data_7MXU # _model_server_result.job_id ocZ0v0vy1aoFcAxuBld1wg _model_server_result.datetime_utc '2025-03-05 02:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 7MXU # _exptl.entry_id 7MXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MXU _cell.length_a 73.169 _cell.length_b 73.169 _cell.length_c 182.621 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 152 Z ASP 152 1_555 D MN MN . Z MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 A OD2 ASP 152 Z ASP 152 1_555 E MN MN . Z MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc3 A OD2 ASP 171 Z ASP 171 1_555 E MN MN . Z MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 A OD1 ASP 173 Z ASP 173 1_555 E MN MN . Z MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc5 A OD1 ASP 173 Z ASP 173 1_555 F MN MN . Z MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc6 A O SER 222 Z SER 222 1_555 G NA NA . Z NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc7 A OD1 ASP 225 Z ASP 225 1_555 F MN MN . Z MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 A OG SER 229 Z SER 229 1_555 G NA NA . Z NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc9 A O ILE 233 Z ILE 233 1_555 G NA NA . Z NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc10 D MN MN . Z MN 401 1_555 H O HOH . Z HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc11 D MN MN . Z MN 401 1_555 H O HOH . Z HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc12 D MN MN . Z MN 401 1_555 H O HOH . Z HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc13 D MN MN . Z MN 401 1_555 C OP1 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc14 D MN MN . Z MN 401 1_555 J O HOH . B HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 E MN MN . Z MN 402 1_555 C OP1 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc16 E MN MN . Z MN 402 1_555 C OP2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc17 F MN MN . Z MN 403 1_555 C OP2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc18 G NA NA . Z NA 404 1_555 H O HOH . Z HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc19 G NA NA . Z NA 404 1_555 B OP2 DT 4 A DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 A DC 1 1_555 C N1 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 A DC 1 1_555 C O6 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 A DC 1 1_555 C N2 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 A DG 2 1_555 C N3 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 A DG 2 1_555 C O2 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 A DG 2 1_555 C N4 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 3 A DC 3 1_555 C N1 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 3 A DC 3 1_555 C O6 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 3 A DC 3 1_555 C N2 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 4 A DT 4 1_555 C N1 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 4 A DT 4 1_555 C N6 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 A DA 5 1_555 C N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 A DA 5 1_555 C O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 6 A DG 6 1_555 C N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N2 DG 6 A DG 6 1_555 C O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O6 DG 6 A DG 6 1_555 C N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DT 7 A DT 7 1_555 C N1 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 DT 7 A DT 7 1_555 C N6 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DC 8 A DC 8 1_555 C N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N4 DC 8 A DC 8 1_555 C O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O2 DC 8 A DC 8 1_555 C N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MXU _atom_sites.fract_transf_matrix[1][1] 0.013667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN Z 1 401 1 MN MN . E 4 MN Z 1 402 2 MN MN . F 4 MN Z 1 403 1 MN MN . G 5 NA Z 1 404 1 NA NA . H 6 HOH Z 1 501 9 HOH HOH . H 6 HOH Z 2 502 18 HOH HOH . H 6 HOH Z 3 503 41 HOH HOH . H 6 HOH Z 4 504 7 HOH HOH . H 6 HOH Z 5 505 19 HOH HOH . H 6 HOH Z 6 506 32 HOH HOH . H 6 HOH Z 7 507 26 HOH HOH . H 6 HOH Z 8 508 16 HOH HOH . H 6 HOH Z 9 509 5 HOH HOH . H 6 HOH Z 10 510 23 HOH HOH . H 6 HOH Z 11 511 1 HOH HOH . H 6 HOH Z 12 512 20 HOH HOH . H 6 HOH Z 13 513 24 HOH HOH . H 6 HOH Z 14 514 12 HOH HOH . H 6 HOH Z 15 515 6 HOH HOH . H 6 HOH Z 16 516 33 HOH HOH . H 6 HOH Z 17 517 36 HOH HOH . H 6 HOH Z 18 518 14 HOH HOH . H 6 HOH Z 19 519 11 HOH HOH . H 6 HOH Z 20 520 8 HOH HOH . H 6 HOH Z 21 521 31 HOH HOH . H 6 HOH Z 22 522 10 HOH HOH . H 6 HOH Z 23 523 43 HOH HOH . H 6 HOH Z 24 524 3 HOH HOH . H 6 HOH Z 25 525 44 HOH HOH . H 6 HOH Z 26 526 46 HOH HOH . H 6 HOH Z 27 527 2 HOH HOH . H 6 HOH Z 28 528 52 HOH HOH . H 6 HOH Z 29 529 51 HOH HOH . H 6 HOH Z 30 530 4 HOH HOH . H 6 HOH Z 31 531 15 HOH HOH . H 6 HOH Z 32 532 42 HOH HOH . H 6 HOH Z 33 533 21 HOH HOH . H 6 HOH Z 34 534 38 HOH HOH . H 6 HOH Z 35 535 28 HOH HOH . H 6 HOH Z 36 536 35 HOH HOH . H 6 HOH Z 37 537 17 HOH HOH . H 6 HOH Z 38 538 37 HOH HOH . H 6 HOH Z 39 539 49 HOH HOH . I 6 HOH A 1 101 13 HOH HOH . I 6 HOH A 2 102 45 HOH HOH . I 6 HOH A 3 103 27 HOH HOH . I 6 HOH A 4 104 50 HOH HOH . I 6 HOH A 5 105 22 HOH HOH . I 6 HOH A 6 106 48 HOH HOH . I 6 HOH A 7 107 34 HOH HOH . J 6 HOH B 1 101 47 HOH HOH . J 6 HOH B 2 102 30 HOH HOH . J 6 HOH B 3 103 29 HOH HOH . J 6 HOH B 4 104 39 HOH HOH . J 6 HOH B 5 105 25 HOH HOH . J 6 HOH B 6 106 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -13.023 _atom_site.Cartn_y 37.662 _atom_site.Cartn_z -6.312 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 94.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id Z _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #