data_7MSV
#
_model_server_result.job_id            DtSJExFoEBJtrSJRVaCcbg 
_model_server_result.datetime_utc      '2025-02-27 21:31:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7msv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":102}' 
#
_entry.id    7MSV 
#
_exptl.entry_id    7MSV 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              336.361 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BERBERINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog TYPE_6_PAIR hydrog1 A N1 DG 3 X DG 3 1_555 A O6 DG 7 X DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog2 A N2 DG 3 X DG 3 1_555 A N7 DG 7 X DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog3 A N7 DG 3 X DG 3 1_555 A N2 DG 14 X DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog4 A O6 DG 3 X DG 3 1_555 A N1 DG 14 X DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog5 A N1 DG 4 X DG 4 1_555 A O6 DG 8 X DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog6 A N2 DG 4 X DG 4 1_555 A N7 DG 8 X DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog7 A N7 DG 4 X DG 4 1_555 A N2 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog8 A O6 DG 4 X DG 4 1_555 A N1 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog9 A N1 DG 5 X DG 5 1_555 A O6 DG 9 X DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog10 A N2 DG 5 X DG 5 1_555 A N7 DG 9 X DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog11 A N7 DG 5 X DG 5 1_555 A N2 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog12 A O6 DG 5 X DG 5 1_555 A N1 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog13 A N1 DG 8 X DG 8 1_555 A O6 DG 11 X DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog14 A N2 DG 8 X DG 8 1_555 A N7 DG 11 X DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog15 A N1 DG 9 X DG 9 1_555 A O6 DG 12 X DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog16 A N2 DG 9 X DG 9 1_555 A N7 DG 12 X DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog17 A N1 DG 11 X DG 11 1_555 A O6 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog18 A N2 DG 11 X DG 11 1_555 A N7 DG 15 X DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog19 A N1 DG 12 X DG 12 1_555 A O6 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog20 A N2 DG 12 X DG 12 1_555 A N7 DG 16 X DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C20 H18 N O4 1' 
_chem_comp.formula_weight    336.361 
_chem_comp.id                BER 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BERBERINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BER sing 1 n y 
C1 N1 BER doub 2 n y 
C1 C3 BER sing 3 n y 
C2 C4 BER doub 4 n y 
C2 C5 BER sing 5 n y 
N1 C6 BER sing 6 n y 
N1 C7 BER sing 7 n n 
C3 C8 BER doub 8 n y 
C3 H31 BER sing 9 n n 
C4 C9 BER sing 10 n y 
C4 C10 BER sing 11 n n 
C5 C11 BER doub 12 n y 
C5 H51 BER sing 13 n n 
C6 C12 BER doub 14 n y 
C6 H61 BER sing 15 n n 
C7 C10 BER sing 16 n n 
C7 H71 BER sing 17 n n 
C7 H72 BER sing 18 n n 
C8 C12 BER sing 19 n y 
C8 C13 BER sing 20 n y 
C9 C14 BER doub 21 n y 
C9 H91 BER sing 22 n n 
C10 H101 BER sing 23 n n 
C10 H102 BER sing 24 n n 
C11 C14 BER sing 25 n y 
C11 O1 BER sing 26 n n 
C12 C15 BER sing 27 n y 
C13 C16 BER doub 28 n y 
C13 H131 BER sing 29 n n 
C14 O2 BER sing 30 n n 
O1 C17 BER sing 31 n n 
C15 C18 BER doub 32 n y 
C15 O3 BER sing 33 n n 
C16 C18 BER sing 34 n y 
C16 H161 BER sing 35 n n 
O2 C17 BER sing 36 n n 
C17 H171 BER sing 37 n n 
C17 H172 BER sing 38 n n 
C18 O4 BER sing 39 n n 
O3 C19 BER sing 40 n n 
O4 C20 BER sing 41 n n 
C19 H191 BER sing 42 n n 
C19 H192 BER sing 43 n n 
C19 H193 BER sing 44 n n 
C20 H201 BER sing 45 n n 
C20 H202 BER sing 46 n n 
C20 H203 BER sing 47 n n 
#
_atom_sites.entry_id                     7MSV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DGP X 1 101 20 DGP DGP . 
C 3 BER X 1 102 21 BER BER . 
D 3 BER X 1 103 22 BER BER . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BER . . . C 3 26.025 19.845 24.729 1 0 ? C1 BER 102 X 1 
HETATM 2 C C2 BER . . . C 3 25.548 20.485 23.543 1 0 ? C2 BER 102 X 1 
HETATM 3 N N1 BER . . . C 3 27.351 20.068 25.152 1 0 ? N1 BER 102 X 1 
HETATM 4 C C3 BER . . . C 3 25.205 19.01 25.527 1 0 ? C3 BER 102 X 1 
HETATM 5 C C4 BER . . . C 3 26.441 21.295 22.769 1 0 ? C4 BER 102 X 1 
HETATM 6 C C5 BER . . . C 3 24.201 20.34 23.093 1 0 ? C5 BER 102 X 1 
HETATM 7 C C6 BER . . . C 3 27.893 19.297 26.181 1 0 ? C6 BER 102 X 1 
HETATM 8 C C7 BER . . . C 3 28.113 21.219 24.663 1 0 ? C7 BER 102 X 1 
HETATM 9 C C8 BER . . . C 3 25.717 18.349 26.653 1 0 ? C8 BER 102 X 1 
HETATM 10 C C9 BER . . . C 3 26.013 21.947 21.593 1 0 ? C9 BER 102 X 1 
HETATM 11 C C10 BER . . . C 3 27.894 21.46 23.166 1 0 ? C10 BER 102 X 1 
HETATM 12 C C11 BER . . . C 3 23.813 20.998 21.921 1 0 ? C11 BER 102 X 1 
HETATM 13 C C12 BER . . . C 3 27.076 18.482 26.982 1 0 ? C12 BER 102 X 1 
HETATM 14 C C13 BER . . . C 3 24.882 17.539 27.44 1 0 ? C13 BER 102 X 1 
HETATM 15 C C14 BER . . . C 3 24.688 21.779 21.199 1 0 ? C14 BER 102 X 1 
HETATM 16 O O1 BER . . . C 3 22.594 20.983 21.32 1 0 ? O1 BER 102 X 1 
HETATM 17 C C15 BER . . . C 3 27.607 17.805 28.1 1 0 ? C15 BER 102 X 1 
HETATM 18 C C16 BER . . . C 3 25.403 16.874 28.566 1 0 ? C16 BER 102 X 1 
HETATM 19 O O2 BER . . . C 3 24.07 22.299 20.106 1 0 ? O2 BER 102 X 1 
HETATM 20 C C17 BER . . . C 3 22.686 21.841 20.144 1 0 ? C17 BER 102 X 1 
HETATM 21 C C18 BER . . . C 3 26.765 17 28.9 1 0 ? C18 BER 102 X 1 
HETATM 22 O O3 BER . . . C 3 28.943 17.976 28.41 1 0 ? O3 BER 102 X 1 
HETATM 23 O O4 BER . . . C 3 27.276 16.384 30.027 1 0 ? O4 BER 102 X 1 
HETATM 24 C C19 BER . . . C 3 29.852 16.86 28.358 1 0 ? C19 BER 102 X 1 
HETATM 25 C C20 BER . . . C 3 26.904 15.047 30.417 1 0 ? C20 BER 102 X 1 
HETATM 26 H H31 BER . . . C 3 24.164 18.847 25.284 1 0 ? H31 BER 102 X 1 
HETATM 27 H H51 BER . . . C 3 23.447 19.75 23.601 1 0 ? H51 BER 102 X 1 
HETATM 28 H H61 BER . . . C 3 28.954 19.422 26.397 1 0 ? H61 BER 102 X 1 
HETATM 29 H H71 BER . . . C 3 27.797 22.1 25.233 1 0 ? H71 BER 102 X 1 
HETATM 30 H H72 BER . . . C 3 29.183 21.078 24.854 1 0 ? H72 BER 102 X 1 
HETATM 31 H H91 BER . . . C 3 26.682 22.556 20.993 1 0 ? H91 BER 102 X 1 
HETATM 32 H H101 BER . . . C 3 28.511 20.763 22.586 1 0 ? H101 BER 102 X 1 
HETATM 33 H H102 BER . . . C 3 28.235 22.471 22.922 1 0 ? H102 BER 102 X 1 
HETATM 34 H H131 BER . . . C 3 23.826 17.436 27.193 1 0 ? H131 BER 102 X 1 
HETATM 35 H H161 BER . . . C 3 24.741 16.279 29.191 1 0 ? H161 BER 102 X 1 
HETATM 36 H H171 BER . . . C 3 22.446 21.273 19.236 1 0 ? H171 BER 102 X 1 
HETATM 37 H H172 BER . . . C 3 22.01 22.699 20.245 1 0 ? H172 BER 102 X 1 
HETATM 38 H H191 BER . . . C 3 29.797 16.361 27.382 1 0 ? H191 BER 102 X 1 
HETATM 39 H H192 BER . . . C 3 30.882 17.206 28.511 1 0 ? H192 BER 102 X 1 
HETATM 40 H H193 BER . . . C 3 29.622 16.125 29.14 1 0 ? H193 BER 102 X 1 
HETATM 41 H H201 BER . . . C 3 25.828 14.971 30.612 1 0 ? H201 BER 102 X 1 
HETATM 42 H H202 BER . . . C 3 27.176 14.325 29.636 1 0 ? H202 BER 102 X 1 
HETATM 43 H H203 BER . . . C 3 27.431 14.767 31.34 1 0 ? H203 BER 102 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           2447 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#