data_7MTA # _model_server_result.job_id u8Y3fHCv-su_HfKC9ePgtA _model_server_result.datetime_utc '2024-11-21 13:39:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7MTA # _exptl.entry_id 7MTA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 309.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SANGIVAMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 153 H CYS 153 1_555 B SG CYS 209 H CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 C SG CYS 24 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 C SG CYS 137 L CYS 137 1_555 C SG CYS 197 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 D SG CYS 110 R CYS 110 1_555 D SG CYS 187 R CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C12 H15 N5 O5' _chem_comp.formula_weight 309.278 _chem_comp.id SGV _chem_comp.mon_nstd_flag . _chem_comp.name SANGIVAMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-amino-7-beta-D-ribofuranosyl-7H-pyrrolo[2,3-d]pyrimidine-5-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SGV doub 337 n y N1 C6 SGV sing 338 n y C2 N3 SGV sing 339 n y N3 C4 SGV doub 340 n y C4 C5 SGV sing 341 n y C4 N9 SGV sing 342 n y C5 C6 SGV doub 343 n y C5 C7 SGV sing 344 n y C6 N6 SGV sing 345 n n C7 C8 SGV doub 346 n y C7 C10 SGV sing 347 n n C8 N9 SGV sing 348 n y N9 C1' SGV sing 349 n n C1' C2' SGV sing 350 n n C1' O4' SGV sing 351 n n C10 N11 SGV sing 352 n n C10 O12 SGV doub 353 n n C2' O2' SGV sing 354 n n C2' C3' SGV sing 355 n n C3' O3' SGV sing 356 n n C3' C4' SGV sing 357 n n C4' O4' SGV sing 358 n n C4' C5' SGV sing 359 n n C5' O5' SGV sing 360 n n C2 H2 SGV sing 361 n n N6 HN6 SGV sing 362 n n N6 HN6A SGV sing 363 n n C8 H8 SGV sing 364 n n C1' H1' SGV sing 365 n n N11 HN11 SGV sing 366 n n N11 HN1A SGV sing 367 n n C2' H2' SGV sing 368 n n O2' HO2' SGV sing 369 n n C3' H3' SGV sing 370 n n O3' HO3' SGV sing 371 n n C4' H4' SGV sing 372 n n C5' H5' SGV sing 373 n n C5' "H5'A" SGV sing 374 n n O5' HO5' SGV sing 375 n n # _atom_sites.entry_id 7MTA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SGV G 1 601 1 SGV SGV . F 6 RET R 1 401 1 RET RET . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SGV . . . E 5 217.121 201.998 215.529 1 0 ? N1 SGV 601 G 1 HETATM 2 C C2 SGV . . . E 5 217.981 202.963 215.944 1 0 ? C2 SGV 601 G 1 HETATM 3 N N3 SGV . . . E 5 217.768 204.302 216.011 1 0 ? N3 SGV 601 G 1 HETATM 4 C C4 SGV . . . E 5 216.536 204.651 215.574 1 0 ? C4 SGV 601 G 1 HETATM 5 C C5 SGV . . . E 5 215.555 203.775 215.096 1 0 ? C5 SGV 601 G 1 HETATM 6 C C6 SGV . . . E 5 215.88 202.389 215.108 1 0 ? C6 SGV 601 G 1 HETATM 7 N N6 SGV . . . E 5 214.97 201.399 214.726 1 0 ? N6 SGV 601 G 1 HETATM 8 C C7 SGV . . . E 5 214.43 204.592 214.74 1 0 ? C7 SGV 601 G 1 HETATM 9 C C8 SGV . . . E 5 214.778 205.901 215.018 1 0 ? C8 SGV 601 G 1 HETATM 10 N N9 SGV . . . E 5 216.025 205.92 215.578 1 0 ? N9 SGV 601 G 1 HETATM 11 C C1' SGV . . . E 5 216.689 207.078 216.176 1 0 ? C1' SGV 601 G 1 HETATM 12 C C10 SGV . . . E 5 213.172 204.177 214.155 1 0 ? C10 SGV 601 G 1 HETATM 13 N N11 SGV . . . E 5 212.097 204.974 214.467 1 0 ? N11 SGV 601 G 1 HETATM 14 O O12 SGV . . . E 5 213.082 203.185 213.449 1 0 ? O12 SGV 601 G 1 HETATM 15 C C2' SGV . . . E 5 217.359 207.963 215.142 1 0 ? C2' SGV 601 G 1 HETATM 16 O O2' SGV . . . E 5 218.592 208.415 215.702 1 0 ? O2' SGV 601 G 1 HETATM 17 C C3' SGV . . . E 5 216.371 209.095 215.009 1 0 ? C3' SGV 601 G 1 HETATM 18 O O3' SGV . . . E 5 216.925 210.319 214.535 1 0 ? O3' SGV 601 G 1 HETATM 19 C C4' SGV . . . E 5 215.871 209.223 216.422 1 0 ? C4' SGV 601 G 1 HETATM 20 O O4' SGV . . . E 5 215.712 207.875 216.867 1 0 ? O4' SGV 601 G 1 HETATM 21 C C5' SGV . . . E 5 214.572 210.004 216.551 1 0 ? C5' SGV 601 G 1 HETATM 22 O O5' SGV . . . E 5 213.589 209.516 215.647 1 0 ? O5' SGV 601 G 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 1380 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #