP . . . E 4 -8.795 -11.6 5.79 1 20.15 ? O4' ATP 404 A 1 HETATM 17 C C3' ATP . . . E 4 -8.738 -13.896 5.24 1 19.69 ? C3' ATP 404 A 1 HETATM 18 O O3' ATP . . . E 4 -9.78 -14.418 6.055 1 23.69 ? O3' ATP 404 A 1 HETATM 19 C C2' ATP . . . E 4 -9.436 -13.089 4.15 1 19.7 ? C2' ATP 404 A 1 HETATM 20 O O2' ATP . . . E 4 -10.638 -13.781 3.843 1 21.6 ? O2' ATP 404 A 1 HETATM 21 C C1' ATP . . . E 4 -9.902 -11.898 4.971 1 19.91 ? C1' ATP 404 A 1 HETATM 22 N N9 ATP . . . E 4 -10.141 -10.729 4.135 1 21.87 ? N9 ATP 404 A 1 HETATM 23 C C8 ATP . . . E 4 -9.317 -10.208 3.172 1 22.73 ? C8 ATP 404 A 1 HETATM 24 N N7 ATP . . . E 4 -9.8 -9.147 2.571 1 20.53 ? N7 ATP 404 A 1 HETATM 25 C C5 ATP . . . E 4 -11.03 -8.957 3.182 1 20.44 ? C5 ATP 404 A 1 HETATM 26 C C6 ATP . . . E 4 -12.043 -7.996 3 1 24.37 ? C6 ATP 404 A 1 HETATM 27 N N6 ATP . . . E 4 -11.975 -7.001 2.11 1 25.22 ? N6 ATP 404 A 1 HETATM 28 N N1 ATP . . . E 4 -13.145 -8.093 3.774 1 20.48 ? N1 ATP 404 A 1 HETATM 29 C C2 ATP . . . E 4 -13.221 -9.084 4.666 1 20.98 ? C2 ATP 404 A 1 HETATM 30 N N3 ATP . . . E 4 -12.333 -10.046 4.925 1 24.26 ? N3 ATP 404 A 1 HETATM 31 C C4 ATP . . . E 4 -11.254 -9.926 4.147 1 22.72 ? C4 ATP 404 A 1 HETATM 32 H "H5'1" ATP . . . E 4 -6.31 -11.761 6.026 1 24.81 ? "H5'1" ATP 404 A 1 HETATM 33 H "H5'2" ATP . . . E 4 -6.091 -13.326 5.92 1 24.81 ? "H5'2" ATP 404 A 1 HETATM 34 H H4' ATP . . . E 4 -8.133 -13.014 7.027 1 24.73 ? H4' ATP 404 A 1 HETATM 35 H H3' ATP . . . E 4 -8.097 -14.532 4.885 1 23.25 ? H3' ATP 404 A 1 HETATM 36 H HO3' ATP . . . E 4 -10.268 -14.901 5.553 1 28.55 ? HO3' ATP 404 A 1 HETATM 37 H H2' ATP . . . E 4 -8.857 -12.867 3.404 1 23.04 ? H2' ATP 404 A 1 HETATM 38 H HO2' ATP . . . E 4 -10.463 -14.309 3.2 1 26.04 ? HO2' ATP 404 A 1 HETATM 39 H H1' ATP . . . E 4 -10.686 -12.107 5.503 1 23.29 ? H1' ATP 404 A 1 HETATM 40 H H8 ATP . . . E 4 -8.489 -10.575 2.962 1 27.4 ? H8 ATP 404 A 1 HETATM 41 H HN61 ATP . . . E 4 -11.297 -6.938 1.584 1 30.38 ? HN61 ATP 404 A 1 HETATM 42 H HN62 ATP . . . E 4 -12.61 -6.423 2.06 1 30.38 ? HN62 ATP 404 A 1 HETATM 43 H H2 ATP . . . E 4 -13.998 -9.107 5.176 1 25.3 ? H2 ATP 404 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #