data_7MXH # _model_server_result.job_id Sl_Gkt3kO8Ys4XgzjVsycQ _model_server_result.datetime_utc '2024-11-08 06:52:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 7MXH # _exptl.entry_id 7MXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MXH _cell.length_a 55.569 _cell.length_b 72.734 _cell.length_c 98.922 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 102 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 28 B CYS 26 1_555 B SG CYS 83 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 274 n n C1 O1B MLA doub 275 n n C1 C2 MLA sing 276 n n O1A H1A MLA sing 277 n n C2 C3 MLA sing 278 n n C2 HC21 MLA sing 279 n n C2 HC22 MLA sing 280 n n C3 O3A MLA doub 281 n n C3 O3B MLA sing 282 n n O3B H3B MLA sing 283 n n # _atom_sites.entry_id 7MXH _atom_sites.fract_transf_matrix[1][1] 0.017996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 287 NAG NAG . D 4 ZQ7 A 1 302 1 ZQ7 392 . E 5 D12 A 1 303 2 D12 SPL . F 6 ZP7 A 1 304 3 ZP7 2PG . G 7 MLA A 1 305 2 MLA MAL . H 7 MLA B 1 201 3 MLA MAL . I 8 HOH A 1 401 109 HOH HOH . I 8 HOH A 2 402 84 HOH HOH . I 8 HOH A 3 403 67 HOH HOH . I 8 HOH A 4 404 111 HOH HOH . I 8 HOH A 5 405 85 HOH HOH . I 8 HOH A 6 406 65 HOH HOH . I 8 HOH A 7 407 47 HOH HOH . I 8 HOH A 8 408 87 HOH HOH . I 8 HOH A 9 409 10 HOH HOH . I 8 HOH A 10 410 16 HOH HOH . I 8 HOH A 11 411 107 HOH HOH . I 8 HOH A 12 412 3 HOH HOH . I 8 HOH A 13 413 4 HOH HOH . I 8 HOH A 14 414 15 HOH HOH . I 8 HOH A 15 415 119 HOH HOH . I 8 HOH A 16 416 77 HOH HOH . I 8 HOH A 17 417 41 HOH HOH . I 8 HOH A 18 418 73 HOH HOH . I 8 HOH A 19 419 11 HOH HOH . I 8 HOH A 20 420 28 HOH HOH . I 8 HOH A 21 421 45 HOH HOH . I 8 HOH A 22 422 61 HOH HOH . I 8 HOH A 23 423 7 HOH HOH . I 8 HOH A 24 424 9 HOH HOH . I 8 HOH A 25 425 38 HOH HOH . I 8 HOH A 26 426 36 HOH HOH . I 8 HOH A 27 427 19 HOH HOH . I 8 HOH A 28 428 59 HOH HOH . I 8 HOH A 29 429 20 HOH HOH . I 8 HOH A 30 430 46 HOH HOH . I 8 HOH A 31 431 43 HOH HOH . I 8 HOH A 32 432 35 HOH HOH . I 8 HOH A 33 433 88 HOH HOH . I 8 HOH A 34 434 69 HOH HOH . I 8 HOH A 35 435 22 HOH HOH . I 8 HOH A 36 436 21 HOH HOH . I 8 HOH A 37 437 62 HOH HOH . I 8 HOH A 38 438 63 HOH HOH . I 8 HOH A 39 439 31 HOH HOH . I 8 HOH A 40 440 42 HOH HOH . I 8 HOH A 41 441 29 HOH HOH . I 8 HOH A 42 442 17 HOH HOH . I 8 HOH A 43 443 30 HOH HOH . I 8 HOH A 44 444 34 HOH HOH . I 8 HOH A 45 445 112 HOH HOH . I 8 HOH A 46 446 14 HOH HOH . I 8 HOH A 47 447 25 HOH HOH . I 8 HOH A 48 448 50 HOH HOH . I 8 HOH A 49 449 72 HOH HOH . I 8 HOH A 50 450 94 HOH HOH . I 8 HOH A 51 451 76 HOH HOH . I 8 HOH A 52 452 57 HOH HOH . I 8 HOH A 53 453 100 HOH HOH . I 8 HOH A 54 454 55 HOH HOH . I 8 HOH A 55 455 24 HOH HOH . I 8 HOH A 56 456 101 HOH HOH . I 8 HOH A 57 457 114 HOH HOH . I 8 HOH A 58 458 33 HOH HOH . I 8 HOH A 59 459 98 HOH HOH . I 8 HOH A 60 460 44 HOH HOH . I 8 HOH A 61 461 5 HOH HOH . I 8 HOH A 62 462 54 HOH HOH . I 8 HOH A 63 463 86 HOH HOH . I 8 HOH A 64 464 89 HOH HOH . I 8 HOH A 65 465 104 HOH HOH . I 8 HOH A 66 466 95 HOH HOH . I 8 HOH A 67 467 52 HOH HOH . I 8 HOH A 68 468 37 HOH HOH . I 8 HOH A 69 469 80 HOH HOH . I 8 HOH A 70 470 51 HOH HOH . I 8 HOH A 71 471 108 HOH HOH . I 8 HOH A 72 472 115 HOH HOH . I 8 HOH A 73 473 75 HOH HOH . I 8 HOH A 74 474 97 HOH HOH . I 8 HOH A 75 475 110 HOH HOH . I 8 HOH A 76 476 93 HOH HOH . I 8 HOH A 77 477 82 HOH HOH . I 8 HOH A 78 478 116 HOH HOH . I 8 HOH A 79 479 99 HOH HOH . I 8 HOH A 80 480 90 HOH HOH . I 8 HOH A 81 481 78 HOH HOH . I 8 HOH A 82 482 79 HOH HOH . I 8 HOH A 83 483 83 HOH HOH . I 8 HOH A 84 484 121 HOH HOH . I 8 HOH A 85 485 103 HOH HOH . I 8 HOH A 86 486 91 HOH HOH . I 8 HOH A 87 487 92 HOH HOH . I 8 HOH A 88 488 53 HOH HOH . J 8 HOH B 1 301 2 HOH HOH . J 8 HOH B 2 302 56 HOH HOH . J 8 HOH B 3 303 113 HOH HOH . J 8 HOH B 4 304 60 HOH HOH . J 8 HOH B 5 305 70 HOH HOH . J 8 HOH B 6 306 39 HOH HOH . J 8 HOH B 7 307 12 HOH HOH . J 8 HOH B 8 308 118 HOH HOH . J 8 HOH B 9 309 105 HOH HOH . J 8 HOH B 10 310 6 HOH HOH . J 8 HOH B 11 311 23 HOH HOH . J 8 HOH B 12 312 8 HOH HOH . J 8 HOH B 13 313 68 HOH HOH . J 8 HOH B 14 314 32 HOH HOH . J 8 HOH B 15 315 13 HOH HOH . J 8 HOH B 16 316 120 HOH HOH . J 8 HOH B 17 317 27 HOH HOH . J 8 HOH B 18 318 1 HOH HOH . J 8 HOH B 19 319 66 HOH HOH . J 8 HOH B 20 320 64 HOH HOH . J 8 HOH B 21 321 18 HOH HOH . J 8 HOH B 22 322 106 HOH HOH . J 8 HOH B 23 323 48 HOH HOH . J 8 HOH B 24 324 71 HOH HOH . J 8 HOH B 25 325 26 HOH HOH . J 8 HOH B 26 326 40 HOH HOH . J 8 HOH B 27 327 102 HOH HOH . J 8 HOH B 28 328 74 HOH HOH . J 8 HOH B 29 329 117 HOH HOH . J 8 HOH B 30 330 58 HOH HOH . J 8 HOH B 31 331 49 HOH HOH . J 8 HOH B 32 332 96 HOH HOH . J 8 HOH B 33 333 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . G 7 -4.126 -6.231 17.442 1 57.04 ? C1 MLA 305 A 1 HETATM 2 O O1A MLA . . . G 7 -3.845 -7.334 17.995 1 53.35 ? O1A MLA 305 A 1 HETATM 3 O O1B MLA . . . G 7 -3.528 -5.904 16.383 1 57.19 -1 O1B MLA 305 A 1 HETATM 4 C C2 MLA . . . G 7 -5.162 -5.263 18.029 1 55.08 ? C2 MLA 305 A 1 HETATM 5 C C3 MLA . . . G 7 -6.396 -5.884 18.7 1 56.88 ? C3 MLA 305 A 1 HETATM 6 O O3A MLA . . . G 7 -7.395 -5.158 18.945 1 57.82 ? O3A MLA 305 A 1 HETATM 7 O O3B MLA . . . G 7 -6.446 -7.1 19.035 1 54.34 -1 O3B MLA 305 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #