data_7MXT # _model_server_result.job_id m6p2rfBx42NzZ7FdzekHBg _model_server_result.datetime_utc '2025-03-05 02:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mxt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7MXT # _exptl.entry_id 7MXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MXT _cell.length_a 72.857 _cell.length_b 72.857 _cell.length_c 181.382 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 152 Z ASP 152 1_555 D MN MN . Z MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OD1 ASP 152 Z ASP 152 1_555 G MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 A OD2 ASP 171 Z ASP 171 1_555 D MN MN . Z MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc4 A OD1 ASP 173 Z ASP 173 1_555 D MN MN . Z MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc5 A OD1 ASP 173 Z ASP 173 1_555 E MN MN . Z MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc6 A O SER 222 Z SER 222 1_555 F NA NA . Z NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 A OD1 ASP 225 Z ASP 225 1_555 E MN MN . Z MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc8 A OG SER 229 Z SER 229 1_555 F NA NA . Z NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc9 A O ILE 233 Z ILE 233 1_555 F NA NA . Z NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc10 D MN MN . Z MN 401 1_555 H O HOH . Z HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc11 D MN MN . Z MN 401 1_555 C OP3 DC 1 B DC 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.318 ? metalc ? metalc12 D MN MN . Z MN 401 1_555 C OP1 DC 1 B DC 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.428 ? metalc ? metalc13 D MN MN . Z MN 401 1_555 C OP2 DC 1 B DC 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.206 ? metalc ? metalc14 E MN MN . Z MN 402 1_555 C OP3 DC 1 B DC 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.112 ? metalc ? metalc15 E MN MN . Z MN 402 1_555 C OP1 DC 1 B DC 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.065 ? metalc ? metalc16 E MN MN . Z MN 402 1_555 C OP2 DC 1 B DC 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.182 ? metalc ? metalc17 E MN MN . Z MN 402 1_555 J O HOH . B HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc18 F NA NA . Z NA 403 1_555 H O HOH . Z HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc19 F NA NA . Z NA 403 1_555 B OP1 DT 4 A DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc20 F NA NA . Z NA 403 1_555 B OP2 DT 4 A DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc21 F NA NA . Z NA 403 1_555 I O HOH . A HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc22 H O HOH . Z HOH 520 1_555 G MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc23 H O HOH . Z HOH 524 1_555 G MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc24 C OP3 DC 1 B DC 1 1_555 G MN MN . B MN 101 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc25 G MN MN . B MN 101 1_555 J O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc26 G MN MN . B MN 101 1_555 J O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 A DC 1 1_555 C N1 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 A DC 1 1_555 C O6 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 A DC 1 1_555 C N2 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 A DG 2 1_555 C N3 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 A DG 2 1_555 C O2 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 A DG 2 1_555 C N4 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 3 A DC 3 1_555 C N1 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 3 A DC 3 1_555 C O6 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 3 A DC 3 1_555 C N2 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 4 A DT 4 1_555 C N1 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 4 A DT 4 1_555 C N6 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 A DA 5 1_555 C N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 A DA 5 1_555 C O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 6 A DG 6 1_555 C N3 DC 4 B DC 4 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 6 A DG 6 1_555 C N3 DC 4 B DC 4 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 6 A DG 6 1_555 C O2 DC 4 B DC 4 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 DG 6 A DG 6 1_555 C O2 DC 4 B DC 4 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 DG 6 A DG 6 1_555 C N4 DC 4 B DC 4 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 