data_7MYG # _model_server_result.job_id 3exMyi8Td5-6uRRaVP2McQ _model_server_result.datetime_utc '2024-11-29 07:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7myg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":303}' # _entry.id 7MYG # _exptl.entry_id 7MYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.97 _cell.angle_gamma 90 _cell.entry_id 7MYG _cell.length_a 59.458 _cell.length_b 70.606 _cell.length_c 68.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,Q 1 1 B,J,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7MYG _atom_sites.fract_transf_matrix[1][1] 0.016819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 1 GOL GOL . D 2 GOL A 1 302 3 GOL GOL . E 2 GOL A 1 303 5 GOL GOL . F 2 GOL A 1 304 6 GOL GOL . G 2 GOL A 1 305 9 GOL GOL . H 2 GOL A 1 306 12 GOL GOL . I 2 GOL A 1 307 13 GOL GOL . J 2 GOL B 1 301 2 GOL GOL . K 2 GOL B 1 302 4 GOL GOL . L 2 GOL B 1 303 7 GOL GOL . M 2 GOL B 1 304 8 GOL GOL . N 2 GOL B 1 305 10 GOL GOL . O 2 GOL B 1 306 11 GOL GOL . P 2 GOL B 1 307 14 GOL GOL . Q 3 HOH A 1 401 166 HOH HOH . Q 3 HOH A 2 402 74 HOH HOH . Q 3 HOH A 3 403 47 HOH HOH . Q 3 HOH A 4 404 17 HOH HOH . Q 3 HOH A 5 405 7 HOH HOH . Q 3 HOH A 6 406 145 HOH HOH . Q 3 HOH A 7 407 1 HOH HOH . Q 3 HOH A 8 408 118 HOH HOH . Q 3 HOH A 9 409 25 HOH HOH . Q 3 HOH A 10 410 15 HOH HOH . Q 3 HOH A 11 411 13 HOH HOH . Q 3 HOH A 12 412 154 HOH HOH . Q 3 HOH A 13 413 97 HOH HOH . Q 3 HOH A 14 414 36 HOH HOH . Q 3 HOH A 15 415 3 HOH HOH . Q 3 HOH A 16 416 38 HOH HOH . Q 3 HOH A 17 417 95 HOH HOH . Q 3 HOH A 18 418 156 HOH HOH . Q 3 HOH A 19 419 199 HOH HOH . Q 3 HOH A 20 420 92 HOH HOH . Q 3 HOH A 21 421 27 HOH HOH . Q 3 HOH A 22 422 65 HOH HOH . Q 3 HOH A 23 423 57 HOH HOH . Q 3 HOH A 24 424 19 HOH HOH . Q 3 HOH A 25 425 9 HOH HOH . Q 3 HOH A 26 426 18 HOH HOH . Q 3 HOH A 27 427 58 HOH HOH . Q 3 HOH A 28 428 153 HOH HOH . Q 3 HOH A 29 429 49 HOH HOH . Q 3 HOH A 30 430 35 HOH HOH . Q 3 HOH A 31 431 85 HOH HOH . Q 3 HOH A 32 432 20 HOH HOH . Q 3 HOH A 33 433 143 HOH HOH . Q 3 HOH A 34 434 14 HOH HOH . Q 3 HOH A 35 435 46 HOH HOH . Q 3 HOH A 36 436 22 HOH HOH . Q 3 HOH A 37 437 198 HOH HOH . Q 3 HOH A 38 438 44 HOH HOH . Q 3 HOH A 39 439 11 HOH HOH . Q 3 HOH A 40 440 138 HOH HOH . Q 3 HOH A 41 441 10 HOH HOH . Q 3 HOH A 42 442 114 HOH HOH . Q 3 HOH A 43 443 52 HOH HOH . Q 3 HOH A 44 444 155 HOH HOH . Q 3 HOH A 45 445 51 HOH HOH . Q 3 HOH A 46 446 105 HOH HOH . Q 3 HOH A 47 447 99 HOH HOH . Q 3 HOH A 48 448 56 HOH HOH . Q 3 HOH A 49 449 151 HOH HOH . Q 3 HOH A 50 450 142 HOH HOH . Q 3 HOH A 51 451 148 HOH HOH . Q 3 HOH A 52 452 141 HOH HOH . Q 3 HOH A 53 453 164 HOH HOH . Q 3 HOH A 54 454 124 HOH HOH . Q 3 HOH A 55 455 181 HOH HOH . Q 3 HOH A 56 456 163 HOH HOH . Q 3 HOH A 57 457 158 HOH HOH . Q 3 HOH A 58 458 152 HOH HOH . Q 3 HOH A 59 459 161 HOH HOH . Q 3 HOH A 60 460 84 HOH HOH . Q 3 HOH A 61 461 146 HOH HOH . Q 3 HOH A 62 462 147 HOH HOH . Q 3 HOH A 63 463 122 HOH HOH . Q 3 HOH A 64 464 162 HOH HOH . Q 3 HOH A 65 465 112 HOH HOH . R 3 HOH B 1 401 54 HOH HOH . R 3 HOH B 2 402 131 HOH HOH . R 3 HOH B 3 403 45 HOH HOH . R 3 HOH B 4 404 59 HOH HOH . R 3 HOH B 5 405 93 HOH HOH . R 3 HOH B 6 406 31 HOH HOH . R 3 HOH B 7 407 34 HOH HOH . R 3 HOH B 8 408 40 HOH HOH . R 3 HOH B 9 409 8 HOH HOH . R 3 HOH B 10 410 6 HOH HOH . R 3 HOH B 11 411 2 HOH HOH . R 3 HOH B 12 412 24 HOH HOH . R 3 HOH B 13 413 21 HOH HOH . R 3 HOH B 14 414 4 HOH HOH . R 3 HOH B 15 415 203 HOH HOH . R 3 HOH B 16 416 32 HOH HOH . R 3 HOH B 17 417 29 HOH HOH . R 3 HOH B 18 418 30 HOH HOH . R 3 HOH B 19 419 140 HOH HOH . R 3 HOH B 20 420 73 HOH HOH . R 3 HOH B 21 421 12 HOH HOH . R 3 HOH B 22 422 5 HOH HOH . R 3 HOH B 23 423 132 HOH HOH . R 3 HOH B 24 424 87 HOH HOH . R 3 HOH B 25 425 78 HOH HOH . R 3 HOH B 26 426 82 HOH HOH . R 3 HOH B 27 427 16 HOH HOH . R 3 HOH B 28 428 23 HOH HOH . R 3 HOH B 29 429 42 HOH HOH . R 3 HOH B 30 430 26 HOH HOH . R 3 HOH B 31 431 28 HOH HOH . R 3 HOH B 32 432 110 HOH HOH . R 3 HOH B 33 433 67 HOH HOH . R 3 HOH B 34 434 88 HOH HOH . R 3 HOH B 35 435 71 HOH HOH . R 3 HOH B 36 436 98 HOH HOH . R 3 HOH B 37 437 103 HOH HOH . R 3 HOH B 38 438 43 HOH HOH . R 3 HOH B 39 439 80 HOH HOH . R 3 HOH B 40 440 50 HOH HOH . R 3 HOH B 41 441 149 HOH HOH . R 3 HOH B 42 442 121 HOH HOH . R 3 HOH B 43 443 39 HOH HOH . R 3 HOH B 44 444 68 HOH HOH . R 3 HOH B 45 445 100 HOH HOH . R 3 HOH B 46 446 185 HOH HOH . R 3 HOH B 47 447 83 HOH HOH . R 3 HOH B 48 448 33 HOH HOH . R 3 HOH B 49 449 183 HOH HOH . R 3 HOH B 50 450 195 HOH HOH . R 3 HOH B 51 451 200 HOH HOH . R 3 HOH B 52 452 126 HOH HOH . R 3 HOH B 53 453 202 HOH HOH . R 3 HOH B 54 454 196 HOH HOH . R 3 HOH B 55 455 186 HOH HOH . R 3 HOH B 56 456 201 HOH HOH . R 3 HOH B 57 457 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 2 21.222 12.036 98.104 1 33.09 ? C1 GOL 303 B 1 HETATM 2 O O1 GOL . . . L 2 21.775 11.128 97.196 1 31.34 ? O1 GOL 303 B 1 HETATM 3 C C2 GOL . . . L 2 19.976 12.585 97.431 1 37.17 ? C2 GOL 303 B 1 HETATM 4 O O2 GOL . . . L 2 20.413 13.255 96.278 1 50.05 ? O2 GOL 303 B 1 HETATM 5 C C3 GOL . . . L 2 19.241 13.6 98.3 1 35.33 ? C3 GOL 303 B 1 HETATM 6 O O3 GOL . . . L 2 18.249 14.205 97.516 1 36.37 ? O3 GOL 303 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #