data_7MX4
#
_model_server_result.job_id            8o5pljTIdJWGIbQBE5N3Bg 
_model_server_result.datetime_utc      '2024-10-20 00:24:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    7MX4 
#
_exptl.entry_id    7MX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          8 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MX4 
_cell.length_a            55.419 
_cell.length_b            71.737 
_cell.length_c            100.761 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 H N N 
? 8 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 102 A CYS 102 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf3 B SG CYS 28 B CYS 26 1_555 B SG CYS 83 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 274 n n 
C1 O1B MLA doub 275 n n 
C1 C2 MLA sing 276 n n 
O1A H1A MLA sing 277 n n 
C2 C3 MLA sing 278 n n 
C2 HC21 MLA sing 279 n n 
C2 HC22 MLA sing 280 n n 
C3 O3A MLA doub 281 n n 
C3 O3B MLA sing 282 n n 
O3B H3B MLA sing 283 n n 
#
_atom_sites.entry_id                     7MX4 
_atom_sites.fract_transf_matrix[1][1]    0.018044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01394 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 301 285 NAG NAG . 
D 4 ZPD A 1 302 1 ZPD D25 . 
E 5 D12 A 1 303 2 D12 SPL . 
F 6 ZP7 A 1 304 3 ZP7 2PG . 
G 7 NHE A 1 305 1 NHE CES . 
H 8 MLA A 1 306 3 MLA MAL . 
I 8 MLA B 1 201 2 MLA MAL . 
J 9 HOH A 1 401 165 HOH HOH . 
J 9 HOH A 2 402 56 HOH HOH . 
J 9 HOH A 3 403 115 HOH HOH . 
J 9 HOH A 4 404 2 HOH HOH . 
J 9 HOH A 5 405 86 HOH HOH . 
J 9 HOH A 6 406 208 HOH HOH . 
J 9 HOH A 7 407 58 HOH HOH . 
J 9 HOH A 8 408 157 HOH HOH . 
J 9 HOH A 9 409 87 HOH HOH . 
J 9 HOH A 10 410 29 HOH HOH . 
J 9 HOH A 11 411 140 HOH HOH . 
J 9 HOH A 12 412 156 HOH HOH . 
J 9 HOH A 13 413 69 HOH HOH . 
J 9 HOH A 14 414 94 HOH HOH . 
J 9 HOH A 15 415 177 HOH HOH . 
J 9 HOH A 16 416 42 HOH HOH . 
J 9 HOH A 17 417 44 HOH HOH . 
J 9 HOH A 18 418 150 HOH HOH . 
J 9 HOH A 19 419 60 HOH HOH . 
J 9 HOH A 20 420 53 HOH HOH . 
J 9 HOH A 21 421 209 HOH HOH . 
J 9 HOH A 22 422 34 HOH HOH . 
J 9 HOH A 23 423 105 HOH HOH . 
J 9 HOH A 24 424 12 HOH HOH . 
J 9 HOH A 25 425 17 HOH HOH . 
J 9 HOH A 26 426 45 HOH HOH . 
J 9 HOH A 27 427 64 HOH HOH . 
J 9 HOH A 28 428 119 HOH HOH . 
J 9 HOH A 29 429 170 HOH HOH . 
J 9 HOH A 30 430 141 HOH HOH . 
J 9 HOH A 31 431 174 HOH HOH . 
J 9 HOH A 32 432 47 HOH HOH . 
J 9 HOH A 33 433 39 HOH HOH . 
J 9 HOH A 34 434 76 HOH HOH . 
J 9 HOH A 35 435 14 HOH HOH . 
J 9 HOH A 36 436 125 HOH HOH . 
J 9 HOH A 37 437 70 HOH HOH . 
J 9 HOH A 38 438 71 HOH HOH . 
J 9 HOH A 39 439 6 HOH HOH . 
J 9 HOH A 40 440 21 HOH HOH . 
J 9 HOH A 41 441 186 HOH HOH . 
J 9 HOH A 42 442 75 HOH HOH . 
J 9 HOH A 43 443 59 HOH HOH . 
J 9 HOH A 44 444 137 HOH HOH . 
J 9 HOH A 45 445 106 HOH HOH . 
J 9 HOH A 46 446 199 HOH HOH . 
J 9 HOH A 47 447 80 HOH HOH . 
J 9 HOH A 48 448 92 HOH HOH . 
J 9 HOH A 49 449 181 HOH HOH . 
J 9 HOH A 50 450 5 HOH HOH . 
J 9 HOH A 51 451 19 HOH HOH . 
J 9 HOH A 52 452 78 HOH HOH . 
J 9 HOH A 53 453 31 HOH HOH . 
J 9 HOH A 54 454 145 HOH HOH . 
J 9 HOH A 55 455 7 HOH HOH . 
J 9 HOH A 56 456 30 HOH HOH . 
J 9 HOH A 57 457 9 HOH HOH . 
J 9 HOH A 58 458 3 HOH HOH . 
J 9 HOH A 59 459 120 HOH HOH . 
J 9 HOH A 60 460 28 HOH HOH . 
J 9 HOH A 61 461 81 HOH HOH . 
J 9 HOH A 62 462 55 HOH HOH . 
J 9 HOH A 63 463 148 HOH HOH . 
J 9 HOH A 64 464 22 HOH HOH . 
J 9 HOH A 65 465 52 HOH HOH . 
J 9 HOH A 66 466 96 HOH HOH . 
J 9 HOH A 67 467 51 HOH HOH . 
J 9 HOH A 68 468 127 HOH HOH . 
J 9 HOH A 69 469 101 HOH HOH . 
J 9 HOH A 70 470 205 HOH HOH . 
J 9 HOH A 71 471 95 HOH HOH . 
J 9 HOH A 72 472 117 HOH HOH . 
J 9 HOH A 73 473 13 HOH HOH . 
J 9 HOH A 74 474 146 HOH HOH . 
J 9 HOH A 75 475 104 HOH HOH . 
J 9 HOH A 76 476 138 HOH HOH . 
J 9 HOH A 77 477 15 HOH HOH . 
J 9 HOH A 78 478 197 HOH HOH . 
J 9 HOH A 79 479 66 HOH HOH . 
J 9 HOH A 80 480 88 HOH HOH . 
J 9 HOH A 81 481 130 HOH HOH . 
J 9 HOH A 82 482 91 HOH HOH . 
J 9 HOH A 83 483 207 HOH HOH . 
J 9 HOH A 84 484 147 HOH HOH . 
J 9 HOH A 85 485 142 HOH HOH . 
J 9 HOH A 86 486 27 HOH HOH . 
J 9 HOH A 87 487 187 HOH HOH . 
J 9 HOH A 88 488 54 HOH HOH . 
J 9 HOH A 89 489 151 HOH HOH . 
J 9 HOH A 90 490 107 HOH HOH . 
J 9 HOH A 91 491 189 HOH HOH . 
J 9 HOH A 92 492 173 HOH HOH . 
J 9 HOH A 93 493 112 HOH HOH . 
J 9 HOH A 94 494 116 HOH HOH . 
J 9 HOH A 95 495 23 HOH HOH . 
J 9 HOH A 96 496 185 HOH HOH . 
J 9 HOH A 97 497 132 HOH HOH . 
J 9 HOH A 98 498 24 HOH HOH . 
J 9 HOH A 99 499 74 HOH HOH . 
J 9 HOH A 100 500 223 HOH HOH . 
J 9 HOH A 101 501 82 HOH HOH . 
J 9 HOH A 102 502 32 HOH HOH . 
J 9 HOH A 103 503 218 HOH HOH . 
J 9 HOH A 104 504 36 HOH HOH . 
J 9 HOH A 105 505 61 HOH HOH . 
J 9 HOH A 106 506 98 HOH HOH . 
J 9 HOH A 107 507 139 HOH HOH . 
J 9 HOH A 108 508 113 HOH HOH . 
J 9 HOH A 109 509 85 HOH HOH . 
J 9 HOH A 110 510 171 HOH HOH . 
J 9 HOH A 111 511 89 HOH HOH . 
J 9 HOH A 112 512 25 HOH HOH . 
J 9 HOH A 113 513 183 HOH HOH . 
J 9 HOH A 114 514 198 HOH HOH . 
J 9 HOH A 115 515 20 HOH HOH . 
J 9 HOH A 116 516 62 HOH HOH . 
J 9 HOH A 117 517 200 HOH HOH . 
J 9 HOH A 118 518 184 HOH HOH . 
J 9 HOH A 119 519 10 HOH HOH . 
J 9 HOH A 120 520 136 HOH HOH . 
J 9 HOH A 121 521 109 HOH HOH . 
J 9 HOH A 122 522 33 HOH HOH . 
J 9 HOH A 123 523 90 HOH HOH . 
J 9 HOH A 124 524 99 HOH HOH . 
J 9 HOH A 125 525 192 HOH HOH . 
J 9 HOH A 126 526 160 HOH HOH . 
J 9 HOH A 127 527 144 HOH HOH . 
J 9 HOH A 128 528 172 HOH HOH . 
J 9 HOH A 129 529 217 HOH HOH . 
J 9 HOH A 130 530 73 HOH HOH . 
J 9 HOH A 131 531 212 HOH HOH . 
J 9 HOH A 132 532 79 HOH HOH . 
J 9 HOH A 133 533 167 HOH HOH . 
J 9 HOH A 134 534 93 HOH HOH . 
J 9 HOH A 135 535 72 HOH HOH . 
J 9 HOH A 136 536 188 HOH HOH . 
J 9 HOH A 137 537 134 HOH HOH . 
J 9 HOH A 138 538 179 HOH HOH . 
J 9 HOH A 139 539 143 HOH HOH . 
J 9 HOH A 140 540 211 HOH HOH . 
J 9 HOH A 141 541 110 HOH HOH . 
J 9 HOH A 142 542 118 HOH HOH . 
J 9 HOH A 143 543 152 HOH HOH . 
J 9 HOH A 144 544 163 HOH HOH . 
J 9 HOH A 145 545 124 HOH HOH . 
J 9 HOH A 146 546 204 HOH HOH . 
J 9 HOH A 147 547 153 HOH HOH . 
J 9 HOH A 148 548 175 HOH HOH . 
J 9 HOH A 149 549 100 HOH HOH . 
J 9 HOH A 150 550 67 HOH HOH . 
J 9 HOH A 151 551 158 HOH HOH . 
J 9 HOH A 152 552 83 HOH HOH . 
J 9 HOH A 153 553 194 HOH HOH . 
J 9 HOH A 154 554 129 HOH HOH . 
J 9 HOH A 155 555 182 HOH HOH . 
J 9 HOH A 156 556 97 HOH HOH . 
J 9 HOH A 157 557 191 HOH HOH . 
J 9 HOH A 158 558 224 HOH HOH . 
J 9 HOH A 159 559 201 HOH HOH . 
J 9 HOH A 160 560 195 HOH HOH . 
J 9 HOH A 161 561 168 HOH HOH . 
J 9 HOH A 162 562 214 HOH HOH . 
J 9 HOH A 163 563 221 HOH HOH . 
J 9 HOH A 164 564 176 HOH HOH . 
J 9 HOH A 165 565 135 HOH HOH . 
J 9 HOH A 166 566 222 HOH HOH . 
K 9 HOH B 1 301 206 HOH HOH . 
K 9 HOH B 2 302 161 HOH HOH . 
K 9 HOH B 3 303 43 HOH HOH . 
K 9 HOH B 4 304 11 HOH HOH . 
K 9 HOH B 5 305 49 HOH HOH . 
K 9 HOH B 6 306 63 HOH HOH . 
K 9 HOH B 7 307 4 HOH HOH . 
K 9 HOH B 8 308 190 HOH HOH . 
K 9 HOH B 9 309 114 HOH HOH . 
K 9 HOH B 10 310 154 HOH HOH . 
K 9 HOH B 11 311 68 HOH HOH . 
K 9 HOH B 12 312 111 HOH HOH . 
K 9 HOH B 13 313 35 HOH HOH . 
K 9 HOH B 14 314 48 HOH HOH . 
K 9 HOH B 15 315 65 HOH HOH . 
K 9 HOH B 16 316 46 HOH HOH . 
K 9 HOH B 17 317 57 HOH HOH . 
K 9 HOH B 18 318 37 HOH HOH . 
K 9 HOH B 19 319 8 HOH HOH . 
K 9 HOH B 20 320 225 HOH HOH . 
K 9 HOH B 21 321 149 HOH HOH . 
K 9 HOH B 22 322 133 HOH HOH . 
K 9 HOH B 23 323 103 HOH HOH . 
K 9 HOH B 24 324 16 HOH HOH . 
K 9 HOH B 25 325 1 HOH HOH . 
K 9 HOH B 26 326 41 HOH HOH . 
K 9 HOH B 27 327 210 HOH HOH . 
K 9 HOH B 28 328 121 HOH HOH . 
K 9 HOH B 29 329 215 HOH HOH . 
K 9 HOH B 30 330 123 HOH HOH . 
K 9 HOH B 31 331 155 HOH HOH . 
K 9 HOH B 32 332 84 HOH HOH . 
K 9 HOH B 33 333 203 HOH HOH . 
K 9 HOH B 34 334 18 HOH HOH . 
K 9 HOH B 35 335 40 HOH HOH . 
K 9 HOH B 36 336 196 HOH HOH . 
K 9 HOH B 37 337 38 HOH HOH . 
K 9 HOH B 38 338 26 HOH HOH . 
K 9 HOH B 39 339 108 HOH HOH . 
K 9 HOH B 40 340 50 HOH HOH . 
K 9 HOH B 41 341 169 HOH HOH . 
K 9 HOH B 42 342 220 HOH HOH . 
K 9 HOH B 43 343 77 HOH HOH . 
K 9 HOH B 44 344 216 HOH HOH . 
K 9 HOH B 45 345 131 HOH HOH . 
K 9 HOH B 46 346 126 HOH HOH . 
K 9 HOH B 47 347 202 HOH HOH . 
K 9 HOH B 48 348 178 HOH HOH . 
K 9 HOH B 49 349 122 HOH HOH . 
K 9 HOH B 50 350 166 HOH HOH . 
K 9 HOH B 51 351 180 HOH HOH . 
K 9 HOH B 52 352 193 HOH HOH . 
K 9 HOH B 53 353 128 HOH HOH . 
K 9 HOH B 54 354 159 HOH HOH . 
K 9 HOH B 55 355 226 HOH HOH . 
K 9 HOH B 56 356 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . I 8 -5.333 -16.84 13.949 1 31.03 ? C1 MLA 201 B 1 
HETATM 2 O O1A MLA . . . I 8 -5.555 -17.386 15.051 1 31.62 ? O1A MLA 201 B 1 
HETATM 3 O O1B MLA . . . I 8 -4.549 -17.378 13.115 1 31.89 -1 O1B MLA 201 B 1 
HETATM 4 C C2 MLA . . . I 8 -6.004 -15.499 13.649 1 30.85 ? C2 MLA 201 B 1 
HETATM 5 C C3 MLA . . . I 8 -5.059 -14.363 14.026 1 34.04 ? C3 MLA 201 B 1 
HETATM 6 O O3A MLA . . . I 8 -3.82 -14.583 14.159 1 38.39 -1 O3A MLA 201 B 1 
HETATM 7 O O3B MLA . . . I 8 -5.505 -13.208 14.205 1 32.08 ? O3B MLA 201 B 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#