DG 6 A DG 6 1_555 C N4 DC 4 B DC 4 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 DT 7 A DT 7 1_555 C N1 DA 3 B DA 3 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DT 7 A DT 7 1_555 C N1 DA 3 B DA 3 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O4 DT 7 A DT 7 1_555 C N6 DA 3 B DA 3 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O4 DT 7 A DT 7 1_555 C N6 DA 3 B DA 3 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N3 DC 8 A DC 8 1_555 C N1 DG 2 B DG 2 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N3 DC 8 A DC 8 1_555 C N1 DG 2 B DG 2 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N4 DC 8 A DC 8 1_555 C O6 DG 2 B DG 2 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N4 DC 8 A DC 8 1_555 C O6 DG 2 B DG 2 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O2 DC 8 A DC 8 1_555 C N2 DG 2 B DG 2 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B O2 DC 8 A DC 8 1_555 C N2 DG 2 B DG 2 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MXT _atom_sites.fract_transf_matrix[1][1] 0.013726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN Z 1 401 2 MN MN . E 4 MN Z 1 402 3 MN MN . F 5 NA Z 1 403 1 NA NA . G 4 MN B 1 101 1 MN MN . H 6 HOH Z 1 501 11 HOH HOH . H 6 HOH Z 2 502 67 HOH HOH . H 6 HOH Z 3 503 93 HOH HOH . H 6 HOH Z 4 504 75 HOH HOH . H 6 HOH Z 5 505 65 HOH HOH . H 6 HOH Z 6 506 98 HOH HOH . H 6 HOH Z 7 507 71 HOH HOH . H 6 HOH Z 8 508 9 HOH HOH . H 6 HOH Z 9 509 26 HOH HOH . H 6 HOH Z 10 510 17 HOH HOH . H 6 HOH Z 11 511 45 HOH HOH . H 6 HOH Z 12 512 58 HOH HOH . H 6 HOH Z 13 513 43 HOH HOH . H 6 HOH Z 14 514 82 HOH HOH . H 6 HOH Z 15 515 62 HOH HOH . H 6 HOH Z 16 516 59 HOH HOH . H 6 HOH Z 17 517 76 HOH HOH . H 6 HOH Z 18 518 69 HOH HOH . H 6 HOH Z 19 519 68 HOH HOH . H 6 HOH Z 20 520 2 HOH HOH . H 6 HOH Z 21 521 31 HOH HOH . H 6 HOH Z 22 522 95 HOH HOH . H 6 HOH Z 23 523 14 HOH HOH . H 6 HOH Z 24 524 1 HOH HOH . H 6 HOH Z 25 525 38 HOH HOH . H 6 HOH Z 26 526 94 HOH HOH . H 6 HOH Z 27 527 30 HOH HOH . H 6 HOH Z 28 528 70 HOH HOH . H 6 HOH Z 29 529 16 HOH HOH . H 6 HOH Z 30 530 7 HOH HOH . H 6 HOH Z 31 531 32 HOH HOH . H 6 HOH Z 32 532 96 HOH HOH . H 6 HOH Z 33 533 39 HOH HOH . H 6 HOH Z 34 534 78 HOH HOH . H 6 HOH Z 35 535 90 HOH HOH . H 6 HOH Z 36 536 92 HOH HOH . H 6 HOH Z 37 537 55 HOH HOH . H 6 HOH Z 38 538 66 HOH HOH . H 6 HOH Z 39 539 19 HOH HOH . H 6 HOH Z 40 540 28 HOH HOH . H 6 HOH Z 41 541 91 HOH HOH . H 6 HOH Z 42 542 80 HOH HOH . H 6 HOH Z 43 543 64 HOH HOH . H 6 HOH Z 44 544 6 HOH HOH . H 6 HOH Z 45 545 74 HOH HOH . H 6 HOH Z 46 546 60 HOH HOH . H 6 HOH Z 47 547 87 HOH HOH . H 6 HOH Z 48 548 37 HOH HOH . H 6 HOH Z 49 549 13 HOH HOH . H 6 HOH Z 50 550 86 HOH HOH . H 6 HOH Z 51 551 21 HOH HOH . H 6 HOH Z 52 552 89 HOH HOH . H 6 HOH Z 53 553 72 HOH HOH . H 6 HOH Z 54 554 73 HOH HOH . H 6 HOH Z 55 555 54 HOH HOH . H 6 HOH Z 56 556 41 HOH HOH . H 6 HOH Z 57 557 5 HOH HOH . H 6 HOH Z 58 558 20 HOH HOH . H 6 HOH Z 59 559 79 HOH HOH . H 6 HOH Z 60 560 61 HOH HOH . H 6 HOH Z 61 561 10 HOH HOH . H 6 HOH Z 62 562 44 HOH HOH . H 6 HOH Z 63 563 63 HOH HOH . H 6 HOH Z 64 564 88 HOH HOH . H 6 HOH Z 65 565 33 HOH HOH . H 6 HOH Z 66 566 22 HOH HOH . H 6 HOH Z 67 567 84 HOH HOH . H 6 HOH Z 68 568 57 HOH HOH . H 6 HOH Z 69 569 15 HOH HOH . H 6 HOH Z 70 570 85 HOH HOH . I 6 HOH A 1 101 49 HOH HOH . I 6 HOH A 2 102 51 HOH HOH . I 6 HOH A 3 103 27 HOH HOH . I 6 HOH A 4 104 8 HOH HOH . I 6 HOH A 5 105 36 HOH HOH . I 6 HOH A 6 106 99 HOH HOH . I 6 HOH A 7 107 48 HOH HOH . I 6 HOH A 8 108 29 HOH HOH . I 6 HOH A 9 109 12 HOH HOH . I 6 HOH A 10 110 47 HOH HOH . I 6 HOH A 11 111 81 HOH HOH . I 6 HOH A 12 112 52 HOH HOH . J 6 HOH B 1 201 100 HOH HOH . J 6 HOH B 2 202 3 HOH HOH . J 6 HOH B 3 203 4 HOH HOH . J 6 HOH B 4 204 42 HOH HOH . J 6 HOH B 5 205 53 HOH HOH . J 6 HOH B 6 206 40 HOH HOH . J 6 HOH B 7 207 50 HOH HOH . J 6 HOH B 8 208 34 HOH HOH . J 6 HOH B 9 209 23 HOH HOH . J 6 HOH B 10 210 24 HOH HOH . J 6 HOH B 11 211 25 HOH HOH . J 6 HOH B 12 212 35 HOH HOH . J 6 HOH B 13 213 56 HOH HOH . J 6 HOH B 14 214 83 HOH HOH . J 6 HOH B 15 215 77 HOH HOH . J 6 HOH B 16 216 97 HOH HOH . J 6 HOH B 17 217 46 HOH HOH . J 6 HOH B 18 218 18 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 10.075 _atom_site.Cartn_y -36.43 _atom_site.Cartn_z -5.052 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id Z _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #