data_7MYJ
#
_model_server_result.job_id            kypY93Dk-kjRs34Wsjp3Ig 
_model_server_result.datetime_utc      '2024-11-23 10:31:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7myj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    7MYJ 
#
_exptl.entry_id    7MYJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.55 
_cell.angle_gamma         90 
_cell.entry_id            7MYJ 
_cell.length_a            75.844 
_cell.length_b            134.199 
_cell.length_c            141.821 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MYJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,K,L 1 1 
C,D,F,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 184 A ARG 171 1_555 A N TPO 185 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C TPO 185 A TPO 172 1_555 A N SER 186 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 B C ARG 107 B ARG 107 1_555 B N SEP 108 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale4 B C SEP 108 B SEP 108 1_555 B N HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale5 C C ARG 184 C ARG 171 1_555 C N TPO 185 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale6 C C TPO 185 C TPO 172 1_555 C N SER 186 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 D C ARG 107 D ARG 107 1_555 D N SEP 108 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 D C SEP 108 D SEP 108 1_555 D N HIS 109 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 85 n n 
P O2P AMP sing 86 n n 
P O3P AMP sing 87 n n 
P O5' AMP sing 88 n n 
O2P HOP2 AMP sing 89 n n 
O3P HOP3 AMP sing 90 n n 
O5' C5' AMP sing 91 n n 
C5' C4' AMP sing 92 n n 
C5' "H5'1" AMP sing 93 n n 
C5' "H5'2" AMP sing 94 n n 
C4' O4' AMP sing 95 n n 
C4' C3' AMP sing 96 n n 
C4' H4' AMP sing 97 n n 
O4' C1' AMP sing 98 n n 
C3' O3' AMP sing 99 n n 
C3' C2' AMP sing 100 n n 
C3' H3' AMP sing 101 n n 
O3' HO3' AMP sing 102 n n 
C2' O2' AMP sing 103 n n 
C2' C1' AMP sing 104 n n 
C2' H2' AMP sing 105 n n 
O2' HO2' AMP sing 106 n n 
C1' N9 AMP sing 107 n n 
C1' H1' AMP sing 108 n n 
N9 C8 AMP sing 109 n y 
N9 C4 AMP sing 110 n y 
C8 N7 AMP doub 111 n y 
C8 H8 AMP sing 112 n n 
N7 C5 AMP sing 113 n y 
C5 C6 AMP sing 114 n y 
C5 C4 AMP doub 115 n y 
C6 N6 AMP sing 116 n n 
C6 N1 AMP doub 117 n y 
N6 HN61 AMP sing 118 n n 
N6 HN62 AMP sing 119 n n 
N1 C2 AMP sing 120 n y 
C2 N3 AMP doub 121 n y 
C2 H2 AMP sing 122 n n 
N3 C4 AMP sing 123 n y 
#
_atom_sites.entry_id                     7MYJ 
_atom_sites.fract_transf_matrix[1][1]    0.013185 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000587 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007452 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 4O7 A 1 601 601 4O7 STU . 
H 5 ZQV A 1 602 701 ZQV DRG . 
I 4 4O7 C 1 601 601 4O7 STU . 
J 5 ZQV D 1 701 701 ZQV DRG . 
K 6 AMP E 1 401 401 AMP AMP . 
L 6 AMP E 1 402 501 AMP AMP . 
M 6 AMP F 1 401 401 AMP AMP . 
N 6 AMP F 1 402 501 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . L 6 -28.766 14.544 -36.597 1 63.15 ? P AMP 402 E 1 
HETATM 2 O O1P AMP . . . L 6 -28.45 15.544 -37.695 1 64.19 ? O1P AMP 402 E 1 
HETATM 3 O O2P AMP . . . L 6 -28.134 13.185 -36.842 1 62.98 ? O2P AMP 402 E 1 
HETATM 4 O O3P AMP . . . L 6 -30.248 14.448 -36.295 1 63.06 ? O3P AMP 402 E 1 
HETATM 5 O O5' AMP . . . L 6 -28.088 15.128 -35.249 1 62.27 ? O5' AMP 402 E 1 
HETATM 6 C C5' AMP . . . L 6 -26.651 15.005 -35.054 1 61.28 ? C5' AMP 402 E 1 
HETATM 7 C C4' AMP . . . L 6 -26.112 16.253 -34.394 1 61.78 ? C4' AMP 402 E 1 
HETATM 8 O O4' AMP . . . L 6 -26.102 17.34 -35.354 1 62.61 ? O4' AMP 402 E 1 
HETATM 9 C C3' AMP . . . L 6 -26.867 16.77 -33.159 1 61.72 ? C3' AMP 402 E 1 
HETATM 10 O O3' AMP . . . L 6 -25.994 17.015 -32.063 1 62.1 ? O3' AMP 402 E 1 
HETATM 11 C C2' AMP . . . L 6 -27.58 18.03 -33.664 1 62.61 ? C2' AMP 402 E 1 
HETATM 12 O O2' AMP . . . L 6 -27.782 19.012 -32.67 1 63.14 ? O2' AMP 402 E 1 
HETATM 13 C C1' AMP . . . L 6 -26.661 18.501 -34.787 1 63.74 ? C1' AMP 402 E 1 
HETATM 14 N N9 AMP . . . L 6 -27.354 19.231 -35.845 1 65.19 ? N9 AMP 402 E 1 
HETATM 15 C C8 AMP . . . L 6 -28.281 18.716 -36.715 1 64.75 ? C8 AMP 402 E 1 
HETATM 16 N N7 AMP . . . L 6 -28.748 19.594 -37.566 1 65.99 ? N7 AMP 402 E 1 
HETATM 17 C C5 AMP . . . L 6 -28.081 20.766 -37.245 1 67.62 ? C5 AMP 402 E 1 
HETATM 18 C C6 AMP . . . L 6 -28.135 22.065 -37.791 1 69.54 ? C6 AMP 402 E 1 
HETATM 19 N N6 AMP . . . L 6 -28.925 22.406 -38.805 1 70.36 ? N6 AMP 402 E 1 
HETATM 20 N N1 AMP . . . L 6 -27.335 23.011 -37.239 1 70.84 ? N1 AMP 402 E 1 
HETATM 21 C C2 AMP . . . L 6 -26.54 22.662 -36.218 1 70.23 ? C2 AMP 402 E 1 
HETATM 22 N N3 AMP . . . L 6 -26.416 21.48 -35.617 1 68.47 ? N3 AMP 402 E 1 
HETATM 23 C C4 AMP . . . L 6 -27.215 20.557 -36.186 1 67.26 ? C4 AMP 402 E 1 
#
_model_server_stats.io_time_ms              136 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#