data_7MWW # _model_server_result.job_id Kpaane_Ot5XaQTDDmXYHng _model_server_result.datetime_utc '2024-10-19 15:40:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 7MWW # _exptl.entry_id 7MWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MWW _cell.length_a 95.84 _cell.length_b 155.561 _cell.length_c 129.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG E 653 NAG 4 n D NAG 2 A 2 NAG E 655 NAG 4 n D BMA 3 A 3 BMA E 657 BMA 5 n E NAG 1 B 1 NAG E 654 NAG 5 n E NAG 2 B 2 NAG E 656 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 E CYS 429 1_555 A SG CYS 122 E CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 69 E CYS 452 1_555 A SG CYS 241 E CYS 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf3 A SG CYS 113 E CYS 496 1_555 A SG CYS 183 E CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 127 E CYS 510 1_555 A SG CYS 171 E CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 A SG CYS 188 E CYS 571 1_555 A SG CYS 218 E CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 228 E CYS 611 1_555 A SG CYS 265 E CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf7 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 B SG CYS 145 H CYS 145 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf9 C SG CYS 43 L CYS 23 1_555 C SG CYS 114 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf10 C SG CYS 160 L CYS 140 1_555 C SG CYS 220 L CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 40 E ASN 423 1_555 G C1 NAG . E NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale2 A ND2 ASN 175 E ASN 558 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 244 E ASN 627 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 266 E ASN 649 1_555 F C1 NAG . E NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 D O4 NAG . A NAG 2 1_555 D C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7MWW _atom_sites.fract_transf_matrix[1][1] 0.010434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG E 1 701 652 NAG NAG . G 6 NAG E 1 702 658 NAG NAG . H 7 HOH E 1 801 103 HOH HOH . H 7 HOH E 2 802 47 HOH HOH . H 7 HOH E 3 803 56 HOH HOH . H 7 HOH E 4 804 104 HOH HOH . I 7 HOH H 1 301 58 HOH HOH . I 7 HOH H 2 302 76 HOH HOH . I 7 HOH H 3 303 3 HOH HOH . I 7 HOH H 4 304 40 HOH HOH . I 7 HOH H 5 305 5 HOH HOH . I 7 HOH H 6 306 74 HOH HOH . I 7 HOH H 7 307 69 HOH HOH . I 7 HOH H 8 308 27 HOH HOH . I 7 HOH H 9 309 52 HOH HOH . I 7 HOH H 10 310 18 HOH HOH . I 7 HOH H 11 311 63 HOH HOH . I 7 HOH H 12 312 29 HOH HOH . I 7 HOH H 13 313 6 HOH HOH . I 7 HOH H 14 314 15 HOH HOH . I 7 HOH H 15 315 53 HOH HOH . I 7 HOH H 16 316 43 HOH HOH . I 7 HOH H 17 317 72 HOH HOH . I 7 HOH H 18 318 28 HOH HOH . I 7 HOH H 19 319 48 HOH HOH . I 7 HOH H 20 320 61 HOH HOH . I 7 HOH H 21 321 17 HOH HOH . I 7 HOH H 22 322 32 HOH HOH . I 7 HOH H 23 323 84 HOH HOH . I 7 HOH H 24 324 105 HOH HOH . I 7 HOH H 25 325 51 HOH HOH . I 7 HOH H 26 326 20 HOH HOH . I 7 HOH H 27 327 70 HOH HOH . I 7 HOH H 28 328 12 HOH HOH . I 7 HOH H 29 329 59 HOH HOH . I 7 HOH H 30 330 19 HOH HOH . I 7 HOH H 31 331 99 HOH HOH . I 7 HOH H 32 332 90 HOH HOH . I 7 HOH H 33 333 9 HOH HOH . I 7 HOH H 34 334 34 HOH HOH . I 7 HOH H 35 335 71 HOH HOH . I 7 HOH H 36 336 77 HOH HOH . I 7 HOH H 37 337 83 HOH HOH . I 7 HOH H 38 338 85 HOH HOH . I 7 HOH H 39 339 25 HOH HOH . I 7 HOH H 40 340 108 HOH HOH . I 7 HOH H 41 341 107 HOH HOH . I 7 HOH H 42 342 106 HOH HOH . I 7 HOH H 43 343 37 HOH HOH . I 7 HOH H 44 344 112 HOH HOH . I 7 HOH H 45 345 45 HOH HOH . I 7 HOH H 46 346 101 HOH HOH . I 7 HOH H 47 347 31 HOH HOH . J 7 HOH L 1 301 62 HOH HOH . J 7 HOH L 2 302 26 HOH HOH . J 7 HOH L 3 303 23 HOH HOH . J 7 HOH L 4 304 78 HOH HOH . J 7 HOH L 5 305 55 HOH HOH . J 7 HOH L 6 306 30 HOH HOH . J 7 HOH L 7 307 8 HOH HOH . J 7 HOH L 8 308 82 HOH HOH . J 7 HOH L 9 309 95 HOH HOH . J 7 HOH L 10 310 36 HOH HOH . J 7 HOH L 11 311 33 HOH HOH . J 7 HOH L 12 312 16 HOH HOH . J 7 HOH L 13 313 94 HOH HOH . J 7 HOH L 14 314 57 HOH HOH . J 7 HOH L 15 315 67 HOH HOH . J 7 HOH L 16 316 73 HOH HOH . J 7 HOH L 17 317 14 HOH HOH . J 7 HOH L 18 318 38 HOH HOH . J 7 HOH L 19 319 13 HOH HOH . J 7 HOH L 20 320 2 HOH HOH . J 7 HOH L 21 321 100 HOH HOH . J 7 HOH L 22 322 39 HOH HOH . J 7 HOH L 23 323 54 HOH HOH . J 7 HOH L 24 324 93 HOH HOH . J 7 HOH L 25 325 46 HOH HOH . J 7 HOH L 26 326 91 HOH HOH . J 7 HOH L 27 327 35 HOH HOH . J 7 HOH L 28 328 7 HOH HOH . J 7 HOH L 29 329 10 HOH HOH . J 7 HOH L 30 330 64 HOH HOH . J 7 HOH L 31 331 102 HOH HOH . J 7 HOH L 32 332 41 HOH HOH . J 7 HOH L 33 333 11 HOH HOH . J 7 HOH L 34 334 79 HOH HOH . J 7 HOH L 35 335 81 HOH HOH . J 7 HOH L 36 336 42 HOH HOH . J 7 HOH L 37 337 88 HOH HOH . J 7 HOH L 38 338 98 HOH HOH . J 7 HOH L 39 339 60 HOH HOH . J 7 HOH L 40 340 80 HOH HOH . J 7 HOH L 41 341 49 HOH HOH . J 7 HOH L 42 342 66 HOH HOH . J 7 HOH L 43 343 109 HOH HOH . J 7 HOH L 44 344 68 HOH HOH . J 7 HOH L 45 345 96 HOH HOH . J 7 HOH L 46 346 92 HOH HOH . J 7 HOH L 47 347 87 HOH HOH . J 7 HOH L 48 348 111 HOH HOH . J 7 HOH L 49 349 110 HOH HOH . J 7 HOH L 50 350 89 HOH HOH . J 7 HOH L 51 351 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 6 18.932 1.349 -43.126 1 121.7 ? C1 NAG 701 E 1 HETATM 2 C C2 NAG . . . F 6 19.359 -0.097 -43.375 1 124.18 ? C2 NAG 701 E 1 HETATM 3 C C3 NAG . . . F 6 19.093 -0.484 -44.827 1 122.43 ? C3 NAG 701 E 1 HETATM 4 C C4 NAG . . . F 6 17.638 -0.218 -45.189 1 119.84 ? C4 NAG 701 E 1 HETATM 5 C C5 NAG . . . F 6 17.268 1.229 -44.866 1 114.48 ? C5 NAG 701 E 1 HETATM 6 C C6 NAG . . . F 6 15.801 1.524 -45.078 1 101.28 ? C6 NAG 701 E 1 HETATM 7 C C7 NAG . . . F 6 21.162 -0.864 -41.895 1 119.28 ? C7 NAG 701 E 1 HETATM 8 C C8 NAG . . . F 6 22.644 -0.989 -41.709 1 118.33 ? C8 NAG 701 E 1 HETATM 9 N N2 NAG . . . F 6 20.76 -0.296 -43.037 1 122.6 ? N2 NAG 701 E 1 HETATM 10 O O3 NAG . . . F 6 19.392 -1.863 -45.015 1 122.61 ? O3 NAG 701 E 1 HETATM 11 O O4 NAG . . . F 6 17.424 -0.47 -46.574 1 118.82 ? O4 NAG 701 E 1 HETATM 12 O O5 NAG . . . F 6 17.55 1.513 -43.487 1 121.25 ? O5 NAG 701 E 1 HETATM 13 O O6 NAG . . . F 6 14.986 0.791 -44.174 1 91.68 ? O6 NAG 701 E 1 HETATM 14 O O7 NAG . . . F 6 20.366 -1.259 -41.05 1 117.69 ? O7 NAG 701 E 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #