data_7MXK # _model_server_result.job_id 7sLjA-4WJxxjYPrlEgq6-Q _model_server_result.datetime_utc '2024-12-02 07:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7MXK # _exptl.entry_id 7MXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.493 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "MAGNESIUM-5'-ADENYLY-IMIDO-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MXK _cell.length_a 37.807 _cell.length_b 54.594 _cell.length_c 146.492 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 173 A ASP 301 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc2 A OE2 GLU 177 A GLU 305 1_555 C MG MAP . A MAP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 A OD2 ASP 190 A ASP 318 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc4 B MG MG . A MG 501 1_555 C O3G MAP . A MAP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc5 B MG MG . A MG 501 1_555 D O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 B MG MG . A MG 501 1_555 D O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc7 B MG MG . A MG 501 1_555 D O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc8 C MG MAP . A MAP 502 1_555 D O HOH . A HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc9 C MG MAP . A MAP 502 1_555 D O HOH . A HOH 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C10 H16 Mg N6 O12 P3' _chem_comp.formula_weight 529.493 _chem_comp.id MAP _chem_comp.mon_nstd_flag . _chem_comp.name "MAGNESIUM-5'-ADENYLY-IMIDO-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MAP doub 218 n n PG O2G MAP sing 219 n n PG O3G MAP sing 220 n n PG N3B MAP sing 221 n n O2G HOG2 MAP sing 222 n n O3G HOG3 MAP sing 223 n n PB O1B MAP doub 224 n n PB O2B MAP sing 225 n n PB N3B MAP sing 226 n n PB O3A MAP sing 227 n n O2B HOB2 MAP sing 228 n n N3B HNB1 MAP sing 229 n n PA O1A MAP doub 230 n n PA O2A MAP sing 231 n n PA O3A MAP sing 232 n n PA O5' MAP sing 233 n n O2A MG MAP sing 234 n n O5' C5' MAP sing 235 n n C5' C4' MAP sing 236 n n C5' "H5'1" MAP sing 237 n n C5' "H5'2" MAP sing 238 n n C4' O4' MAP sing 239 n n C4' C3' MAP sing 240 n n C4' H4' MAP sing 241 n n O4' C1' MAP sing 242 n n C3' O3' MAP sing 243 n n C3' C2' MAP sing 244 n n C3' H3' MAP sing 245 n n O3' HO3' MAP sing 246 n n C2' O2' MAP sing 247 n n C2' C1' MAP sing 248 n n C2' H2' MAP sing 249 n n O2' HO2' MAP sing 250 n n C1' N9 MAP sing 251 n n C1' H1' MAP sing 252 n n N9 C8 MAP sing 253 n y N9 C4 MAP sing 254 n y C8 N7 MAP doub 255 n y C8 H8 MAP sing 256 n n N7 C5 MAP sing 257 n y C5 C6 MAP sing 258 n y C5 C4 MAP doub 259 n y C6 N6 MAP sing 260 n n C6 N1 MAP doub 261 n y N6 HN61 MAP sing 262 n n N6 HN62 MAP sing 263 n n N1 C2 MAP sing 264 n y C2 N3 MAP doub 265 n y C2 H2 MAP sing 266 n n N3 C4 MAP sing 267 n y # _atom_sites.entry_id 7MXK _atom_sites.fract_transf_matrix[1][1] 0.02645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 1 MG MG . C 3 MAP A 1 502 1 MAP MAP . D 4 HOH A 1 601 57 HOH HOH . D 4 HOH A 2 602 99 HOH HOH . D 4 HOH A 3 603 129 HOH HOH . D 4 HOH A 4 604 132 HOH HOH . D 4 HOH A 5 605 80 HOH HOH . D 4 HOH A 6 606 121 HOH HOH . D 4 HOH A 7 607 44 HOH HOH . D 4 HOH A 8 608 18 HOH HOH . D 4 HOH A 9 609 51 HOH HOH . D 4 HOH A 10 610 55 HOH HOH . D 4 HOH A 11 611 120 HOH HOH . D 4 HOH A 12 612 102 HOH HOH . D 4 HOH A 13 613 157 HOH HOH . D 4 HOH A 14 614 138 HOH HOH . D 4 HOH A 15 615 26 HOH HOH . D 4 HOH A 16 616 32 HOH HOH . D 4 HOH A 17 617 20 HOH HOH . D 4 HOH A 18 618 75 HOH HOH . D 4 HOH A 19 619 1 HOH HOH . D 4 HOH A 20 620 7 HOH HOH . D 4 HOH A 21 621 66 HOH HOH . D 4 HOH A 22 622 89 HOH HOH . D 4 HOH A 23 623 64 HOH HOH . D 4 HOH A 24 624 27 HOH HOH . D 4 HOH A 25 625 52 HOH HOH . D 4 HOH A 26 626 141 HOH HOH . D 4 HOH A 27 627 12 HOH HOH . D 4 HOH A 28 628 38 HOH HOH . D 4 HOH A 29 629 113 HOH HOH . D 4 HOH A 30 630 59 HOH HOH . D 4 HOH A 31 631 69 HOH HOH . D 4 HOH A 32 632 3 HOH HOH . D 4 HOH A 33 633 95 HOH HOH . D 4 HOH A 34 634 47 HOH HOH . D 4 HOH A 35 635 81 HOH HOH . D 4 HOH A 36 636 29 HOH HOH . D 4 HOH A 37 637 14 HOH HOH . D 4 HOH A 38 638 67 HOH HOH . D 4 HOH A 39 639 22 HOH HOH . D 4 HOH A 40 640 10 HOH HOH . D 4 HOH A 41 641 172 HOH HOH . D 4 HOH A 42 642 35 HOH HOH . D 4 HOH A 43 643 149 HOH HOH . D 4 HOH A 44 644 13 HOH HOH . D 4 HOH A 45 645 19 HOH HOH . D 4 HOH A 46 646 115 HOH HOH . D 4 HOH A 47 647 85 HOH HOH . D 4 HOH A 48 648 70 HOH HOH . D 4 HOH A 49 649 151 HOH HOH . D 4 HOH A 50 650 148 HOH HOH . D 4 HOH A 51 651 54 HOH HOH . D 4 HOH A 52 652 24 HOH HOH . D 4 HOH A 53 653 74 HOH HOH . D 4 HOH A 54 654 43 HOH HOH . D 4 HOH A 55 655 146 HOH HOH . D 4 HOH A 56 656 94 HOH HOH . D 4 HOH A 57 657 135 HOH HOH . D 4 HOH A 58 658 147 HOH HOH . D 4 HOH A 59 659 73 HOH HOH . D 4 HOH A 60 660 5 HOH HOH . D 4 HOH A 61 661 34 HOH HOH . D 4 HOH A 62 662 41 HOH HOH . D 4 HOH A 63 663 28 HOH HOH . D 4 HOH A 64 664 72 HOH HOH . D 4 HOH A 65 665 60 HOH HOH . D 4 HOH A 66 666 56 HOH HOH . D 4 HOH A 67 667 78 HOH HOH . D 4 HOH A 68 668 71 HOH HOH . D 4 HOH A 69 669 174 HOH HOH . D 4 HOH A 70 670 65 HOH HOH . D 4 HOH A 71 671 84 HOH HOH . D 4 HOH A 72 672 17 HOH HOH . D 4 HOH A 73 673 42 HOH HOH . D 4 HOH A 74 674 40 HOH HOH . D 4 HOH A 75 675 127 HOH HOH . D 4 HOH A 76 676 45 HOH HOH . D 4 HOH A 77 677 15 HOH HOH . D 4 HOH A 78 678 4 HOH HOH . D 4 HOH A 79 679 8 HOH HOH . D 4 HOH A 80 680 139 HOH HOH . D 4 HOH A 81 681 21 HOH HOH . D 4 HOH A 82 682 50 HOH HOH . D 4 HOH A 83 683 126 HOH HOH . D 4 HOH A 84 684 92 HOH HOH . D 4 HOH A 85 685 6 HOH HOH . D 4 HOH A 86 686 46 HOH HOH . D 4 HOH A 87 687 39 HOH HOH . D 4 HOH A 88 688 53 HOH HOH . D 4 HOH A 89 689 123 HOH HOH . D 4 HOH A 90 690 83 HOH HOH . D 4 HOH A 91 691 31 HOH HOH . D 4 HOH A 92 692 165 HOH HOH . D 4 HOH A 93 693 90 HOH HOH . D 4 HOH A 94 694 11 HOH HOH . D 4 HOH A 95 695 36 HOH HOH . D 4 HOH A 96 696 62 HOH HOH . D 4 HOH A 97 697 76 HOH HOH . D 4 HOH A 98 698 30 HOH HOH . D 4 HOH A 99 699 136 HOH HOH . D 4 HOH A 100 700 98 HOH HOH . D 4 HOH A 101 701 160 HOH HOH . D 4 HOH A 102 702 33 HOH HOH . D 4 HOH A 103 703 173 HOH HOH . D 4 HOH A 104 704 154 HOH HOH . D 4 HOH A 105 705 124 HOH HOH . D 4 HOH A 106 706 79 HOH HOH . D 4 HOH A 107 707 137 HOH HOH . D 4 HOH A 108 708 48 HOH HOH . D 4 HOH A 109 709 63 HOH HOH . D 4 HOH A 110 710 77 HOH HOH . D 4 HOH A 111 711 68 HOH HOH . D 4 HOH A 112 712 101 HOH HOH . D 4 HOH A 113 713 23 HOH HOH . D 4 HOH A 114 714 2 HOH HOH . D 4 HOH A 115 715 134 HOH HOH . D 4 HOH A 116 716 106 HOH HOH . D 4 HOH A 117 717 16 HOH HOH . D 4 HOH A 118 718 108 HOH HOH . D 4 HOH A 119 719 49 HOH HOH . D 4 HOH A 120 720 122 HOH HOH . D 4 HOH A 121 721 162 HOH HOH . D 4 HOH A 122 722 142 HOH HOH . D 4 HOH A 123 723 88 HOH HOH . D 4 HOH A 124 724 140 HOH HOH . D 4 HOH A 125 725 91 HOH HOH . D 4 HOH A 126 726 100 HOH HOH . D 4 HOH A 127 727 87 HOH HOH . D 4 HOH A 128 728 114 HOH HOH . D 4 HOH A 129 729 181 HOH HOH . D 4 HOH A 130 730 97 HOH HOH . D 4 HOH A 131 731 61 HOH HOH . D 4 HOH A 132 732 103 HOH HOH . D 4 HOH A 133 733 177 HOH HOH . D 4 HOH A 134 734 175 HOH HOH . D 4 HOH A 135 735 110 HOH HOH . D 4 HOH A 136 736 58 HOH HOH . D 4 HOH A 137 737 145 HOH HOH . D 4 HOH A 138 738 153 HOH HOH . D 4 HOH A 139 739 112 HOH HOH . D 4 HOH A 140 740 182 HOH HOH . D 4 HOH A 141 741 176 HOH HOH . D 4 HOH A 142 742 163 HOH HOH . D 4 HOH A 143 743 161 HOH HOH . D 4 HOH A 144 744 86 HOH HOH . D 4 HOH A 145 745 164 HOH HOH . D 4 HOH A 146 746 167 HOH HOH . D 4 HOH A 147 747 169 HOH HOH . D 4 HOH A 148 748 158 HOH HOH . D 4 HOH A 149 749 159 HOH HOH . D 4 HOH A 150 750 104 HOH HOH . D 4 HOH A 151 751 37 HOH HOH . D 4 HOH A 152 752 170 HOH HOH . D 4 HOH A 153 753 155 HOH HOH . D 4 HOH A 154 754 179 HOH HOH . D 4 HOH A 155 755 183 HOH HOH . D 4 HOH A 156 756 171 HOH HOH . D 4 HOH A 157 757 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MAP . . . C 3 2.71 25.976 -20.674 1 25.78 ? PG MAP 502 A 1 HETATM 2 O O1G MAP . . . C 3 3.575 26.849 -21.495 1 29.79 ? O1G MAP 502 A 1 HETATM 3 O O2G MAP . . . C 3 3.532 24.751 -20.045 1 24.11 ? O2G MAP 502 A 1 HETATM 4 O O3G MAP . . . C 3 1.528 25.389 -21.596 1 22.59 ? O3G MAP 502 A 1 HETATM 5 P PB MAP . . . C 3 2.741 27.155 -18.038 1 29.99 ? PB MAP 502 A 1 HETATM 6 O O1B MAP . . . C 3 4.174 26.787 -18.053 1 28.89 ? O1B MAP 502 A 1 HETATM 7 O O2B MAP . . . C 3 2.565 28.718 -17.712 1 37.92 ? O2B MAP 502 A 1 HETATM 8 N N3B MAP . . . C 3 2.001 26.809 -19.457 1 27.4 ? N3B MAP 502 A 1 HETATM 9 P PA MAP . . . C 3 1.973 24.743 -16.616 1 30.13 ? PA MAP 502 A 1 HETATM 10 O O1A MAP . . . C 3 0.682 24.136 -17.013 1 32.25 ? O1A MAP 502 A 1 HETATM 11 O O2A MAP . . . C 3 3.123 24.036 -17.28 1 25.36 ? O2A MAP 502 A 1 HETATM 12 O O3A MAP . . . C 3 1.945 26.311 -16.941 1 28.84 ? O3A MAP 502 A 1 HETATM 13 O O5' MAP . . . C 3 2.194 24.606 -15.03 1 33.94 ? O5' MAP 502 A 1 HETATM 14 C C5' MAP . . . C 3 3.425 24.979 -14.419 1 35.09 ? C5' MAP 502 A 1 HETATM 15 C C4' MAP . . . C 3 3.478 24.366 -13.026 1 35.68 ? C4' MAP 502 A 1 HETATM 16 O O4' MAP . . . C 3 2.468 24.957 -12.222 1 35.75 ? O4' MAP 502 A 1 HETATM 17 C C3' MAP . . . C 3 3.084 22.895 -13.072 1 35.54 ? C3' MAP 502 A 1 HETATM 18 O O3' MAP . . . C 3 4.21 22.047 -13.337 1 36.36 ? O3' MAP 502 A 1 HETATM 19 C C2' MAP . . . C 3 2.561 22.651 -11.661 1 39.63 ? C2' MAP 502 A 1 HETATM 20 O O2' MAP . . . C 3 3.664 22.366 -10.793 1 38.91 ? O2' MAP 502 A 1 HETATM 21 C C1' MAP . . . C 3 1.988 24.013 -11.273 1 39.2 ? C1' MAP 502 A 1 HETATM 22 N N9 MAP . . . C 3 0.508 23.97 -11.355 1 38.62 ? N9 MAP 502 A 1 HETATM 23 C C8 MAP . . . C 3 -0.234 24.471 -12.353 1 35.83 ? C8 MAP 502 A 1 HETATM 24 N N7 MAP . . . C 3 -1.543 24.251 -12.09 1 35.99 ? N7 MAP 502 A 1 HETATM 25 C C5 MAP . . . C 3 -1.611 23.605 -10.911 1 35.38 ? C5 MAP 502 A 1 HETATM 26 C C6 MAP . . . C 3 -2.738 23.09 -10.089 1 35.91 ? C6 MAP 502 A 1 HETATM 27 N N6 MAP . . . C 3 -4.024 23.236 -10.49 1 35.19 ? N6 MAP 502 A 1 HETATM 28 N N1 MAP . . . C 3 -2.444 22.474 -8.93 1 38.18 ? N1 MAP 502 A 1 HETATM 29 C C2 MAP . . . C 3 -1.158 22.358 -8.585 1 40.32 ? C2 MAP 502 A 1 HETATM 30 N N3 MAP . . . C 3 -0.097 22.796 -9.269 1 39.45 ? N3 MAP 502 A 1 HETATM 31 C C4 MAP . . . C 3 -0.309 23.429 -10.448 1 36.8 ? C4 MAP 502 A 1 HETATM 32 MG MG MAP . . . C 3 4.547 24.927 -18.317 1 29.25 ? MG MAP 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #