data_7MX0 # _model_server_result.job_id -9VUyen0-r8qo-byzezpnw _model_server_result.datetime_utc '2024-11-15 05:54:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7MX0 # _exptl.entry_id 7MX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.363 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MX0 _cell.length_a 89.631 _cell.length_b 89.631 _cell.length_c 133.93 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.631 89.631 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 89.631 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 89.631 0 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 89.631 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 89.631 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 89.631 89.631 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 WTD . A WTD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 WTD . A WTD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O10 WTD . A WTD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O13 WTD . A WTD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? # _chem_comp.formula 'C20 H17 F2 N3 O5' _chem_comp.formula_weight 417.363 _chem_comp.id WTD _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 WTD doub 489 n y C28 C29 WTD sing 490 n y C27 C05 WTD sing 491 n y O30 C29 WTD sing 492 n n C29 C03 WTD doub 493 n y C05 C06 WTD sing 494 n n C05 C04 WTD doub 495 n y C06 C07 WTD sing 496 n n C03 C04 WTD sing 497 n y C03 O02 WTD sing 498 n n O02 C01 WTD sing 499 n n C07 N08 WTD sing 500 n n C22 C23 WTD doub 501 n y C22 C20 WTD sing 502 n y C23 C24 WTD sing 503 n y N08 C09 WTD sing 504 n n F21 C20 WTD sing 505 n n C20 C19 WTD doub 506 n y C24 C25 WTD doub 507 n y C19 C25 WTD sing 508 n y C19 C17 WTD sing 509 n n C25 F26 WTD sing 510 n n N18 C17 WTD sing 511 n n N18 C11 WTD sing 512 n n C09 C11 WTD sing 513 n n C09 O10 WTD doub 514 n n C17 N16 WTD doub 515 n n C11 C12 WTD doub 516 n n N16 C14 WTD sing 517 n n C12 C14 WTD sing 518 n n C12 O13 WTD sing 519 n n C14 O15 WTD doub 520 n n C01 H1 WTD sing 521 n n C01 H2 WTD sing 522 n n C01 H3 WTD sing 523 n n C04 H4 WTD sing 524 n n C06 H5 WTD sing 525 n n C06 H6 WTD sing 526 n n C07 H7 WTD sing 527 n n C07 H8 WTD sing 528 n n C22 H9 WTD sing 529 n n C23 H10 WTD sing 530 n n C24 H11 WTD sing 531 n n C27 H12 WTD sing 532 n n C28 H13 WTD sing 533 n n N08 H14 WTD sing 534 n n N18 H15 WTD sing 535 n n O13 H16 WTD sing 536 n n O30 H17 WTD sing 537 n n # _atom_sites.entry_id 7MX0 _atom_sites.fract_transf_matrix[1][1] 0.011157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 WTD A 1 203 301 WTD 558 . E 4 QQ4 A 1 204 401 QQ4 PVP . F 5 SO4 A 1 205 2 SO4 SO4 . G 5 SO4 A 1 206 3 SO4 SO4 . H 6 HOH A 1 301 3 HOH HOH . H 6 HOH A 2 302 1 HOH HOH . H 6 HOH A 3 303 6 HOH HOH . H 6 HOH A 4 304 5 HOH HOH . H 6 HOH A 5 305 4 HOH HOH . H 6 HOH A 6 306 2 HOH HOH . H 6 HOH A 7 307 9 HOH HOH . H 6 HOH A 8 308 11 HOH HOH . H 6 HOH A 9 309 10 HOH HOH . H 6 HOH A 10 310 7 HOH HOH . H 6 HOH A 11 311 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WTD . . . D 3 41.427 9.836 12.908 1 105.55 ? C01 WTD 203 A 1 HETATM 2 C C03 WTD . . . D 3 40.339 11.796 12.169 1 116.88 ? C03 WTD 203 A 1 HETATM 3 C C04 WTD . . . D 3 40.851 13.025 12.555 1 116.75 ? C04 WTD 203 A 1 HETATM 4 C C05 WTD . . . D 3 40.835 14.097 11.674 1 105.5 ? C05 WTD 203 A 1 HETATM 5 C C06 WTD . . . D 3 41.407 15.447 12.106 1 96.56 ? C06 WTD 203 A 1 HETATM 6 C C07 WTD . . . D 3 41.139 15.749 13.578 1 93.13 ? C07 WTD 203 A 1 HETATM 7 C C09 WTD . . . D 3 42.027 14.823 15.755 1 71.64 ? C09 WTD 203 A 1 HETATM 8 C C11 WTD . . . D 3 40.624 14.829 16.357 1 83.79 ? C11 WTD 203 A 1 HETATM 9 C C12 WTD . . . D 3 40.342 15.636 17.578 1 68.81 ? C12 WTD 203 A 1 HETATM 10 C C14 WTD . . . D 3 38.972 15.645 18.167 1 65.55 ? C14 WTD 203 A 1 HETATM 11 C C17 WTD . . . D 3 38.203 14.068 16.338 1 85.9 ? C17 WTD 203 A 1 HETATM 12 C C19 WTD . . . D 3 37.105 13.249 15.678 1 98.93 ? C19 WTD 203 A 1 HETATM 13 C C20 WTD . . . D 3 36.223 13.865 14.807 1 106.31 ? C20 WTD 203 A 1 HETATM 14 C C22 WTD . . . D 3 35.225 13.122 14.201 1 101.31 ? C22 WTD 203 A 1 HETATM 15 C C23 WTD . . . D 3 35.119 11.767 14.47 1 106.39 ? C23 WTD 203 A 1 HETATM 16 C C24 WTD . . . D 3 36.005 11.152 15.341 1 105.03 ? C24 WTD 203 A 1 HETATM 17 C C25 WTD . . . D 3 37.003 11.896 15.946 1 94.56 ? C25 WTD 203 A 1 HETATM 18 C C27 WTD . . . D 3 40.307 13.939 10.402 1 93.13 ? C27 WTD 203 A 1 HETATM 19 C C28 WTD . . . D 3 39.793 12.711 10.015 1 101.96 ? C28 WTD 203 A 1 HETATM 20 C C29 WTD . . . D 3 39.807 11.641 10.897 1 119.81 ? C29 WTD 203 A 1 HETATM 21 F F21 WTD . . . D 3 36.338 15.202 14.55 1 104.92 ? F21 WTD 203 A 1 HETATM 22 F F26 WTD . . . D 3 37.882 11.301 16.806 1 84.02 ? F26 WTD 203 A 1 HETATM 23 N N08 WTD . . . D 3 42.243 15.28 14.395 1 103.96 ? N08 WTD 203 A 1 HETATM 24 N N16 WTD . . . D 3 37.912 14.87 17.554 1 72.48 ? N16 WTD 203 A 1 HETATM 25 N N18 WTD . . . D 3 39.563 14.052 15.748 1 87.72 ? N18 WTD 203 A 1 HETATM 26 O O02 WTD . . . D 3 40.352 10.719 13.066 1 112.28 ? O02 WTD 203 A 1 HETATM 27 O O10 WTD . . . D 3 42.943 14.446 16.404 1 72.99 ? O10 WTD 203 A 1 HETATM 28 O O13 WTD . . . D 3 41.365 16.385 18.169 1 73.16 ? O13 WTD 203 A 1 HETATM 29 O O15 WTD . . . D 3 38.751 16.288 19.135 1 54.33 ? O15 WTD 203 A 1 HETATM 30 O O30 WTD . . . D 3 39.287 10.402 10.503 1 127.35 ? O30 WTD 203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #