data_7MSV # _model_server_result.job_id G8hjlmYbtmhLOSbjxcv4EQ _model_server_result.datetime_utc '2025-02-27 21:08:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7msv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 7MSV # _exptl.entry_id 7MSV _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog TYPE_6_PAIR hydrog1 A N1 DG 3 X DG 3 1_555 A O6 DG 7 X DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 DG 3 X DG 3 1_555 A N7 DG 7 X DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 DG 3 X DG 3 1_555 A N2 DG 14 X DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 DG 3 X DG 3 1_555 A N1 DG 14 X DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 DG 4 X DG 4 1_555 A O6 DG 8 X DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 DG 4 X DG 4 1_555 A N7 DG 8 X DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 DG 4 X DG 4 1_555 A N2 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 DG 4 X DG 4 1_555 A N1 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 DG 5 X DG 5 1_555 A O6 DG 9 X DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 DG 5 X DG 5 1_555 A N7 DG 9 X DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N7 DG 5 X DG 5 1_555 A N2 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A O6 DG 5 X DG 5 1_555 A N1 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 8 X DG 8 1_555 A O6 DG 11 X DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 8 X DG 8 1_555 A N7 DG 11 X DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N1 DG 9 X DG 9 1_555 A O6 DG 12 X DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A N2 DG 9 X DG 9 1_555 A N7 DG 12 X DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 DG 11 X DG 11 1_555 A O6 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 DG 11 X DG 11 1_555 A N7 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A N1 DG 12 X DG 12 1_555 A O6 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N2 DG 12 X DG 12 1_555 A N7 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id DGP _chem_comp.mon_nstd_flag n _chem_comp.name "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP1 DGP doub 160 n n P OP2 DGP sing 161 n n P OP3 DGP sing 162 n n P O5' DGP sing 163 n n OP2 HOP2 DGP sing 164 n n OP3 HOP3 DGP sing 165 n n O5' C5' DGP sing 166 n n C5' C4' DGP sing 167 n n C5' H5' DGP sing 168 n n C5' "H5''" DGP sing 169 n n C4' O4' DGP sing 170 n n C4' C3' DGP sing 171 n n C4' H4' DGP sing 172 n n O4' C1' DGP sing 173 n n C3' O3' DGP sing 174 n n C3' C2' DGP sing 175 n n C3' H3' DGP sing 176 n n O3' HO3' DGP sing 177 n n C2' C1' DGP sing 178 n n C2' H2' DGP sing 179 n n C2' "H2''" DGP sing 180 n n C1' N9 DGP sing 181 n n C1' H1' DGP sing 182 n n N9 C8 DGP sing 183 n y N9 C4 DGP sing 184 n y C8 N7 DGP doub 185 n y C8 H8 DGP sing 186 n n N7 C5 DGP sing 187 n y C5 C6 DGP sing 188 n n C5 C4 DGP doub 189 n y C6 O6 DGP doub 190 n n C6 N1 DGP sing 191 n n N1 C2 DGP sing 192 n n N1 HN1 DGP sing 193 n n C2 N2 DGP sing 194 n n C2 N3 DGP doub 195 n n N2 HN21 DGP sing 196 n n N2 HN22 DGP sing 197 n n N3 C4 DGP sing 198 n n # _atom_sites.entry_id 7MSV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DGP X 1 101 20 DGP DGP . C 3 BER X 1 102 21 BER BER . D 3 BER X 1 103 22 BER BER . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P DGP . . . B 2 21.385 16.499 31.174 1 0 ? P DGP 101 X 1 HETATM 2 O OP1 DGP . . . B 2 20.414 17.588 30.926 1 0 ? OP1 DGP 101 X 1 HETATM 3 O OP2 DGP . . . B 2 20.911 15.222 31.759 1 0 ? OP2 DGP 101 X 1 HETATM 4 O OP3 DGP . . . B 2 22.089 16.161 29.782 1 0 ? OP3 DGP 101 X 1 HETATM 5 O O5' DGP . . . B 2 22.6 17.083 32.058 1 0 ? O5' DGP 101 X 1 HETATM 6 C C5' DGP . . . B 2 23.526 16.219 32.711 1 0 ? C5' DGP 101 X 1 HETATM 7 C C4' DGP . . . B 2 24.737 16.96 33.304 1 0 ? C4' DGP 101 X 1 HETATM 8 O O4' DGP . . . B 2 25.521 17.505 32.249 1 0 ? O4' DGP 101 X 1 HETATM 9 C C3' DGP . . . B 2 24.344 18.105 34.255 1 0 ? C3' DGP 101 X 1 HETATM 10 O O3' DGP . . . B 2 25.164 18.114 35.42 1 0 ? O3' DGP 101 X 1 HETATM 11 C C2' DGP . . . B 2 24.598 19.353 33.416 1 0 ? C2' DGP 101 X 1 HETATM 12 C C1' DGP . . . B 2 25.695 18.897 32.449 1 0 ? C1' DGP 101 X 1 HETATM 13 N N9 DGP . . . B 2 25.638 19.596 31.144 1 0 ? N9 DGP 101 X 1 HETATM 14 C C8 DGP . . . B 2 24.545 19.812 30.338 1 0 ? C8 DGP 101 X 1 HETATM 15 N N7 DGP . . . B 2 24.787 20.549 29.286 1 0 ? N7 DGP 101 X 1 HETATM 16 C C5 DGP . . . B 2 26.151 20.84 29.404 1 0 ? C5 DGP 101 X 1 HETATM 17 C C6 DGP . . . B 2 27.023 21.616 28.568 1 0 ? C6 DGP 101 X 1 HETATM 18 O O6 DGP . . . B 2 26.74 22.224 27.54 1 0 ? O6 DGP 101 X 1 HETATM 19 N N1 DGP . . . B 2 28.334 21.646 29 1 0 ? N1 DGP 101 X 1 HETATM 20 C C2 DGP . . . B 2 28.765 20.994 30.112 1 0 ? C2 DGP 101 X 1 HETATM 21 N N2 DGP . . . B 2 30.024 21.096 30.436 1 0 ? N2 DGP 101 X 1 HETATM 22 N N3 DGP . . . B 2 27.993 20.281 30.929 1 0 ? N3 DGP 101 X 1 HETATM 23 C C4 DGP . . . B 2 26.687 20.236 30.52 1 0 ? C4 DGP 101 X 1 HETATM 24 H HOP3 DGP . . . B 2 21.399 15.822 29.205 1 0 ? HOP3 DGP 101 X 1 HETATM 25 H H5' DGP . . . B 2 23.894 15.477 32.001 1 0 ? H5' DGP 101 X 1 HETATM 26 H "H5''" DGP . . . B 2 23.015 15.689 33.517 1 0 ? "H5''" DGP 101 X 1 HETATM 27 H H4' DGP . . . B 2 25.339 16.237 33.856 1 0 ? H4' DGP 101 X 1 HETATM 28 H H3' DGP . . . B 2 23.288 18.036 34.529 1 0 ? H3' DGP 101 X 1 HETATM 29 H HO3' DGP . . . B 2 24.737 18.661 36.109 1 0 ? HO3' DGP 101 X 1 HETATM 30 H H2' DGP . . . B 2 23.685 19.619 32.884 1 0 ? H2' DGP 101 X 1 HETATM 31 H "H2''" DGP . . . B 2 24.931 20.195 34.024 1 0 ? "H2''" DGP 101 X 1 HETATM 32 H H1' DGP . . . B 2 26.669 19.07 32.915 1 0 ? H1' DGP 101 X 1 HETATM 33 H H8 DGP . . . B 2 23.57 19.392 30.562 1 0 ? H8 DGP 101 X 1 HETATM 34 H HN1 DGP . . . B 2 28.985 22.177 28.439 1 0 ? HN1 DGP 101 X 1 HETATM 35 H HN21 DGP . . . B 2 30.676 21.647 29.889 1 0 ? HN21 DGP 101 X 1 HETATM 36 H HN22 DGP . . . B 2 30.328 20.621 31.268 1 0 ? HN22 DGP 101 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 3074 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #