data_7MY5 # _model_server_result.job_id 3a9hneWRFDYYcjcacfDIWg _model_server_result.datetime_utc '2025-07-15 13:03:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7my5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7MY5 # _exptl.entry_id 7MY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MY5 _cell.length_a 89.591 _cell.length_b 89.591 _cell.length_c 133.076 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -89.591 -89.591 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -89.591 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -89.591 0 5 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -89.591 0 0 6 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -89.591 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -89.591 -89.591 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 Y5V . A Y5V 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 Y5V . A Y5V 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O13 Y5V . A Y5V 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O10 Y5V . A Y5V 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc11 C MN MN . A MN 202 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc12 C MN MN . A MN 202 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 277 n n C21 N02 QQ4 sing 278 n n C20 C19 QQ4 sing 279 n n C19 C42 QQ4 sing 280 n n N02 C12 QQ4 sing 281 n n N02 C42 QQ4 sing 282 n n C12 C11 QQ4 sing 283 n n C42 O05 QQ4 doub 284 n n C38 C41 QQ4 sing 285 n n C38 N07 QQ4 sing 286 n n C41 C40 QQ4 sing 287 n n C10 C09 QQ4 sing 288 n n C11 C01 QQ4 sing 289 n n C40 C39 QQ4 sing 290 n n N07 C09 QQ4 sing 291 n n N07 C39 QQ4 sing 292 n n C01 C02 QQ4 sing 293 n n C01 N03 QQ4 sing 294 n n C08 C09 QQ4 sing 295 n n C08 C07 QQ4 sing 296 n n C02 C03 QQ4 sing 297 n n C39 O07 QQ4 doub 298 n n C26 C27 QQ4 sing 299 n n C26 N04 QQ4 sing 300 n n C22 N03 QQ4 sing 301 n n C22 C25 QQ4 sing 302 n n N03 C23 QQ4 sing 303 n n C06 C07 QQ4 sing 304 n n C06 C05 QQ4 sing 305 n n C07 N06 QQ4 sing 306 n n C27 C28 QQ4 sing 307 n n C03 N04 QQ4 sing 308 n n C03 C04 QQ4 sing 309 n n C25 C24 QQ4 sing 310 n n N04 C29 QQ4 sing 311 n n C04 C05 QQ4 sing 312 n n O04 C30 QQ4 doub 313 n n C23 O02 QQ4 doub 314 n n C23 C24 QQ4 sing 315 n n C05 N05 QQ4 sing 316 n n N06 C34 QQ4 sing 317 n n N06 C37 QQ4 sing 318 n n C34 C35 QQ4 sing 319 n n C28 C29 QQ4 sing 320 n n C29 O03 QQ4 doub 321 n n C30 N05 QQ4 sing 322 n n C30 C31 QQ4 sing 323 n n N05 C33 QQ4 sing 324 n n C37 O06 QQ4 doub 325 n n C37 C36 QQ4 sing 326 n n C35 C36 QQ4 sing 327 n n C31 C32 QQ4 sing 328 n n C33 C32 QQ4 sing 329 n n C12 H1 QQ4 sing 330 n n C12 H2 QQ4 sing 331 n n C11 H3 QQ4 sing 332 n n C11 H4 QQ4 sing 333 n n C10 H5 QQ4 sing 334 n n C10 H6 QQ4 sing 335 n n C10 H7 QQ4 sing 336 n n C01 H8 QQ4 sing 337 n n C02 H9 QQ4 sing 338 n n C02 H10 QQ4 sing 339 n n C03 H11 QQ4 sing 340 n n C04 H12 QQ4 sing 341 n n C04 H13 QQ4 sing 342 n n C05 H14 QQ4 sing 343 n n C06 H15 QQ4 sing 344 n n C06 H16 QQ4 sing 345 n n C07 H17 QQ4 sing 346 n n C08 H18 QQ4 sing 347 n n C08 H19 QQ4 sing 348 n n C09 H20 QQ4 sing 349 n n C19 H21 QQ4 sing 350 n n C19 H22 QQ4 sing 351 n n C20 H23 QQ4 sing 352 n n C20 H24 QQ4 sing 353 n n C21 H25 QQ4 sing 354 n n C21 H26 QQ4 sing 355 n n C22 H27 QQ4 sing 356 n n C22 H28 QQ4 sing 357 n n C24 H29 QQ4 sing 358 n n C24 H30 QQ4 sing 359 n n C25 H31 QQ4 sing 360 n n C25 H32 QQ4 sing 361 n n C26 H33 QQ4 sing 362 n n C26 H34 QQ4 sing 363 n n C27 H35 QQ4 sing 364 n n C27 H36 QQ4 sing 365 n n C28 H37 QQ4 sing 366 n n C28 H38 QQ4 sing 367 n n C31 H39 QQ4 sing 368 n n C31 H40 QQ4 sing 369 n n C32 H41 QQ4 sing 370 n n C32 H42 QQ4 sing 371 n n C33 H43 QQ4 sing 372 n n C33 H44 QQ4 sing 373 n n C34 H45 QQ4 sing 374 n n C34 H46 QQ4 sing 375 n n C35 H47 QQ4 sing 376 n n C35 H48 QQ4 sing 377 n n C36 H49 QQ4 sing 378 n n C36 H50 QQ4 sing 379 n n C38 H51 QQ4 sing 380 n n C38 H52 QQ4 sing 381 n n C40 H53 QQ4 sing 382 n n C40 H54 QQ4 sing 383 n n C41 H55 QQ4 sing 384 n n C41 H56 QQ4 sing 385 n n # _atom_sites.entry_id 7MY5 _atom_sites.fract_transf_matrix[1][1] 0.011162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 Y5V A 1 203 301 Y5V 503 . E 4 QQ4 A 1 204 401 QQ4 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 5 SO4 A 1 207 3 SO4 SO4 . I 6 HOH A 1 301 2 HOH HOH . I 6 HOH A 2 302 5 HOH HOH . I 6 HOH A 3 303 3 HOH HOH . I 6 HOH A 4 304 1 HOH HOH . I 6 HOH A 5 305 8 HOH HOH . I 6 HOH A 6 306 10 HOH HOH . I 6 HOH A 7 307 6 HOH HOH . I 6 HOH A 8 308 9 HOH HOH . I 6 HOH A 9 309 7 HOH HOH . I 6 HOH A 10 310 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 QQ4 . . . E 4 -36.324 -42.683 -12.491 1 101.42 ? C11 QQ4 204 A 1 HETATM 2 C C10 QQ4 . . . E 4 -31.567 -48.475 -11.602 1 91.75 ? C10 QQ4 204 A 1 HETATM 3 C C01 QQ4 . . . E 4 -35.191 -41.746 -12.892 1 110.31 ? C01 QQ4 204 A 1 HETATM 4 C C02 QQ4 . . . E 4 -33.9 -42.188 -12.201 1 101.85 ? C02 QQ4 204 A 1 HETATM 5 C C03 QQ4 . . . E 4 -32.735 -42.234 -13.191 1 103.49 ? C03 QQ4 204 A 1 HETATM 6 C C04 QQ4 . . . E 4 -31.533 -42.901 -12.51 1 95.36 ? C04 QQ4 204 A 1 HETATM 7 C C05 QQ4 . . . E 4 -31.057 -44.156 -13.253 1 90.81 ? C05 QQ4 204 A 1 HETATM 8 C C06 QQ4 . . . E 4 -29.859 -44.761 -12.496 1 90.09 ? C06 QQ4 204 A 1 HETATM 9 C C07 QQ4 . . . E 4 -29.929 -46.255 -12.164 1 92.82 ? C07 QQ4 204 A 1 HETATM 10 C C08 QQ4 . . . E 4 -30.359 -46.444 -10.707 1 99.82 ? C08 QQ4 204 A 1 HETATM 11 C C09 QQ4 . . . E 4 -30.83 -47.876 -10.403 1 94.08 ? C09 QQ4 204 A 1 HETATM 12 C C22 QQ4 . . . E 4 -36.042 -39.381 -13.487 1 114.06 ? C22 QQ4 204 A 1 HETATM 13 C C23 QQ4 . . . E 4 -35.494 -39.754 -11.209 1 109.08 ? C23 QQ4 204 A 1 HETATM 14 C C24 QQ4 . . . E 4 -35.976 -38.308 -11.344 1 99.79 ? C24 QQ4 204 A 1 HETATM 15 C C25 QQ4 . . . E 4 -36.751 -38.326 -12.648 1 108.72 ? C25 QQ4 204 A 1 HETATM 16 C C26 QQ4 . . . E 4 -32.455 -40.386 -14.964 1 84.8 ? C26 QQ4 204 A 1 HETATM 17 C C27 QQ4 . . . E 4 -32.488 -38.859 -14.855 1 81.13 ? C27 QQ4 204 A 1 HETATM 18 C C28 QQ4 . . . E 4 -31.745 -38.563 -13.556 1 88.02 ? C28 QQ4 204 A 1 HETATM 19 C C29 QQ4 . . . E 4 -31.978 -39.808 -12.718 1 100.99 ? C29 QQ4 204 A 1 HETATM 20 C C30 QQ4 . . . E 4 -33.179 -45.55 -12.528 1 116.83 ? C30 QQ4 204 A 1 HETATM 21 C C31 QQ4 . . . E 4 -34.101 -46.509 -13.257 1 108.11 ? C31 QQ4 204 A 1 HETATM 22 C C32 QQ4 . . . E 4 -33.302 -46.943 -14.456 1 104.2 ? C32 QQ4 204 A 1 HETATM 23 C C33 QQ4 . . . E 4 -32.432 -45.734 -14.78 1 95.27 ? C33 QQ4 204 A 1 HETATM 24 C C34 QQ4 . . . E 4 -27.401 -46.385 -11.519 1 75.58 ? C34 QQ4 204 A 1 HETATM 25 C C35 QQ4 . . . E 4 -26.201 -46.917 -12.311 1 66.15 ? C35 QQ4 204 A 1 HETATM 26 C C36 QQ4 . . . E 4 -26.713 -48.109 -13.048 1 66.68 ? C36 QQ4 204 A 1 HETATM 27 C C37 QQ4 . . . E 4 -28.179 -47.85 -13.242 1 81.34 ? C37 QQ4 204 A 1 HETATM 28 C C38 QQ4 . . . E 4 -29.289 -49.924 -10.788 1 90.65 ? C38 QQ4 204 A 1 HETATM 29 C C39 QQ4 . . . E 4 -28.843 -48.577 -8.887 1 111.38 ? C39 QQ4 204 A 1 HETATM 30 C C40 QQ4 . . . E 4 -27.822 -49.707 -8.901 1 110.33 ? C40 QQ4 204 A 1 HETATM 31 C C41 QQ4 . . . E 4 -28.442 -50.741 -9.817 1 97.37 ? C41 QQ4 204 A 1 HETATM 32 N N03 QQ4 . . . E 4 -35.551 -40.376 -12.538 1 119.27 ? N03 QQ4 204 A 1 HETATM 33 N N04 QQ4 . . . E 4 -32.405 -40.88 -13.595 1 102.31 ? N04 QQ4 204 A 1 HETATM 34 N N05 QQ4 . . . E 4 -32.155 -45.094 -13.483 1 107.58 ? N05 QQ4 204 A 1 HETATM 35 N N06 QQ4 . . . E 4 -28.596 -46.803 -12.306 1 82.25 ? N06 QQ4 204 A 1 HETATM 36 N N07 QQ4 . . . E 4 -29.717 -48.738 -10.045 1 100.93 ? N07 QQ4 204 A 1 HETATM 37 O O02 QQ4 . . . E 4 -35.147 -40.263 -10.196 1 118.85 ? O02 QQ4 204 A 1 HETATM 38 O O03 QQ4 . . . E 4 -31.836 -39.877 -11.544 1 108.06 ? O03 QQ4 204 A 1 HETATM 39 O O04 QQ4 . . . E 4 -33.272 -45.241 -11.386 1 105.24 ? O04 QQ4 204 A 1 HETATM 40 O O06 QQ4 . . . E 4 -28.884 -48.406 -14.017 1 88.44 ? O06 QQ4 204 A 1 HETATM 41 O O07 QQ4 . . . E 4 -28.912 -47.721 -8.074 1 107.18 ? O07 QQ4 204 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 41 #