data_7MXF # _model_server_result.job_id '_r-S7Bd08wwV4axgKDEoNA' _model_server_result.datetime_utc '2024-12-27 13:37:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 7MXF # _exptl.entry_id 7MXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MXF _cell.length_a 55.224 _cell.length_b 71.363 _cell.length_c 100.032 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 102 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 B SG CYS 28 B CYS 26 1_555 B SG CYS 83 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 83 n n C1 H11 D12 sing 84 n n C1 H12 D12 sing 85 n n C1 H13 D12 sing 86 n n C2 C3 D12 sing 87 n n C2 H21 D12 sing 88 n n C2 H22 D12 sing 89 n n C3 C4 D12 sing 90 n n C3 H31 D12 sing 91 n n C3 H32 D12 sing 92 n n C4 C5 D12 sing 93 n n C4 H41 D12 sing 94 n n C4 H42 D12 sing 95 n n C5 C6 D12 sing 96 n n C5 H51 D12 sing 97 n n C5 H52 D12 sing 98 n n C6 C7 D12 sing 99 n n C6 H61 D12 sing 100 n n C6 H62 D12 sing 101 n n C7 C8 D12 sing 102 n n C7 H71 D12 sing 103 n n C7 H72 D12 sing 104 n n C8 C9 D12 sing 105 n n C8 H81 D12 sing 106 n n C8 H82 D12 sing 107 n n C9 C10 D12 sing 108 n n C9 H91 D12 sing 109 n n C9 H92 D12 sing 110 n n C10 C11 D12 sing 111 n n C10 H101 D12 sing 112 n n C10 H102 D12 sing 113 n n C11 C12 D12 sing 114 n n C11 H111 D12 sing 115 n n C11 H112 D12 sing 116 n n C12 H121 D12 sing 117 n n C12 H122 D12 sing 118 n n C12 H123 D12 sing 119 n n # _atom_sites.entry_id 7MXF _atom_sites.fract_transf_matrix[1][1] 0.018108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 283 NAG NAG . D 4 NHE A 1 302 1 NHE CES . E 5 ZQ4 A 1 303 1 ZQ4 176 . F 6 D12 A 1 304 2 D12 SPL . G 7 ZP7 A 1 305 3 ZP7 2PG . H 8 MLA B 1 201 2 MLA MAL . I 9 HOH A 1 401 33 HOH HOH . I 9 HOH A 2 402 46 HOH HOH . I 9 HOH A 3 403 74 HOH HOH . I 9 HOH A 4 404 18 HOH HOH . I 9 HOH A 5 405 93 HOH HOH . I 9 HOH A 6 406 23 HOH HOH . I 9 HOH A 7 407 81 HOH HOH . I 9 HOH A 8 408 101 HOH HOH . I 9 HOH A 9 409 106 HOH HOH . I 9 HOH A 10 410 111 HOH HOH . I 9 HOH A 11 411 26 HOH HOH . I 9 HOH A 12 412 28 HOH HOH . I 9 HOH A 13 413 35 HOH HOH . I 9 HOH A 14 414 128 HOH HOH . I 9 HOH A 15 415 53 HOH HOH . I 9 HOH A 16 416 25 HOH HOH . I 9 HOH A 17 417 59 HOH HOH . I 9 HOH A 18 418 55 HOH HOH . I 9 HOH A 19 419 109 HOH HOH . I 9 HOH A 20 420 76 HOH HOH . I 9 HOH A 21 421 65 HOH HOH . I 9 HOH A 22 422 116 HOH HOH . I 9 HOH A 23 423 22 HOH HOH . I 9 HOH A 24 424 29 HOH HOH . I 9 HOH A 25 425 16 HOH HOH . I 9 HOH A 26 426 15 HOH HOH . I 9 HOH A 27 427 72 HOH HOH . I 9 HOH A 28 428 119 HOH HOH . I 9 HOH A 29 429 87 HOH HOH . I 9 HOH A 30 430 14 HOH HOH . I 9 HOH A 31 431 127 HOH HOH . I 9 HOH A 32 432 118 HOH HOH . I 9 HOH A 33 433 3 HOH HOH . I 9 HOH A 34 434 17 HOH HOH . I 9 HOH A 35 435 100 HOH HOH . I 9 HOH A 36 436 12 HOH HOH . I 9 HOH A 37 437 48 HOH HOH . I 9 HOH A 38 438 88 HOH HOH . I 9 HOH A 39 439 44 HOH HOH . I 9 HOH A 40 440 7 HOH HOH . I 9 HOH A 41 441 104 HOH HOH . I 9 HOH A 42 442 9 HOH HOH . I 9 HOH A 43 443 126 HOH HOH . I 9 HOH A 44 444 58 HOH HOH . I 9 HOH A 45 445 117 HOH HOH . I 9 HOH A 46 446 112 HOH HOH . I 9 HOH A 47 447 37 HOH HOH . I 9 HOH A 48 448 113 HOH HOH . I 9 HOH A 49 449 71 HOH HOH . I 9 HOH A 50 450 83 HOH HOH . I 9 HOH A 51 451 47 HOH HOH . I 9 HOH A 52 452 8 HOH HOH . I 9 HOH A 53 453 70 HOH HOH . I 9 HOH A 54 454 40 HOH HOH . I 9 HOH A 55 455 130 HOH HOH . I 9 HOH A 56 456 86 HOH HOH . I 9 HOH A 57 457 97 HOH HOH . I 9 HOH A 58 458 5 HOH HOH . I 9 HOH A 59 459 134 HOH HOH . I 9 HOH A 60 460 6 HOH HOH . I 9 HOH A 61 461 85 HOH HOH . I 9 HOH A 62 462 2 HOH HOH . I 9 HOH A 63 463 69 HOH HOH . I 9 HOH A 64 464 79 HOH HOH . I 9 HOH A 65 465 24 HOH HOH . I 9 HOH A 66 466 56 HOH HOH . I 9 HOH A 67 467 39 HOH HOH . I 9 HOH A 68 468 38 HOH HOH . I 9 HOH A 69 469 95 HOH HOH . I 9 HOH A 70 470 132 HOH HOH . I 9 HOH A 71 471 103 HOH HOH . I 9 HOH A 72 472 90 HOH HOH . I 9 HOH A 73 473 49 HOH HOH . I 9 HOH A 74 474 43 HOH HOH . I 9 HOH A 75 475 123 HOH HOH . I 9 HOH A 76 476 57 HOH HOH . I 9 HOH A 77 477 61 HOH HOH . I 9 HOH A 78 478 10 HOH HOH . I 9 HOH A 79 479 94 HOH HOH . I 9 HOH A 80 480 68 HOH HOH . I 9 HOH A 81 481 54 HOH HOH . I 9 HOH A 82 482 89 HOH HOH . I 9 HOH A 83 483 20 HOH HOH . I 9 HOH A 84 484 107 HOH HOH . I 9 HOH A 85 485 13 HOH HOH . I 9 HOH A 86 486 60 HOH HOH . I 9 HOH A 87 487 121 HOH HOH . I 9 HOH A 88 488 99 HOH HOH . I 9 HOH A 89 489 137 HOH HOH . I 9 HOH A 90 490 102 HOH HOH . I 9 HOH A 91 491 30 HOH HOH . I 9 HOH A 92 492 66 HOH HOH . I 9 HOH A 93 493 78 HOH HOH . I 9 HOH A 94 494 84 HOH HOH . I 9 HOH A 95 495 115 HOH HOH . I 9 HOH A 96 496 51 HOH HOH . I 9 HOH A 97 497 129 HOH HOH . I 9 HOH A 98 498 64 HOH HOH . I 9 HOH A 99 499 105 HOH HOH . I 9 HOH A 100 500 110 HOH HOH . I 9 HOH A 101 501 92 HOH HOH . I 9 HOH A 102 502 80 HOH HOH . I 9 HOH A 103 503 133 HOH HOH . I 9 HOH A 104 504 108 HOH HOH . J 9 HOH B 1 301 98 HOH HOH . J 9 HOH B 2 302 45 HOH HOH . J 9 HOH B 3 303 120 HOH HOH . J 9 HOH B 4 304 11 HOH HOH . J 9 HOH B 5 305 82 HOH HOH . J 9 HOH B 6 306 4 HOH HOH . J 9 HOH B 7 307 122 HOH HOH . J 9 HOH B 8 308 27 HOH HOH . J 9 HOH B 9 309 21 HOH HOH . J 9 HOH B 10 310 63 HOH HOH . J 9 HOH B 11 311 91 HOH HOH . J 9 HOH B 12 312 62 HOH HOH . J 9 HOH B 13 313 36 HOH HOH . J 9 HOH B 14 314 135 HOH HOH . J 9 HOH B 15 315 114 HOH HOH . J 9 HOH B 16 316 1 HOH HOH . J 9 HOH B 17 317 19 HOH HOH . J 9 HOH B 18 318 41 HOH HOH . J 9 HOH B 19 319 31 HOH HOH . J 9 HOH B 20 320 34 HOH HOH . J 9 HOH B 21 321 32 HOH HOH . J 9 HOH B 22 322 96 HOH HOH . J 9 HOH B 23 323 73 HOH HOH . J 9 HOH B 24 324 125 HOH HOH . J 9 HOH B 25 325 52 HOH HOH . J 9 HOH B 26 326 77 HOH HOH . J 9 HOH B 27 327 124 HOH HOH . J 9 HOH B 28 328 42 HOH HOH . J 9 HOH B 29 329 50 HOH HOH . J 9 HOH B 30 330 75 HOH HOH . J 9 HOH B 31 331 67 HOH HOH . J 9 HOH B 32 332 131 HOH HOH . J 9 HOH B 33 333 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . F 6 -18.999 -40.587 27.575 1 43.09 ? C1 D12 304 A 1 HETATM 2 C C2 D12 . . . F 6 -18.096 -40.588 28.803 1 46.43 ? C2 D12 304 A 1 HETATM 3 C C3 D12 . . . F 6 -18.341 -39.342 29.643 1 44.97 ? C3 D12 304 A 1 HETATM 4 C C4 D12 . . . F 6 -17.943 -38.08 28.899 1 41.2 ? C4 D12 304 A 1 HETATM 5 C C5 D12 . . . F 6 -18.197 -36.826 29.733 1 40.82 ? C5 D12 304 A 1 HETATM 6 C C6 D12 . . . F 6 -17.113 -36.612 30.786 1 37.87 ? C6 D12 304 A 1 HETATM 7 C C7 D12 . . . F 6 -16.917 -35.143 31.136 1 38 ? C7 D12 304 A 1 HETATM 8 C C8 D12 . . . F 6 -15.975 -34.947 32.326 1 38.33 ? C8 D12 304 A 1 HETATM 9 C C9 D12 . . . F 6 -15.621 -33.483 32.571 1 38.35 ? C9 D12 304 A 1 HETATM 10 C C10 D12 . . . F 6 -14.762 -33.323 33.829 1 40.02 ? C10 D12 304 A 1 HETATM 11 C C11 D12 . . . F 6 -14.002 -31.998 33.862 1 41.72 ? C11 D12 304 A 1 HETATM 12 C C12 D12 . . . F 6 -12.836 -32.011 34.848 1 40.66 ? C12 D12 304 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #